Hippoglossus stenolepis (Pacific halibut): 118113197
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Entry
118113197 CDS
T08308
Symbol
u2af2a
Name
(RefSeq) U2 small nuclear RNA auxiliary factor 2a isoform X1
KO
K12837
splicing factor U2AF 65 kDa subunit
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118113197 (u2af2a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hsp03041
]
118113197 (u2af2a)
Spliceosome [BR:
hsp03041
]
Complex A
U2 snRNP components
U2 related factors
118113197 (u2af2a)
Complex B
118113197 (u2af2a)
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Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_7
Motif
Other DBs
NCBI-GeneID:
118113197
NCBI-ProteinID:
XP_035018565
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All DBs
Position
8:complement(17548221..17557353)
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AA seq
512 aa
AA seq
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MSDFDEFERQLSENKQAERDKENRHHRRSSSRSRSRDRKRRSRDRDRRSRDRRGDSKERR
HRRSRQLTPPPIQKAPARMRVFVSGKEGRDSENMESLQTRSPTSFPQENAGSRSPHREKK
KKVKKYWDVPPPGFEHITPMQYKAMQAAGQIPATALLPTMTPDGLAVTPTPVPVVGSQMT
RQARRLYVGNIPFGITEESMMDFFNAQMRLGGLTQAPGNPVLAVQINQDKNFAFLEFRSV
DETTQAMAFDGIIFQGQSLKIRRPHDYQPLPGMSENPSVYVPGTQTINGVVSTVVPDSAH
KLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDVNLNDQAIAG
LNGMQLGDKKLLVQRASVGSKNATLTSMNQTPVTLQVPGMNSSVTQMGGLPTEVLCLMNM
VAPEELVDDEEYEEIVEDVRDECSKYGQVKSIEIPRPVDGLEVPGTGKIFVEFTSVFDSQ
KAMQGLTGRKFANRVVVTKYCDPDAYHRRDFW
NT seq
1539 nt
NT seq
+upstream
nt +downstream
nt
atgtcggacttcgacgaattcgagaggcagctctccgagaacaaacaagctgaaagggac
aaagagaaccgccaccaccgccggtcctcctcccgcagccgcagcagagacaggaaaagg
aggagcagagacagggacagacgcagcagggaccgccgtggggacagtaaggagcgcagg
cacagacgcagcagacagctcacccccccgcccatccagaaagctcctgcgcgcatgcgt
gtttttgtatctggaaaggagggaagagactcagagaacatggagagtctacagacacgc
tcaccaaccagcttcccccaggaaaatgctggaagccgttctccacaccgtgagaagaag
aagaaggtgaagaagtactgggatgttcctccacctggtttcgaacacatcactcccatg
cagtacaaagccatgcaagctgcaggccagatcccagccacagccctcctgccaaccatg
actccagatggcctggctgttactcccaccccagtacctgtagtgggcagccagatgacc
cggcaggcccgccgactctacgtcggcaacatcccctttggtatcacagaggaatccatg
atggacttcttcaatgcccaaatgcgtttgggtggtctaactcaggcccctggaaaccct
gtccttgcagtacagatcaaccaggataagaattttgccttccttgagtttcgttcagtg
gatgaaacaacacaggccatggcctttgatggaatcatctttcaaggccagagcctcaaa
attcgccgtccccatgattaccaacctctgccgggcatgagcgagaatcccagtgtctat
gtgcctggtacacagacaattaatggtgtggtgtcaacagtggtgcctgactctgctcac
aagctcttcattggtggcttgcccaactacctgaatgatgaccaggtgaaggagctgttg
acgtcatttggtcctctgaaggccttcaacctggtgaaagacagtgccacaggcttatct
aaaggatatgctttctgtgaatatgttgatgtcaacctgaatgaccaggctattgctggg
ctgaatggcatgcagctgggagacaagaagctcctggtgcaaagagcaagtgtgggatcc
aagaatgccactctgacaagtatgaaccagacccccgtgacgctgcaggtgccaggtatg
aacagctcagtaactcagatgggcggcctgcccactgaggtgctctgtctgatgaacatg
gtggcccccgaagagctggttgatgatgaggaatatgaggagatcgtggaggacgtcaga
gacgagtgcagcaagtacggccaagtcaagagcattgagattcctcgacctgtggacggc
ctggaagtgcctgggactggcaagatctttgtggaattcacatccgtctttgactcccag
aaggccatgcaggggttgacaggacggaagtttgccaacagggtggtggtgaccaaatac
tgcgatccagacgcttatcaccgccgagacttctggtag
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