Hippoglossus stenolepis (Pacific halibut): 118112423
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Entry
118112423 CDS
T08308
Symbol
pcdh18b
Name
(RefSeq) protocadherin-18b isoform X1
KO
K16499
protocadherin delta 2
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
hsp04515
]
118112423 (pcdh18b)
Cell adhesion molecules [BR:
hsp04515
]
Cadherins
Protocadherins
118112423 (pcdh18b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Cadherin_2
PAG
Cadherin_C_2
TMEM154
BBS1
Motif
Other DBs
NCBI-GeneID:
118112423
NCBI-ProteinID:
XP_035017602
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All DBs
Position
7:1843169..1854054
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AA seq
1243 aa
AA seq
DB search
MCAQKMGAKMMQAKGNIFSPALLQLLLLVALTHGATGKTLKYKVYEEQKVGTVIARLRED
VAGVLSKLPSSLTFRFRAMQRGSTPFLSVREEDGEISIGTKIDREKLCEKNLNCSIEFDV
VTLPTEYLQLFHVEVEVLDINDNSPHFSRSIVPVEISESASVGTRIPLDGAVDADVGENA
LHTYSLTPNNFFKIEVRTRTDGAKYAELVVMRELDREVLSSYQLQLTASDNGVPPKSGSA
LVKISISDSNDNSPAFDEQAYIINLLENSPLGTLIIDLNATDPDEGTNGKIVYSFSSHIP
PKILETFKINPENGQITLIKKVDYESTASYELDVQAQDMGPNSIPGLCKIVVKVVDVNDN
KPEININLMTPGKEEVAYISEGAPVDTFIALVRVDDSDAGLNGEVICRLHGHGHFRLQKT
YEKNYMILTNISLDREKRSEYSLTVIAEDRGSPSLSTIKHFTVQVLDENDNPPRFEKSHY
EVFKSENNSPGAYLMTVVASDPDLGTNGQVTYTIIDALVQGSPISTYVTIDPSNGAIYAL
RSFDHEDVSRIAFTIQARDGGNPSLSTNTTVLLTVLDENDNPPIIHSPSLQNHTAELLVW
KYASPGQLITALKVTDRDAGANGELSCAIVGGNEDMLFVMDARRCELRTNASLEQAPRDV
MELKVEVQDRGTSRLSTGALLRLSLQETMDILPPLYPTGTSQGSLDLSLIVIISLGAVCA
LLLIVMVMFATTRCTREKKDPRHNYNCRVAENSYQNHPKKPARQIHKADITLVPTVNGTL
PVRAHPRSPSASPAPERGTLGSRQSHHSRQSLNSLVTISSNHVPENFALELAHATPPVEQ
VSQLLSMLHQGQYQPRPSFRGNKYTRSYRYALNEMDKFSLKDSGRGDSEAGDSDYEPGRE
SPMDRLLGEGFTEIYAPDGQHRTHAAMRLCTEECRVLGHSDQCWMPPLASPASSSSDYRS
NLYIPGEEARQVTDLSQEKTPQPCTDTVTARNQSFSTFGKDLGGEDGGEEEGGEDSRGDR
DEDLCGTTSLLSEMSSVFQRLLPQGLDSFVQVNEKDKGTSLSGVGVPMTGSLDRRRGHLP
GKPSPSVHQQGVAAWAANTHFQNPGSSIGPSGHHQGGSYHTLKPSTKLSSQSGNHKGSQA
PKNSPQNSGHPCKPHSSPLLTALVSPTLMQHSPAPVPVQVPLPGPSSKWLPAMEEIPENY
EEDDFDSVLSHLQGKRSDSRHELVDASELVAEINKLLQDVRQS
NT seq
3732 nt
NT seq
+upstream
nt +downstream
nt
atgtgcgcgcagaagatgggagcaaaaatgatgcaagcaaaaggaaatattttctctccg
gcactactccaactactgcttttggtcgcccttacgcacggagccactggtaagactttg
aaatataaagtttacgaggagcagaaagtaggcacggttattgcacggttaagggaggat
gtagccggggttttatccaaactcccgagttcgttgacctttcggttccgcgctatgcaa
cgagggagcacgccgttcttgtctgttcgggaggaggacggggagatcagcatcggcacc
aaaatcgaccgcgagaagctttgtgagaaaaacttgaactgctcgattgaattcgatgtg
gtcacgctcccgacggagtacctgcagctgttccatgtggaagtggaagtgctggacatt
aacgacaactccccgcacttctcccgctccattgtcccagtcgagatttccgaaagcgca
tccgtgggaacgcgaatcccgttggacggcgcagtggatgcagatgtcggagaaaacgct
ttgcacacctactcactgacacccaataacttctttaagattgaggtgagaaccaggacg
gacggggccaagtacgcggagttggtggtgatgagggagctggaccgggaggtgctgtcc
agctaccagctccagctcacagcctcggataacggtgtaccccccaaatctggctccgcg
ttggtcaagatcagcatttctgactccaacgacaacagcccagccttcgatgagcaggct
tacatcatcaatttgctggaaaactctccccttgggactctaatcatcgatttaaacgcc
acagacccagatgagggcactaatgggaaaatagtctactcattcagcagtcacattcca
ccaaagatcctggaaacatttaagataaacccagaaaatggccaaattactcttattaaa
aaagtggactatgaaagcaccgcttcctatgagctagatgttcaggctcaggacatggga
cctaactccatccctggactttgcaaaattgtggtgaaagtggtggatgtaaatgacaac
aaaccagagattaacatcaacctgatgacacctggtaaagaggaggttgcctacatttca
gagggggcccctgtggacaccttcatagctctggtgcgtgttgacgacagtgatgcaggc
ctcaatggtgaggttatttgcaggctgcacggccacggccacttcagactccagaagacc
tacgagaagaattacatgatcctcactaacatctcgttggacagggagaagaggtcagag
tacagcctgactgtcatagctgaggacaggggctctcctagtctctccaccatcaaacat
tttactgttcaggtgttggatgaaaatgacaatcctccacgtttcgagaagagccactat
gaggtcttcaaatcagagaacaactcaccaggagcatatctgatgactgtggtggcatca
gatccagatctgggcaccaatggccaggtcacctacaccatcatagatgccctggtccaa
gggagccctatctccacctatgtcaccattgatccctccaatggcgccatctatgcctta
cgcagctttgaccatgaagacgtcagccgaatcgccttcactattcaggcacgtgatggg
ggaaacccttcactgtccacgaacaccaccgtccttctaactgttttggatgaaaatgac
aacccccccatcatccactccccctccctccagaatcacaccgctgagcttctggtgtgg
aagtatgcatcaccgggtcagctgataactgcgcttaaagtcacagaccgtgatgctggt
gccaatggagagctgagctgcgccattgttggtggcaatgaggatatgctgtttgtgatg
gatgcccggcgatgtgagctcagaaccaatgccagcctggaacaggcacctcgggatgtg
atggagctgaaggtagaagtgcaagacaggggcaccagtcggctgtccacaggcgccctc
ctcaggctctccctgcaggagaccatggacatcctcccccctctctaccccactggcacc
agccaaggctcactggatctctccctcatagtcatcatctctctaggtgctgtttgtgct
ctactactcatcgtcatggtgatgtttgccaccacccgctgcaccagagagaagaaagac
cccagacataactacaactgccgtgtggcagaaaacagctaccagaaccaccccaagaag
cctgccaggcagatccacaaagcagacatcaccctggtcccaactgtcaatgggactctg
cctgtccgggcacacccacgctccccgtcagcctctccagcacctgagaggggcaccctg
ggtagcaggcagagccatcatagccgccagtccctcaacagcctggtcaccatctcctcc
aaccatgttccagagaattttgccctggagctggcccacgccacacctcctgtagagcaa
gtctcacagcttctgtccatgctccatcagggtcagtaccagccacgaccaagcttcaga
ggcaacaaatacaccaggagctacagatatgccttgaatgagatggataagttcagtctg
aaggacagcggtcgtggagacagtgaggctggggacagcgactacgagcctggcagggag
tcacccatggacaggctccttggtgagggctttactgagatatatgcccctgatggccag
cacagaacgcatgcagctatgaggctctgcacagaggagtgtcgtgttctgggtcactca
gatcagtgctggatgccccccttggcctcaccagcctcatcatcctccgactaccggagc
aacctctatatcccaggggaagaagcccgccaagtaactgacctctcgcaggaaaagacc
ccacagccctgcacagacactgtgactgcccggaaccagagcttctccaccttcggcaag
gacctgggcggtgaggacggtggagaggaggaggggggagaggacagcaggggggacaga
gatgaagacctgtgtgggaccacctcactgttgtcagagatgagcagcgtgttccagagg
ttgctaccccagggtctggactcctttgtccaggtcaacgagaaagacaaagggacaagt
ctgagtggtgtgggtgtgcctatgactgggtctttggatcgcaggaggggccatctgcct
ggcaagcccagcccctctgttcaccagcaaggcgtggcagcctgggctgccaatacccac
ttccagaacccgggaagcagcatcggtccatctggccatcaccagggtggcagctaccac
accctgaaacccagcaccaagctcagctcccagagcggcaaccacaagggctcgcaggca
cccaaaaacagtcctcagaacagcggccacccctgtaaaccccacagtagccctctgctc
acagcactggtcagtcccactctgatgcagcattccccagcccctgtgccagtacaagtg
ccgctccccgggccctcctccaagtggttgcctgcgatggaggagatcccagagaattac
gaggaggacgattttgactctgtgctcagccaccttcagggcaaacgcagtgacagcaga
catgagctggtggatgccagcgagctggtggctgaaatcaacaaacttttgcaggatgta
cggcagagctag
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