Hippoglossus stenolepis (Pacific halibut): 118112631
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Entry
118112631 CDS
T08308
Symbol
pcdh11
Name
(RefSeq) protocadherin-11 X-linked isoform X1
KO
K16498
protocadherin delta 1
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03273
Virion - Lassa virus and SFTS virus
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03273 Virion - Lassa virus and SFTS virus
118112631 (pcdh11)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
hsp01009
]
118112631 (pcdh11)
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
hsp04515
]
118112631 (pcdh11)
Protein phosphatases and associated proteins [BR:
hsp01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
118112631 (pcdh11)
Cell adhesion molecules [BR:
hsp04515
]
Cadherins
Protocadherins
118112631 (pcdh11)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Protocadherin
Cadherin_CELSR2_9th
Cadherin_2
TMEM154
DUF6249
Motif
Other DBs
NCBI-GeneID:
118112631
NCBI-ProteinID:
XP_035018000
LinkDB
All DBs
Position
7:14373796..14498737
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AA seq
1266 aa
AA seq
DB search
MDLASQAHVLGVLLTCGFLLCWAQERDYTVKEEQPENVRIGNLRKDLDLNLDPNIRLSSP
LQFKPVYKTGDVPLVRVEANTGEIFTTNHRIDREKLCSGVFAEKRCYYEIEVAVLPDEIF
RLVKIRFLIEDVNDNAPLFQSTVINISIPENTAINTRYPVPSAFDPDVGINGIQHYELVK
SVSEFGLDIIETPEGDKWPQLIVQQNLDREQKDTFVMKIKVEDGGNPPKSSTAILQVTIS
DVNDNRPIFKDSELEVTVPENAPMGTSVAQLHATDADLGSNAQIHFSFSNQISASTKRHF
AIDSSTGLITVKQPLDREVTPVHKLIVLASDGSSTPSRATVTVNVTDVNDNVPSIDTRYI
INLVNGTVLLSENAPLNTKIALITVTDKDADLYGKVACYTDHDVPFRLKPVFNDQFLLET
AAPLDYETTREYAIKIVASDRGTPPLNTSAMVLIKIKDENDNAPIFPQPEIQLSIPENND
PSTQLIKISATDADSGRNAEIIYTLGPDTPDGFNIDRRSGILSVGKRLDREKQERYSFTV
IARDNGSTFLQSNVTVRLIVQDLNDNSPAFTHPEYNFYVPENLPLFGTVGLITVTDADAG
DNAVITLSILNGKDNFIIDPQTGVIKPNITFDREQQSSYTFMVKAVDGGHPPSSSYAKVT
INVVDVNDNRPVFVIPSSNYSYDLVRTTTTPGAVVTRVFAIDNDTGMNAELQYSIISSII
ITSRVSPRGLFAIDKTTGNITLQEKILTADQGLHRLVVKVKDLGQPESLHAIALIHLFVN
DTVSNATFIQEQLRKSMETPLDRNIGDSEVTPQANGYVIVVIAIIAGTMTVILVIFVTAL
VRCRQTPRHKVVQKGKQSGEWVSPNQENRQIKKKKKRKKRSPKSLLLNFVTIDESKHDDP
SHEHVNGTLDLPVELEEQTMGKYNWATTPTTFKPDSPDLAKHYKSASPQPTFQIKPETPV
APKKHHVIQELPLDNTFVVGCDSLSKCSSTSSDPYSVSECSCQGGFKTAGQITTRQNPSQ
TPETSFNSPPPICPHKEACQLGKITSVNTQRRVTFHLPDGSQESCSDSGLGDPEPSSTAS
TTQPLPLSFPQEEYYEQTSPNSRTEGDGNSDPESTIEVNLQKALAEASETCTQECLILGH
SDSCWMPPALAQFQGPGSNSPTSNPAVIIGTLPSFGFQQSCARGARANMGGMGVMDGRHT
LGRSVPKKDELDKGINRPQFYNTLDRHCSSKKEDTIKVIPLASFSPLGQQTPTGGGSSSF
LHEHQL
NT seq
3801 nt
NT seq
+upstream
nt +downstream
nt
atggacttagcaagtcaggctcatgtgctgggggtcttgctcacctgtgggttcttgcta
tgctgggcccaggagagggactatacggtgaaggaggagcagccagagaacgtccgcatc
ggcaacctgcgcaaggacctggacctcaacttagaccccaacatcaggctatcctcgccg
ctgcagttcaagcctgtgtacaagacaggtgacgtgcctttggtgagagtggaggccaac
acaggggagatctttaccaccaatcaccgaatagaccgggagaagctttgctcgggggtc
ttcgcagagaaacgctgctactatgagattgaggtggccgtgctgccggacgagatcttc
cgattggtcaagatccgcttcctgatcgaggatgtgaacgacaacgcacccctcttccag
tccactgtaataaacatctcaatcccggagaacacagctatcaacacccgatacccagtg
ccctcggcatttgaccctgatgtagggatcaatgggatccaacactacgaactggtcaag
agtgtcagcgagtttggcttagacatcatcgagacccccgaaggtgacaagtggccacag
ctcatcgttcagcagaacctggaccgggagcagaaggacacgttcgtcatgaaaataaag
gtagaagatggtggaaatcctcccaagtccagcactgccattctccaagtcaccatctct
gatgtcaatgacaatcgccccatcttcaaggacagtgagctggaggtcacggtaccagag
aatgcccccatgggaacatcggttgctcagctccatgccacagatgccgacctgggttct
aatgcacagatccacttttccttcagcaaccagatctctgcctccaccaaacgtcatttt
gctattgacagctctacaggactgattactgtgaagcagccactggacagggaggtaact
cctgttcataaactcattgtcctggccagcgatggcagctctaccccgtccagagccaca
gtgactgttaatgtaacagacgttaatgacaatgttccctccatagacactcgctacatt
atcaacctggttaatgggactgttctgttgtctgagaatgctcctctcaacaccaaaata
gccctaattactgtaactgacaaggatgcagatctgtatggcaaagtagcttgctacact
gaccatgatgttccattccggttgaagcctgtctttaatgatcagttcctactagagaca
gctgcccccctagattacgagacgacacgagaatatgcaattaagatagtggcctcggat
agggggacgccccctttgaacacttcagctatggttttaattaaaatcaaggatgagaac
gacaatgcacccatcttcccccagccggaaatccaactttccataccggagaacaatgac
ccctctacacagttaataaaaataagtgccactgatgcagacagcggacgtaatgctgag
ataatttatactcttggccccgacacacctgatgggtttaacatagacagacggtcagga
atcctctctgttggcaaacgactggacagagagaagcaggagaggtactcattcactgtc
atagcgagggacaatggctccactttcctacagagcaatgtcactgtcaggctaatcgtc
caggaccttaatgacaacagtccagctttcacacaccccgagtacaacttctatgtgcct
gagaacctgcctctctttggaactgtgggcttaatcacagtgacggatgcagatgcagga
gataacgctgttataactctgtccattttgaacggcaaagataatttcatcatcgaccct
caaactggtgtgatcaagcccaatatcacctttgatagggagcagcagagttcctacaca
tttatggtcaaggcagtagatggaggccaccctccaagctcctcctatgccaaggtcacg
atcaatgtagtggacgtaaatgacaatcgccctgtgttcgtcatcccatcctccaattac
tcatatgacctagtgcgaaccaccaccacccctggcgctgtggtcaccagggtgtttgcc
attgacaatgacacaggtatgaatgctgagctgcagtacagcattatcagcagcatcatc
atcacatctagggtctctcctcgaggtctctttgccatcgacaaaacaactggtaacata
acactacaggagaaaatactgacagccgatcaggggctgcataggcttgttgtcaaggtg
aaagatctaggccagcctgagtcattacacgctatcgcgcttattcacttatttgtcaat
gacactgtgtcaaatgctaccttcattcaagagcagctgcgaaaaagtatggagacaccc
ttggaccgtaacattggggacagtgaggtaacacctcaagccaatggatatgtgattgtt
gtcatagctatcatagcagggaccatgactgttatcttggtgatatttgtgactgccttg
gtgcgctgccggcagacacccagacacaaagtggtgcagaagggcaagcagagtggtgag
tgggtgtcccccaaccaagagaaccgtcagatcaagaagaagaagaagagaaagaagcga
tcccccaagagcctcctcctgaactttgtgaccatagatgaatccaagcacgatgaccct
agccatgagcatgttaatggtacgctggatctccctgtggagctagaggagcaaaccatg
gggaagtacaactgggccaccacgccaaccaccttcaaacccgacagcccagacttagcc
aagcattacaagtcagcgtcccctcaacctacatttcaaatcaaaccggagactccagtg
gccccaaagaaacaccacgtgatccaggagctccccttggacaacacgttcgtagtcggc
tgtgactcactctccaagtgctcatcgactagctccgacccatacagtgtctcagagtgc
agctgtcaggggggattcaagactgcggggcaaatcaccacccgacagaatcccagccag
acaccggagacgtcttttaactcgccaccccccatttgtcctcataaggaggcctgtcaa
cttggcaagattacctctgtgaatacccagcgtcgtgtgacgttccatcttccagacggt
tcccaggagagttgcagtgatagcgggctgggggacccagagccgagcagcacggccagc
accacccagcctctccccctcagcttcccccaggaggagtactatgagcagacgtcacct
aacagccgcaccgagggagatgggaactcagaccctgaatccaccattgaggtgaacttg
cagaaagccttggctgaggcctctgagacctgtacccaggagtgtctgatactgggccac
tcggacagctgctggatgcctccagccctggcccagttccagggtcctggcagcaacagc
cccacctccaaccccgccgtcatcattggtaccctcccctcttttggcttccagcagagc
tgtgcccgaggagccagagctaacatgggaggcatgggggtcatggacggccgccatacc
ctgggcaggtctgtgcccaaaaaggatgaactggacaaagggatcaaccgaccgcagttc
tacaacaccctggacagacactgcagtagtaagaaggaggacaccatcaaggtcatcccc
ctggcgagtttttcccccctcggtcagcagacgcccaccggcgggggcagcagctctttc
ttacatgagcaccagttgtaa
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