Hippoglossus stenolepis (Pacific halibut): 118113168
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Entry
118113168 CDS
T08308
Symbol
clstn3
Name
(RefSeq) calsyntenin-3 isoform X1
KO
K22661
calsyntenin 3
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
hsp04515
]
118113168 (clstn3)
Cell adhesion molecules [BR:
hsp04515
]
Cadherins
Cadherin related
118113168 (clstn3)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLSTN_C
Cadherin
Laminin_G_2
Laminin_G_3
DUF5570
Motif
Other DBs
NCBI-GeneID:
118113168
NCBI-ProteinID:
XP_035018498
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All DBs
Position
8:18175734..18197990
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AA seq
961 aa
AA seq
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MDRMSILSFLLLCLTSVANGNKANKHKPWIETEYQGIVMENDNTVLLNPPLFALDKDAPL
HYAGEICGFRVHNGPSGSGSVQFEAVVLDRSTGEGLVRSKEPLDCESQREHSFTIQAYDC
GEGPDGVNSKKSHKATVHVRVNDVNEFSPVFVERRYEASVPEGRLFDRIVRVEALDADCS
PQYSQICFYDIITPNVPFAIDNDGNIKNTEPLDSKHQRVHTFWVTAFDCGKNRAQADAQV
VVTVKPSCKPGWIGWTKRVEYTPGSGSIPLFPSLHLETCQETVWNIQATVELQTGHIGKG
CDRDSYSDRSVRRLCGAVRGEVDLLPPPSPAANWTSALPTLPSSDSSLVFSFNGSNHVAV
VPDSVVSALSGDHFTLQLWMRRGGANIQPSTTQTRGSRKDEETIVCSTVKNDDSFSHYSL
SVHGCRLSLFYWPDVSAARPVKFLWKLEQVCDSEWHHLSLSVQFPSVTLYVDGVTFDPAL
IHDNGAIPNPAPHQRMFIGACWELEEKQKEILNNTIPEGKDSVKYVGGYHGLLSGVTVRP
GSVEPHSVVECLYACREGLDFGDLETLGSGMKVHVNPSQSVLVLEGDDIESFNRAVQQVT
YRNSLRFATPGVRPLKLSTSLRCFNEESCLSLKQLEGYLVVLQPDAPQISLSGVGPHLAR
PAPEFEAPRGVPLFPELRIVCSLSHAVNTAAQGMEGGGQSVMIPLMSDAVAHTLDGCEVQ
PLGEELNPEREELLVDMDVVRERGLEIINTTAYIAITGAESISVYEDVLRSVRYRLAKGS
ARFERRFRLSCSEMNGRYTSNELTLEVNFLHSLDSLYHPSHLLASQQQFLHPSHHAGELS
GHTLPNPHRNSVVPGAATVIIMVCVGFLVVMVILGVFRIRSIHRRGEGAKGAKEGSSQWD
DSALTIIVNPMESYESRMGICTENEGEVEEEEEAAESPDDASDDQRIIIKKEGRDGTARR
Y
NT seq
2886 nt
NT seq
+upstream
nt +downstream
nt
atggacagaatgagtattctctcctttctactcctttgcttgacttcggttgccaatggc
aacaaagccaataagcacaagccatggatcgagacagagtaccaggggattgtgatggag
aacgacaacaccgtgctgctcaatccccctctctttgccctggacaaagatgctccactt
cactatgctggtgaaatctgtggcttccgggtccacaatggtccctctggttcggggtct
gtccagtttgaagctgtggtcctggaccgctccaccggcgagggcctggtccgctccaag
gagccgctggactgcgagagccagcgcgagcacagcttcaccatccaggcctacgactgt
ggcgagggacctgatggagtcaacagcaagaaatcccacaaggccaccgtgcacgtccgt
gttaatgacgtcaatgagttctcccccgtgtttgtcgagcgtcgctacgaggcgtccgtc
ccagaggggcgtctgtttgatcgaatcgtgcgcgtggaggccctggatgccgactgctcc
ccgcagtacagccagatttgcttctatgacatcatcactcccaatgtgcccttcgccatt
gacaacgacggtaacattaagaacactgagccgttggattccaagcatcagcgtgttcac
accttctgggtgaccgccttcgactgcggaaagaaccgcgcccaggccgacgctcaggtc
gtcgtcacggttaaaccgtcctgcaaaccggggtggattggatggaccaagcgtgtcgaa
tacacacccgggtcaggtagcatccccctgtttcccagtttgcatttggagacgtgccag
gagaccgtgtggaacatccaggccaccgtagagctccagaccggccacatcgggaagggc
tgtgacagagacagctactcggacagatccgtgcgcagactgtgtggtgccgtcagaggt
gaagtcgacctcctcccgcctccatctcctgctgccaactggacctcagctctgcccact
ctcccctcctctgattcgtcactggtcttctccttcaacggatccaaccatgttgccgtg
gtgccggattcggttgtctccgcgttgtcaggcgaccacttcaccctgcagctgtggatg
cgaaggggcggcgccaacatccagccctcgaccactcagaccagaggaagtcgcaaagat
gaggagaccatcgtgtgcagcactgtcaagaatgacgactccttctcccactactccctc
tccgtccacggctgtcgcctctctctcttctactggcccgacgtctcggctgcacggccc
gtcaagttcttgtggaaactggagcaggtgtgcgacagcgagtggcatcacctttcgctc
agcgtccagttcccctctgtgaccctgtacgtggacggcgtgaccttcgaccccgctctc
atccatgacaatggtgccatccccaaccccgccccccaccagaggatgttcatcggcgct
tgttgggagcttgaggagaagcagaaggagatactgaacaacaccatcccagaggggaaa
gactcagtgaagtatgtgggcggttaccacggcctgttgtcgggggtgacggtgcgtcct
ggcagcgtggagcctcacagcgtggtggagtgtctgtacgcctgcagggaggggctggac
ttcggagacctggagactctggggtctggcatgaaggttcatgtgaaccccagtcagtcg
gtgttggtgctggaaggagacgacatcgagagctttaaccgcgccgtgcagcaggtcacc
tacagaaactctctccgcttcgccacccctggagtccgacccctcaaactgagcacctca
ctcagatgtttcaacgaggagagctgcctgtcgctcaaacagctggagggatacctggtg
gttctccagcctgacgccccgcagatctctctgtctggcgtcggccctcatctggctcgt
cctgcccctgagttcgaggccccccgcggtgtcccactgttcccagagctccgcatcgtc
tgctccctgtctcacgctgtcaacacggctgcacaggggatggagggtggaggtcagtca
gtcatgatacctctgatgtccgacgctgtggctcacaccttggacggctgtgaggtgcaa
ccactgggggaggagctcaacccagagagggaggagcttctggtggacatggatgtggtg
cgagagaggggactggaaatcatcaatactacagcttatattgccatcacaggtgccgaa
tccatctctgtgtacgaggacgtccttcgctcggtccgctaccgactggccaaaggctca
gcccgctttgagaggcggttccgcctgtcctgctccgagatgaatggaagatacaccagc
aacgagttgactctggaggtgaacttcctccactctctggacagtctgtaccacccgtcc
cacctgctggcctcccagcagcagtttcttcatccatcccaccatgctggggagttgagt
ggacacacccttcccaatccacaccgcaactcagttgtaccaggagcagctaccgtcatc
ataatggtgtgcgtgggtttcctggttgtcatggtgatcctgggcgttttccgaattcgc
tccatccatcgccgtggtgaaggcgccaagggggctaaggagggtagcagccaatgggac
gactccgccctcaccatcatcgtcaacccgatggagtcctacgagtctcgcatgggaatc
tgcactgagaacgaaggggaggtggaggaagaagaggaggcagcggagtcacctgacgac
gccagcgacgaccagcgaatcatcatcaagaaagaggggagagacggcaccgcccgtcgc
tactga
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