Hippoglossus stenolepis (Pacific halibut): 118112759
Help
Entry
118112759 CDS
T08308
Symbol
si:ch211-186j3.6
Name
(RefSeq) LOW QUALITY PROTEIN: neural-cadherin
KO
K27892
neural-cadherin
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
hsp04515
]
118112759 (si:ch211-186j3.6)
Cell adhesion molecules [BR:
hsp04515
]
Cadherins
Cadherin related
118112759 (si:ch211-186j3.6)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin
Laminin_G_2
Laminin_G_1
Cadherin_CELSR2_9th
Ig_Shg
EGF
Cadherin_pro
CADH_Y-type_LIR
hEGF
Y_Y_Y
Big_9
cEGF
He_PIG
Motif
Other DBs
NCBI-GeneID:
118112759
NCBI-ProteinID:
XP_035018198
LinkDB
All DBs
Position
1:27934330..28221036
Genome browser
AA seq
2990 aa
AA seq
DB search
MEVLHDKGKRGETPPPPWTSAQHERFRAAEPVRHPVMMWVAFLPFLASCALGNKTAEQVP
FFHGHVFENSSPGSRVNGLSVPLKRLDSQRLCGTEGSGSAAAHFKLLGDGSDNFRVFAHH
KRGNILLKTSGVLDREERSEYALGLGLCCGQCATLTREDGEESPVVAEVASIKVDVLDTN
DHQPTFAGNDVKLSLDDATALRTAIYGVTARDEDSGKNAELIYFALPKNGSFYAVPKTGD
ILLVDSILGLDEPIRFKVFARDRGWPPRTSECVSVEISPRQWPMVPPVDPQPGKRKPTSQ
VKVPARRSRSVLESDSPVFINVSEDAGIGSVVMNLSPVRFQSATFELVEPDAESSPVSVS
RDSGDIVISRRLDRETEPLVEISVKVQDKRGSEWYFIRVEMTVTDVNDNVPDWSMVPAPY
LAVVSPDAPAGSLVYKLHAQDGDEGNNGEVEYFLSDGGDGRFEVDRKSGQVRTTGLPLQR
DREYLLTVVAADRLGSRSAPAVVSVVAGARPPQFSNASFTIAIPENTPEGQPFLVTPAVS
FQDKPISYSLLINPSSLFSISAETGEISLTRPIDYESDQHRYLLLVRASEGLDSMSSAAE
VRVVIVDENDCVPEFLQSIYSKDGVPETVTTATSLLQVSANDCDSEENAELTYYTLSQDF
TISPHGTIFPVGPLDYERPNHLYEFVVMAIDKGEVPRTGTTTVRIRMANVNDEEPEFSQH
VYRTFVSEDAGPNTLVATVLAKDPDGDGITYRIATGNEEGNFVIDSQKGLIRLRSSPPPR
LQGVEYVLNVTATDDNASGGPQALSSTAQVIVGVDDVNNNKPVFEKCQQYRESTSVLENQ
PAGSFVLQVHAVDADEGSNGRVTYGFMHKDSTIPAFSIHPETGVIVTARKFDRERQREYA
VTVTATDQAADPLIGICQLNILILDQNDNSPKFENIRYEYFLREDTMIGTSFLRVAAHDD
DFGTNAAIMYSMSSEQPEYLRVNPLTGWVYVNQPISQRTYITREIVATDGGNRSSSVELA
VTITNVKNQPPHWEKDSYSVVIPENTVRDTPIVTIKATSPLGDPRVTYNLEDGMVPETNM
PVRFYLTPNREDGSASILVAEPLDYETTRNFMLRVRAQNVAAVPLAAFTIVYVNVTDVND
NVPFFTSSIYEASVTEGAETGTLVVQVSANDLDLGLNGKISYSLLEDRSWDHQYFRIDPE
LGFIYTQTVFDRETKSSYLLEVQSVDGWESARPGKHGQSNSDTAYVRVFISDVNDNKPVF
AQTSYEVDVDEDADLGFAILTVSANDGDEGGNAKLRYQITSGNTGGVFDVEPEVGTIFIA
QTLDYEQNKRYKLHVLASDGKWEDYTTVTVNVVNKNDEAPVFTVNEYYGSVTEELDGSPV
FVLQVTASDPDKDADPEALRYSLHGQGAESEFIIDEVTGKIYAQRTLNREERAVWRFVVL
ATDEGGEGLTGFTDVIINVWDINDNAPVFTCAPSCQGDVAENSVVGTSVMEMTATDLDDS
AVGQNAVLSYRIVGSLDGTNIEVGGGVPTFSEMFTINPTTGTISVAMGGLDREQVESYLL
VVEARDGGGMTGTGTATIQIKDVNDHAPRFTDHSCLARISENADPNAEVLDLAAEDRDTG
ENAQLTFSVVSGDQEQKFYMVSHKQEQRGTLRLKKRLDYERHSEQRFNLTLKVEDLDFSS
LLHCVVEVEDYNDHAPVFIPHFLSLAPLPEDISVGTSVARLVASDSDSGQNRDITYSLSE
DSDPEGLFTIDQSGVLSVAQPLDRESIPQHHLIVIATDHGVPRLSGSATVQLPLLDVNDN
GPEFEAAYSPMVFENVAGPQVVRLNQTSTLLRAVDQDSPENGPPFHFAIPPEYRHNNDFY
LQDNLNGTATLTALRMFDRERQKEFLIPIIMSDSGRPAKTVTTTLTVTIGDQNDHAHVAG
EKKIFINSHRGRMPTTVLGKVYSPDPDDWDNKTYVFEGHVPSYFILNKRTGFLIIKENAP
PGTYQFQVRVSDGIWPDAVSTVTVHVRELRDEAIYNSGSLRLADITAKEFIELRGKQRSR
YELLVDFLSEMLSVPPDDVNIFSLIDVRERILDVRFAVQGGPSFLQPEKMHGYLAAHKQK
LQSFLQVSVFQVRADECPSSECAGTGGCTSVLNVRDTPTVVDCGTMSLVSVTVESTAVCS
CTGREQSHQPCAAYPRNPCFNGGVCVDTQHGYRCQCPAQFEGPECQQNRHGFHGNGYAWF
PPMMPCFESHVSMEFITDVADGLLLYSGPLAQLQAWDHEDFMAIELIDGTPTLKINHGSG
TVVLQLPGNVNVADRRWHRLDVRSNSKEVRFTLDRCSGAAVMEMEGLGSWLTTEDHSSCE
VTGVTPNTDRHLNMSQVLQLGGVNEDIPYIYPQLQHKHFTGCIRNFIVDSKLYDLGSPAD
SQSSSPGCLTTDSSCVNMGYPSCGHRGRCHGEWGSFSCQCVPGYTGHQCEEEVPEFSFDG
HSHVHYQLASPLPARKTWVQVLVRTRKHSSTILTLISKEQSEYLRLEIFQGLLCIFYNLG
DGDYNVTLPTYRLDNGEWHEVLLDRHDNEMTLKLDGGGGQREVTGSQGRSREIIIDPSVV
ILGNNFPSAVNKSFQGCMRDLRLNGRYMPMDSQPRDGVSQVSVQGLSLGCSSDSCKRNQC
SAPFTCVDLWRVHECRCPPGHMIRVNGSRKSCVYTLCATRPCHRGTCVAQSPSKFTCHCP
EGYRGRHCETPLAIYREDVGLSFSSLFAICICFMALLVLLLGIFLYTRWRSYKGLKEGVY
HVSAHHDGWEDIRENVLNYDEEGGGEEDQNAYDMAELQKSLQPSPAQSVQYCRSRALHHP
PPPHHHHHMLHQAXPAPPSAQPLDSHSRTASSTTLPPSAASTSSTATTTTSIRRDVPPAR
LPAQGQARPSQLARRSLSFSSQDLARYLCEIIRDADQHPDTGPFDSLQVFSTEGGGSPAG
SLSSFSSAGLDGGSGGDGGGEARREETLGEWGPRFEKLRALYERAEASDL
NT seq
8973 nt
NT seq
+upstream
nt +downstream
nt
atggaagttttgcatgataaaggaaaaagaggagaaacacccccccccccatggacctct
gcgcagcacgagcgctttagagcagcggagcctgtgagacatccagtcatgatgtgggtc
gcgtttttaccctttttggcttcgtgcgcactcgggaataagaccgcggagcaagtgccg
ttctttcacgggcatgtgtttgagaactcgtctccgggctcccgtgtcaatgggctgagc
gtcccgttgaagcggctcgactcgcagagactgtgcggcaccgagggatccggctcagct
gcagcgcactttaaactcctgggggacgggagcgacaatttccgtgtgtttgcgcaccac
aaacggggaaatattttactcaagacttctggggtcttggaccgagaggagcggtctgaa
tacgcactgggtctgggtttgtgttgcgggcaatgcgcgacactaacccgggaggatgga
gaggagtccccggtggtggctgaagtggcgtccatcaaggtggacgtcctggacacgaat
gaccaccagcctaccttcgccggtaacgatgtgaaactgagcctggatgatgccactgcg
ctccgcacggccatctacggggtcactgcgcgcgacgaggacagcggcaagaacgcggag
ctcatctacttcgccctgccgaagaacgggagtttctatgcggtgccgaaaaccggcgac
atcctcctggtggactccatcctcggtctggatgaaccgattcgatttaaagtgtttgcc
cgggaccgcgggtggccaccgcgcacgagtgagtgcgtttcggtggagatcagtccccgg
cagtggcccatggtgcccccggtggacccccaaccggggaaacgtaaacctacatcacaa
gttaaagtaccagcgcgaaggtccaggtcggtgctggagtcagacagccccgttttcatc
aacgtgtccgaggatgcagggatcggttcggtggtgatgaacctgagcccggtgaggttt
cagtcggccacgttcgaactggtggagcccgacgcggagagctcaccggtgagcgtgagc
cgggacagcggggatatagtgatatcacggagactggaccgagagacggagcctctggtg
gagatcagcgtcaaagttcaggataaaagaggttcagagtggtacttcatcagagtggag
atgactgtgacagatgtcaacgacaatgtcccagactggagcatggttcctgctccctac
cttgctgtggtttcacctgatgcccctgcgggctcgcttgtctacaagctccatgcccaa
gacggggatgaaggcaacaacggtgaagtggagtacttcctgtcagatggcggtgatggt
cgatttgaagtcgacaggaagagcggccaggtacggactacaggcctccccctgcagcgg
gacagggagtacctgctgacagtcgtggctgccgaccggctgggcagccgcagtgcccct
gctgtggtctccgtggttgctggagccaggccgccacagttctcaaacgcctcctttact
attgcaatacccgaaaacacccctgaaggacagcccttcctggtcacacctgcggtgtcc
ttccaggacaaaccaatcagctacagcctcctcattaatcccagcagtctcttctccatc
tcagcggagacgggtgagatcagcctgacccgccctatcgactacgagagtgaccagcat
cgctacttgctgctggtgcgagcaagcgagggcctggacagcatgagcagtgcagcagag
gtacgagttgttattgtcgatgaaaacgactgtgttccagagttcctccagtccatttac
agcaaggatggtgtcccagagacggtgacgacagcaacctccctgctgcaagtgtcagca
aacgactgtgactcagaagagaatgcagaattgacctattacaccctgagtcaggacttc
accatttcccctcacgggaccatcttccctgtggggcctctggactacgagaggcccaac
catctgtacgagtttgttgtgatggccatagacaagggcgaggtccctcggactggtaca
accacagtgcgcatccgaatggctaatgtcaacgatgaggagcctgagttctcccaacat
gtataccgcacgttcgtctcagaggacgcgggccccaacacacttgttgccacggtgctg
gcgaaggaccctgatggggacgggatcacgtacaggattgccacaggaaacgaggagggc
aactttgtcattgacagccaaaaaggtttgatccgtttacgctcaagcccaccccctcgc
ctccagggtgtcgaatacgtcctcaacgttacagcaacagatgacaacgcctcaggcgga
cctcaggccctctcatccacggcccaggtcatagtgggagtggatgacgtgaataacaac
aagcctgtctttgagaagtgtcagcagtaccgagagagcacgtcggtcctggagaaccag
ccggcggggtcgtttgttctgcaggttcacgctgtggatgctgacgagggctccaatggc
agggtcacatacggcttcatgcacaaagactccactattcccgcattcagcatacaccct
gaaactggggtaattgtgactgcgaggaaatttgaccgtgaacgccaacgggagtatgcg
gtgaccgtgaccgccactgaccaggcggccgacccgctgattggcatttgtcagctcaac
atcctcatcctggaccagaacgacaacagtcccaagttcgagaacatccgatatgagtac
ttcctccgtgaggacaccatgatcgggacgagtttcttgcgagtggcagctcatgacgat
gactttggcaccaacgcagccatcatgtactctatgtccagtgaacagccggagtacctc
agggtcaaccccctgactggatgggtttatgtcaaccagcccatctctcagaggacctac
atcaccagggaaatcgtggctacggacggagggaacaggagcagttcagtggagctggcc
gtcaccatcaccaacgtgaagaaccagcccccgcactgggagaaggacagctacagcgtg
gtcatcccggaaaacaccgtcagagacacgcccatcgtgaccatcaaggccacctcccct
ctcggggatcccagggtgacttacaatctggaggacggaatggtcccagagaccaacatg
cctgttcgcttctacttgacccccaacagagaggacggctcggcctccatcctggtggct
gagccccttgactatgagaccaccagaaacttcatgctgcgggttcgagctcagaatgtc
gccgctgtgccattggcagccttcaccatagtctacgtcaatgtcacagatgtaaacgac
aacgtcccgttcttcacctcctccatctatgaggcctcggtcactgaaggggcagaaacc
ggaactttggttgtccaggtgtcagccaatgacctcgacttgggtctcaatggcaagatc
tcctactccctactggaggatcgcagttgggaccaccagtatttccgtattgacccggag
ctgggattcatctacactcagactgtgtttgaccgtgagactaagagctcatatctactg
gaggttcagtctgtggacggctgggagtcagcgcggcccggcaaacacggacagtccaac
tctgacacggcgtatgttcgtgtttttatcagtgacgtgaacgataacaaaccagtgttt
gcgcagacatcctatgaagttgatgtggatgaggatgctgaccttggctttgccatcctc
actgtcagtgccaatgatggggatgaaggtggaaacgctaaactgcgctaccagatcact
tctgggaacacaggaggggtatttgatgtggaaccagaagtgggcactatctttatcgcc
cagactctagactatgaacagaacaaaaggtacaagcttcacgtgctggcctcagatggg
aagtgggaagattacaccacggtgacggtaaacgtggtcaacaagaatgacgaggcgcca
gtgttcaccgttaacgaatactacggaagcgtaacggaggagctggatggttcaccagtg
tttgtgttacaggtaacggcgtctgacccagataaggatgccgacccagaggccctgcgt
tactctctccacggccagggtgcagagagcgaattcataattgatgaggtcacaggcaaa
atctacgcccagaggactctgaaccgcgaggagcgcgctgtgtggcgatttgtcgtcctg
gccaccgatgaaggtggcgaaggtctgacgggcttcactgatgtcatcattaacgtttgg
gatatcaatgacaatgcgcctgtcttcacctgcgcccccagctgccaaggagatgtggca
gagaactcggtagtagggacgtcggtgatggaaatgacagccaccgacctggacgactcc
gctgtgggacagaatgccgtgctctcttacaggattgtgggtagtctagatggcactaac
attgaggtgggaggaggagtgccgactttctcagaaatgtttaccataaaccccaccaca
ggaacaatctctgtcgccatgggtggtctggacagagagcaggttgagtcctacctcctg
gtcgtggaggccagagatggtggagggatgactggtactggaactgctaccattcagatc
aaggatgtgaacgaccatgctccacggttcacggatcactcctgcttagcaaggatctca
gagaatgcagaccccaatgcagaggtattggacctcgctgcagaggacagagatactgga
gagaatgcccagctcactttcagtgttgtgtctggagaccaagagcagaagttctacatg
gtcagtcacaagcaggagcagcgtggcaccctgcggctgaagaaacgtctggactatgaa
cgccacagcgagcagaggttcaacctcaccctgaaggttgaagacctggacttttccagc
cttcttcactgtgtggtggaggtagaggactacaatgaccatgctcctgtcttcattcca
cacttcctctctctcgccccgctacctgaggacatctctgtgggaactagtgtggcacgt
ttggttgccagtgactctgattcaggccagaaccgtgacatcacctacagcctatcagag
gactccgatcctgaggggctgttcaccattgaccagtcgggtgtgctctctgtggcccag
cctctggatcgggagagtataccccagcatcacttgattgtcatagcaaccgatcatggg
gttccacgtttatcaggcagtgcaacagtacagctgcctctgttggatgtgaatgataat
ggaccagagtttgaggcggcatactccccaatggtatttgagaatgtggcgggaccacag
gtagtgaggttgaaccaaacatcgaccctcctgcgagctgtagaccaggactctccagag
aatggccccccctttcacttcgccatcccccctgagtatcgccacaacaatgacttctac
ctccaagacaacctgaacggcactgccacactaacagctctgcggatgtttgaccgtgaa
cgccagaaagaattcctcattcctattataatgagtgacagcggccgtccagccaaaact
gtgaccaccaccctgacagtgacgatcggagaccagaatgatcatgcgcatgtggcaggg
gagaaaaagattttcatcaatagtcaccgaggtcgtatgccaaccacagtgcttggtaag
gtctactctcctgacccggatgactgggacaacaagacctacgtctttgaaggacatgtg
ccaagttactttatcctgaacaagcgaacaggtttcttgatcatcaaggagaatgcccca
cccggcacctatcagttccaggtccgcgtgtccgatggaatttggcccgatgctgtctcc
actgtcactgtgcatgtgagggagctgcgagacgaggccatctacaactcgggatccctc
cgactggcagacatcacagcgaaggagttcattgaactgagagggaagcagcggagccgc
tacgagctgctggtggacttcctgtccgagatgctatctgttccacctgatgatgtcaac
atctttagcctaatagatgtgagggagcgaatactggatgtccgctttgctgtgcagggc
ggcccgtccttcctccagcctgagaaaatgcacggttatctggctgcccacaaacaaaag
ctccagtcattcctgcaggtcagcgtgttccaggtgcgggcggatgagtgtccctcttcg
gagtgtgccgggaccgggggctgcacaagtgttttgaatgttcgagacacacccacagtg
gtggattgtgggactatgagtcttgtatctgtgacagtggaatccaccgctgtgtgctct
tgcacgggtagagagcagtcccatcagccctgcgccgcatatcccagaaacccctgcttc
aacggtggagtgtgtgtggacacacagcacggttacaggtgccaatgcccagctcagttt
gaagggcctgagtgccagcaaaacagacacggtttccacggtaacggctatgcctggttc
cctcccatgatgccttgtttcgagagtcacgtgtcgatggagttcatcacagatgtggct
gatggactgctgctgtacagcggtcccttagcccagctgcaggcctgggaccacgaggac
ttcatggctatagagctaatagatgggacccccaccttgaaaatcaaccacggctctggc
acagtggtgctacagttgccaggcaacgtgaacgtggcagacagacgctggcatcggctg
gatgtccgcagcaacagcaaggaagtgcgtttcaccctggatcgctgctcgggagcagca
gtgatggagatggagggtctgggcagctggctgaccacagaggaccactcctcctgtgag
gtgacaggcgtcacacccaacaccgacagacacctgaacatgagccaggtactgcagctc
ggtggtgtgaacgaggacatcccctacatctaccctcagcttcagcacaaacacttcacc
ggctgcatccgcaacttcatcgtggacagcaagctgtatgatttgggctccccggccgat
tcccagtccagctccccgggctgcctgaccaccgacagcagctgtgtcaacatgggctat
ccgtcctgtggccaccggggtcgctgtcacggcgagtggggctccttcagctgccagtgt
gtgcccgggtacacaggacaccagtgtgaagaggaggtccccgagttttccttcgacgga
catagtcacgtgcactaccagttagcatccccgctgccagcccgcaagacgtgggttcaa
gtcctggttcgaacccgcaaacacagcagcaccatcctcaccctgatctccaaggagcag
agtgaatacctgcgactagagatcttccagggcctcttgtgtattttctacaacctcggt
gatggagactacaacgtaaccctgcccacgtatcggctggacaatggggaatggcacgag
gtcctcctagatcggcatgacaacgagatgacgctgaaactggacgggggtggagggcag
cgggaggtcacgggatcgcaaggccggagccgagaaatcattattgaccccagtgtggtg
attctgggcaataacttcccatccgcggtcaacaaaagcttccagggctgcatgagggac
ctacgcctcaatggtcgctatatgccaatggacagccagccgcgagatggggtttcccag
gtcagcgtgcagggcctctccctcgggtgctcgtctgactcctgcaaaaggaaccagtgt
agcgccccgttcacctgcgtcgacttgtggagagtgcacgaatgcagatgtccccctgga
cacatgatccgagtgaacgggtccagaaagtcctgtgtctacactctctgcgccacgcgg
ccttgtcacagggggacctgtgtggcccagtcaccctccaaattcacctgccactgcccg
gagggttacagaggacgccactgcgagacgccactggccatctacagggaggacgtgggc
ctgagcttcagctcgctcttcgccatctgcatctgcttcatggccttactagtgctgctg
ctgggcattttcctctacacccgctggaggagctacaaagggctgaaggagggtgtttac
cacgtctcagcgcaccacgacgggtgggaggacatccgagagaatgtcctcaactatgac
gaggagggaggcggggaggaagatcagaatgcctatgacatggcagagctgcagaagtcc
ctccagccgagcccggcccagtccgtccagtactgccgctccagagccctgcaccaccct
cctcccccccaccaccaccaccacatgctacaccaggcgnnccctgccccgccctccgcc
cagccgctggactcccacagtcggacagccagctccaccaccctgcccccctcagcagcc
tccacctcctccaccgccaccaccaccaccagcatccgcagggatgtcccccctgccagg
ctcccggcccagggccaggccaggccctcccagctggcgcgtcgctccctgtccttctcc
agccaggacctggcacgctacctgtgcgagatcatccgtgatgccgaccagcatccagac
actgggcctttcgactccctgcaggtcttctccactgagggagggggctcgcccgccggc
tccctaagctccttcagctcggcggggctggatgggggcagtggcggggatggaggaggg
gaggcgagaagagaggagacactcggggagtgggggcctcgctttgagaagctgcgggcc
ttgtatgagcgcgcggaggccagcgacctctga
DBGET
integrated database retrieval system
