Hippoglossus stenolepis (Pacific halibut): 118112540
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Entry
118112540 CDS
T08308
Symbol
ssrp1a
Name
(RefSeq) FACT complex subunit SSRP1a isoform X1
KO
K09272
FACT complex subunit SSRP1/POB3
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hsp03000
]
118112540 (ssrp1a)
03036 Chromosome and associated proteins [BR:
hsp03036
]
118112540 (ssrp1a)
Transcription factors [BR:
hsp03000
]
Eukaryotic type
beta-Scaffold factors with minor groove contacts
HMG2-related
118112540 (ssrp1a)
Chromosome and associated proteins [BR:
hsp03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
FACT complex
118112540 (ssrp1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PH1_SSRP1-like
Rttp106-like_middle
SSrecog
POB3_N
HMG_box
HMG_box_2
HMG_WDHD1
SSRP1_C
YABBY
FERM_C1_MyoVII
DUF4543
Motif
Other DBs
NCBI-GeneID:
118112540
NCBI-ProteinID:
XP_035017801
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Position
7:complement(14890328..14903253)
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AA seq
714 aa
AA seq
DB search
MGDTLEFSDIYQEVKGSWNDGRLRFSKQNVVYKSTKTGKVDSISAGDLNLAQWRRVCLGH
GIKLGTSSGNFYKYDGFRDTDFEKISEFFKANYKVELTEKDMCVKGWNWGTAKFSGPQLS
FEVNDNSAFEIPLSNVSQCATGKNEVTLEFHQNDDTEVSLMEVRFYVPPSQADERQDPVE
AFAQNVLCKADVIQATGDAVCVFKELQCLTPRGRYDIRIYPSFLHLHGKTFDYKIPYTTV
LRLFLLPHKDQRQMFFVISLDPPIKQGQTRYHFLILLFSKEEELSLTLNMSEEDVERRFE
GKLSKNMSGSLYEMVSRVMKSLVNRKITVPGNFQGHSGAQCITCSYKASSGLLYPLERGF
IYVHKPPVHLRFEEISCVNFARGTTTTRSFDFEIETKQGNQYTFSSIEREEYGKLFDFVN
AKKLNIKNRGFKEKKGMKGNKDEYSDSDDDQHDAYLERMKAEGKIREEGNDSDESDGGSD
ESFNPGEEDDDIAEEYDSNASASDSSEDGDESGDEGEKKKKVKKEKVVKEKKERKPRKEK
KQKDPGAPKRPMSAYMIWLNASRERIKSENPGISITEISKKAGEMWRQLEKEDKEEWETK
AGEAKRQYEKAKKEYKESGGGIGVGVSPSSSKKESKKSGGKKDEKKRKSAGGEKEKERGG
GNDSFKSREFIETSEESSSDSDHKSKSKRKKKKKQESEEEEEEAASTSSVEESD
NT seq
2145 nt
NT seq
+upstream
nt +downstream
nt
atgggagacacactggagttcagtgacatttaccaggaggtcaaaggctcctggaacgac
ggccggctgcgcttcagtaagcaaaatgtggtttataagagcaccaagacggggaaggtg
gacagcatctcggctggtgacctcaacctggctcagtggagacgagtgtgtttaggtcac
ggcatcaaactgggcaccagctcaggaaacttctacaaatacgacggcttcagagacacg
gactttgaaaagatctccgagttcttcaaggcgaactacaaggtggagctgacagagaaa
gacatgtgtgtgaagggctggaactggggaacagccaagttctcaggaccacagttatca
tttgaagtaaatgacaactcagcctttgagatcccactgtccaacgtctcccagtgtgcc
acagggaagaatgaagtcactctggagtttcaccagaatgacgacacagaggtgtcgctc
atggaagtccgattctacgtccctcccagccaggctgatgagcgacaagaccctgttgaa
gcatttgcccagaatgtgttgtgtaaggccgacgtgatccaggccacaggagacgctgtg
tgtgtcttcaaagaactgcagtgtcttactcccagaggaagatatgacattcgtatctac
ccctccttccttcacctccatggtaagaccttcgactacaagataccctacactactgtc
ctccgtctattcctgctgccacacaaggaccaaaggcagatgttctttgtgatcagtctg
gatcctcccatcaagcagggacagacgcgttatcattttctgattctgctcttctccaag
gaagaggaactcagcctcactctcaacatgagcgaagaagatgtggagcgtcgctttgag
ggcaaactcagtaaaaacatgtcggggtcactgtacgaaatggtcagcagggtgatgaag
tcgctggtcaaccgcaagatcactgtgcctggaaacttccaaggtcactctggggctcag
tgcatcacctgctcctacaaggcatcctcaggcctcctctacccgctggagagaggtttc
atctacgtccacaagccgcccgtgcacctgcgtttcgaggaaatctcctgtgtcaacttt
gccagaggaaccaccacgacacgatcgttcgactttgagatagagaccaagcagggaaac
cagtataccttcagcagcattgagagagaagaatacggcaaactgtttgactttgtcaac
gccaagaagctcaacatcaagaacagagggttcaaagagaagaagggcatgaaaggtaac
aaggacgagtacagcgactctgacgacgaccagcacgatgcttatctggagaggatgaag
gctgaaggcaagatcagagaggagggcaatgacagcgacgagtcagacggtggaagcgat
gagtcgtttaacccgggagaagaagacgacgacatcgcagaagagtacgatagcaatgcc
tcagcaagcgacagcagtgaagacggcgacgaaagcggcgatgagggtgagaaaaagaag
aaggtcaagaaagaaaaagtagtgaaggagaaaaaagaaaggaaaccacgcaaagagaaa
aagcagaaggaccccggcgcacccaagaggccgatgagtgcctacatgatttggctgaac
gccagtcgtgaacgaatcaagtcagagaatccaggaatctccatcaccgagatttcaaag
aaggctggagaaatgtggagacaactggaaaaagaggataaagaggagtgggaaacaaag
gcaggagaagccaagaggcagtatgagaaagcaaagaaggagtacaaagagagtggtggt
ggcattggcgttggcgtctcaccctcaagttccaagaaggagagtaaaaaatcaggaggt
aaaaaagacgagaagaagaggaagtctgctggtggagagaaggaaaaggagcgaggaggt
ggcaacgacagcttcaagagccgcgagtttatcgagaccagcgaagagagttcatcagac
tctgaccacaagagcaagtccaagaggaagaagaagaagaagcaggaatcggaagaagag
gaggaagaggcggcttccacatcctcagtggaggagtccgactaa
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