Hippoglossus stenolepis (Pacific halibut): 118112351
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Entry
118112351 CDS
T08308
Symbol
abca1b
Name
(RefSeq) phospholipid-transporting ATPase ABCA1b isoform X1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp02010
ABC transporters
hsp04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
118112351 (abca1b)
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
118112351 (abca1b)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
hsp02000
]
118112351 (abca1b)
Transporters [BR:
hsp02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
118112351 (abca1b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
AAA_23
Motif
Other DBs
NCBI-GeneID:
118112351
NCBI-ProteinID:
XP_035017486
LinkDB
All DBs
Position
7:27961837..27985973
Genome browser
AA seq
2292 aa
AA seq
DB search
MSVSTQLGLLLWKNFTYRRRQTPQLLVEIVWPLFIFFILIAVRLNYPPYEQHECHFPNKA
MPSAGTLPWLQGILCNANNPCFRQLTPGESPGVVGNFNDSIISRLFSDAKKILLYSQNDK
NLDGFKELAHALRTLQVSRSGFKLKNFLRDNETLSSFLRSNVSFPEHDIQQIRDADVNLE
TVLLRGFGVHLRDMCLRKGGKRSVEDFVTISDPRVSILVQDVICQAPPAWLDLAEDHFLN
NLDFLKPIQRDVRSDPEAVRQVSRATNNLLDSLGSLAVELAGMKSWIDLRNEIIFLTQNA
TSSPSTMYQAVSRIVCGHPEGGGLQIKSLNWYEDSNYKALFGNHNSSEDEPMSLYDNSST
PYCNSLVKNMDSNPMSRMIWQALKPLLMGKILYTPHTPATQKVIHEVNRTFQELGVFRDL
GGMWEEMRPKVWSFMENSQHMDLIRTLLKNNVTARLFHAQLAQTDWTVSDVSNFLSRQAE
DPRPPGSALTWREVFNETDQAIMSISRFMECVNLDKLEPVATEEGLVHQSMLLLEDRKFW
AGIVFPDVDPNATELPPKLNYKIRMDIDNVERTNKIKDAYWDPGPRADPFEDMRYIWGGF
SYLQDVIEQGIIRAVTGTKEKTGVYIQQMPYPCYVDDIFLRVMSRSMPLFMTLAWMYSVA
IILKSVVYEKEARLKETMRIMGLDNGILWLSWFISSLIPLLISAGLLVLLLKKGNLLPYS
DPGVVFLFLGSFAVVTIMQCFLISTAFARANLAAACGGIIYFTLYLPYVLCVAWQDYIGF
GAKVFASLLSPVAFGFGCEYFALFEEQGVGIQWNNLFSSPLEEDDFSLRTAIIIMYFDSF
LYGVLTWYIEAVFPGQYGIPRPWYFPFTKSYWLGEKDGKSNNVPLSRKGNPGVVCMEEEP
AHLKPGVYIENLVKVYRHGKKLAVDGLTLGFYEGQITSFLGHNGAGKTTTMSILTGLFPP
TSGTAYILGRDIRSELSAIRQSLGVCPQHNVLFSMLTVEEHIWFYSRLKGLSEQQVKCEI
EQILQDTGLPHKRTARTSTLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWD
LLLKYRQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLYLKNQLGTGYYLTLVKK
EPEPSLSSCRNSSSTVSFTKKEEECASVSSSDAGLGSENESEAATIDTGPAASVCDIPFV
PPDVSVVSSLILHHVPAARLVEDLGHELTYVLPYNAAKDGAFVELFKNLDQKLAELSISS
YGISDTTLEEIFLKVAEDNGVDTEVPSDGTLPVPRRRRTHAFGGGDHQSCLRPLTEDDSN
DSDVDPESRETDWLSGSEGKGSYQVRGWSLKRQQFVALLWKRFLNARRSRKGFFAQIVLP
AVFVCIALVFSLIVPPFGKYPSLELQPWMYEDQVTFISDDAPRDANMQGLLNALLDAPGF
GTRCMDGHPIQEAPCTMGDEDWHTPEVPESVQQLFSSRNWSMEDPSPACFCSCDGRKKML
PDCPPGAGGLPPPEMKLSATDTLQNLTGRNISDYLVKTYAQIIGKSLKNKVWVNEFRYGG
FSLGARSTQVLPPANEIDDAIERVRKIFELQKGAAADRFLDSLSGFINGLDTKNNVKIWF
NNKGWHSIGAFINVMNNGILRANLPRGHDPSKFGIRAFNHPLNLTKEQLSQVALVTTSVD
VLVSICVIFAMSFVPASFVVFLIQERVNKAKHMQFISGVQPLLYWVANFTWDMCNYIVPA
TLVIFIFICFQQKAYVSATNLPALALLLLLYGWSITPLMYPASFFFTIPSTAYVVLTSVN
ILIGINGSISTFVMELFGNNEIGGINDILKNVLLIFPHFCLGRGLIDMVKNQAMADALER
FGENRLRSPLEWDMVGKNLFAMAVEGAVFFIITVLIQYRFFIKPSSVSKLTKLAPLGDED
EDVARERQKIVHGHGHGDILELRQLTKVFKRKQKPAVDRLCVGIPPGECFGLLGVNGAGK
TTTFKMLTGDTVVTSGEAFLAGKSILREIDEVHQNIGYCPQFDAINELLTGREHLELYAV
LRGVPEKEVCDVADWGIRKLGLLKYADKAAGSYSGGNMRKLSTAMSLIGAPPVVFLDEPT
TGMDPKARRALWNCIHSVIKEGRSVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLK
NRFGDGYTIILRVAGPDPDLLPVMKFIESELSGSTLKEKHRNMLQYQLPSSLTLLAHIFS
ILAKNKETLRIEDYSVTQTTLDQVFVNFAKDQSDDYHSKDSVRRKDVSIEVPTLSSAPGA
AEGGDALRESVM
NT seq
6879 nt
NT seq
+upstream
nt +downstream
nt
atgtctgtctcgacgcagctgggtctgctgctgtggaagaactttacgtacagacgacga
cagacgcctcagctcctggtggagatcgtctggccgctcttcatcttcttcatcctcatc
gctgtgaggctcaactacccgccgtacgaacaacatgagtgtcattttcccaacaaggcg
atgccgtcagccggcacgctgccctggctccagggaatcctctgcaacgccaacaacccg
tgtttccgacaactgacgccaggcgagtctccgggtgtcgtcggcaacttcaatgactcc
ataatttctcgtcttttctccgatgccaagaagattcttctctacagtcaaaatgacaag
aacctggatgggttcaaggagctcgctcacgctctgcggacgctgcaggtcagccgatca
ggcttcaagttgaaaaattttctacgagacaatgagactctgtcgagtttcctgcggagt
aacgtctccttccctgaacacgacatccaacagatcagagacgcagacgtcaacctagag
acagtcctccttagaggtttcggagtccacctgagggacatgtgtctcaggaaggggggt
aagcggagtgtggaggactttgtgacgatctcggaccctcgggtgtcgatactggttcag
gatgtcatctgtcaggcgccaccagcctggctggacctcgctgaggaccacttcctaaac
aacctggacttcctcaaacccatccagagggatgtgaggtctgacccagaggccgtcaga
caggtttcccgggcgacgaacaacctcctggacagtctgggttctctggcggtggagttg
gccggtatgaagagctggatcgatctgaggaatgagatcatcttcctgacacagaacgcc
acgtcatcccccagcaccatgtaccaggcggtctccaggatcgtgtgtggtcaccctgaa
ggcggcggcctgcagatcaaatccctcaactggtacgaagacagcaactacaaggctctg
tttggaaaccacaacagcagcgaggatgagccaatgtcgctgtacgacaactcctccact
ccgtactgtaacagtctggtgaagaacatggactctaacccgatgtccaggatgatctgg
caggctctgaagccgctgctgatgggaaagatcctgtacaccccccacacccccgccaca
cagaaggtcatccacgaggtgaaccggaccttccaggagcttggtgtgttcagggacctt
ggaggaatgtgggaggagatgagacctaaagtctggagcttcatggagaacagtcaacac
atggacctgatcaggactctgctgaagaacaacgtcaccgcaagattattccacgctcaa
ctggcccaaactgactggaccgtgtccgacgtgtcaaacttcctgtccaggcaggcagaa
gacccccggccaccgggcagcgccctcacctggagggaggtgttcaacgagacagaccag
gccatcatgagcatctcccgcttcatggagtgtgtgaacctagacaaactggagcccgtt
gccacggaggagggactggtccaccagtccatgttgctgctggaggacaggaagttctgg
gcaggaatcgttttcccggatgtcgaccccaatgccacagagctgccgccaaaactcaac
tacaagatccgcatggacatcgacaacgtagagaggaccaataagatcaaagacgcgtac
tgggacccaggtcctcgtgcggacccatttgaggacatgcggtatatctggggaggattt
tcgtacctgcaggacgttattgagcaaggcatcattcgagcagtgacgggcaccaaggaa
aagacgggagtttacatccagcagatgccgtatccctgctacgtcgacgacattttcctg
cgggtgatgagtcgctccatgccactcttcatgacgttggcgtggatgtactcggtggcg
atcattctgaagagtgtggtgtatgagaaagaggcaaggctgaaggagaccatgaggatc
atgggattggataacgggatcctgtggttaagctggttcatcagcagcctgattcctctg
ctgatcagcgccggactgttggtgctactgctcaagaaggggaacctgctgccctacagt
gaccctggcgtggtcttcctcttccttggatcctttgccgtggtgaccatcatgcagtgt
ttcctcatcagcacggcgttcgcacgagctaacctggcggcggcctgcggaggaatcatc
tacttcaccctgtacctaccctacgtcctgtgtgtagcctggcaggactacatcggcttt
ggagccaaagtctttgctagcctcctgtcaccggtggctttcgggtttggctgcgagtac
tttgctctgtttgaggagcagggagtcgggatccagtggaacaacctgttctcgagtcct
ttggaggaggacgacttcagcctgcgcaccgccatcatcatcatgtactttgactccttt
ctatacggagtccttacctggtacatcgaggccgtgtttccaggtcagtacgggattcct
cggccctggtacttccctttcaccaagtcttactggttgggagaaaaggacggaaagtct
aacaatgtccctctgagccggaaaggaaacccaggagtcgtgtgcatggaggaggagcct
gctcacctgaagccaggtgtctacattgagaacctggtgaaggtttatcgtcacggtaag
aaactggcggtggacggactgacgctcggcttctacgagggacaaatcacttccttccta
ggacacaacggagctggaaaaactaccaccatgtccatcctgactggtctgttccctccc
acctctggtacggcctacatcctgggcagagacatcaggtcggagctgagcgccatcaga
caaagtcttggagtttgtccacaacacaacgtcctcttcagcatgctgacggtggaggag
cacatctggttctattccaggctcaaaggcctgtcagagcagcaggtgaaatgtgagatc
gagcagatcctgcaggacactgggctgcctcacaaacgcactgctagaaccagcacgctg
tccggaggcatgcagaggaaactgtctgtggctctggcctttgttggagggtcgaaggtc
gtgatcctggacgaacctacggccggcgtcgacccctatgcccgcagagggatttgggat
ctcctgctgaagtacagacaaggacgcaccatcatcctgtccacgcaccacatggacgag
gccgacatcctgggtgacagaatcgccatcatctcccacgggaagttgtgctgtgtggga
tcgtctctgtacctgaagaaccagctggggacaggctattacctgacgctagtcaagaaa
gaaccagaaccatcgctgagctcctgcaggaactcgtccagcacagtgtccttcaccaag
aaggaggaggagtgtgcgtccgtcagcagcagtgatgcaggactcggcagcgagaatgaa
agtgaggctgcgaccatcgataccggccccgcggcgtcagtctgtgacattccctttgtc
cccccggatgtgtctgtggtctcgagtctgatcctgcatcacgtccccgccgcccgcctc
gttgaggacctgggacacgagctgacctacgtcctgccgtacaacgccgccaaggacgga
gccttcgtggagctgttcaaaaacctggaccagaagttggccgaactcagcatctccagc
tacggcatctctgacacgacactagaggagattttcctgaaagtggccgaagataatgga
gtggacactgaagtaccgtcagacggaacacttcctgttccgaggaggaggaggacacat
gccttcggaggaggagaccaccagagctgcctgagaccgttaacagaggacgacagcaac
gactccgatgtagaccctgagagcagggagacggactggttgagcggttctgaaggtaaa
ggctcgtatcaggtgagggggtggagcctgaagaggcagcagtttgtggctctgttgtgg
aaacggttcctgaacgctcgccgctccaggaagggcttcttcgctcagatcgttcttccc
gccgtcttcgtgtgcatcgctctcgtcttcagtctcatcgtccctccgtttggaaaatat
cccagtttggagctgcagccctggatgtatgaggaccaggtcaccttcatcagtgacgat
gctcccagagacgccaacatgcaaggcttattaaatgctctgctggacgctccaggcttc
gggactcgctgcatggacggacatccaattcaagaagcaccatgtacgatgggagacgag
gactggcacacccccgaagtccctgagagcgtccagcagctgttcagctccaggaactgg
agcatggaggatccgtctccggcgtgtttctgcagctgtgacggcagaaagaagatgctt
cccgactgtcccccaggagctggaggtctgcccccacctgagatgaagctgagtgccact
gacaccttgcagaacttgacgggacgaaacatctccgactacctggtgaaaacttacgca
cagatcattggcaagagcttgaagaacaaagtgtgggtgaacgagttcaggtacggaggc
ttctcattgggtgccaggagcactcaggtcctcccaccggccaatgagatcgatgacgcc
attgaacgggtcagaaagatctttgagttacagaagggagctgctgccgatcgattcctc
gacagtttgtcaggtttcatcaacggtttggacacgaagaacaacgtcaagatctggttt
aataacaaaggctggcacagcattggagcgttcatcaacgtgatgaataacggaatcctg
agagcaaacctgccccgaggtcacgaccccagcaagtttgggatcagggcgtttaaccat
cctctgaacctgaccaaggagcagctgtcgcaggtcgcactggtgacgacctctgtggac
gtcctggtgtccatctgtgtgatctttgccatgtccttcgttccggcaagcttcgtggtc
ttcctcatccaggagagagtcaataaagctaaacacatgcagttcatcagcggagtgcag
ccgctgctctactgggtggccaacttcacgtgggacatgtgtaactacattgtaccagcg
acactcgtcatcttcatcttcatctgtttccaacaaaaagcctacgtttcggccaccaac
ctgccggccctggctctgctgctgcttctctacggctggtcaatcacgccgctcatgtac
cccgcctccttcttcttcaccatcccgagcacggcgtacgtcgtcctcaccagcgtcaac
atcctcatcggcatcaacggcagcatctcgaccttcgtcatggagctgtttggaaacaac
gagatcggaggaatcaacgacatcctgaagaacgtcctcctcatcttcccgcacttctgt
ctcggtcgaggactcatcgacatggtgaagaatcaggccatggccgacgccctcgagaga
tttggtgagaacaggttgcgctctcctctcgagtgggacatggtcggaaaaaacctgttc
gccatggcggtggagggagcggtcttcttcatcatcaccgtcctgatccagtacaggttc
ttcataaagcccagttccgtcagtaaactcactaaactcgctccacttggcgacgaggac
gaggacgtagcccgagagagacagaagatcgtccacggccacggacacggagacatcctg
gagctgcgacagctcacaaaggtgttcaagaggaaacagaaaccggccgtggatcgacta
tgtgtcgggattccacctggagagtgtttcggtctcctcggcgtgaacggagctggaaag
acgacaacttttaagatgctcacaggagacacggtagtgacgagcggagaggcgttcctg
gctgggaagagtatcctgagggagatcgatgaggtccatcagaacattggttactgtcct
cagtttgacgccatcaacgagctgctgacaggaagagaacatctggagctgtacgccgtc
ctgagaggagtccccgagaaggaagtctgtgatgtggcggactgggggatcaggaagttg
ggtctcctgaaatacgctgataaagcagcaggaagttacagcggaggaaacatgaggaaa
ctgtccacagccatgtctctgatcggagcgccaccagtcgtcttcctggacgagcccaca
accggcatggaccccaaagctcgccgggcgctctggaactgcatccacagcgtcatcaag
gagggacgctccgtcgtcctcacctcacacagtatggaggagtgtgaggctctgtgtacc
aggatggccatcatggtgaacggcaggttcagatgtctcggtagcgtccaacacctgaag
aacaggttcggtgacggctacaccatcatcctgcgggtggcggggcccgaccctgacctg
ctgcctgtcatgaagttcattgagagcgagctgagcggcagcacgctgaaggagaaacat
cgcaacatgctgcagtaccagctgccgtcatcgctcaccttgctcgctcacatcttctcc
atcctcgccaaaaacaaagagacgctgaggatcgaagactattccgtcactcagaccacg
ctcgaccaggtgtttgtgaactttgcaaaggaccagagtgacgactatcactccaaagac
tccgtgagacgaaaagacgtgtccatcgaggtcccgacgctgagctccgcccccggagca
gcagagggcggcgatgctctgagagagagtgtcatgtga
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integrated database retrieval system
