Hippoglossus stenolepis (Pacific halibut): 118113221
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Entry
118113221 CDS
T08308
Symbol
mex3b
Name
(RefSeq) RNA-binding protein MEX3B
KO
K15686
RNA-binding protein MEX3 [EC:
2.3.2.27
]
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsp03019
]
118113221 (mex3b)
04121 Ubiquitin system [BR:
hsp04121
]
118113221 (mex3b)
Enzymes [BR:
hsp01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
118113221 (mex3b)
Messenger RNA biogenesis [BR:
hsp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
118113221 (mex3b)
Ubiquitin system [BR:
hsp04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
118113221 (mex3b)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
KH_1
KH_Vigilin
zf-C3HC4_3
KH-I_KHDC4-BBP
zf-C3HC4
RING_XB3-XBAT31
KH_2
KH_DEAH11_2nd
Prok-RING_4
zf-RING_UBOX
zf-RING_5
Motif
Other DBs
NCBI-GeneID:
118113221
NCBI-ProteinID:
XP_035018621
LinkDB
All DBs
Position
1:complement(30783243..30788350)
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AA seq
541 aa
AA seq
DB search
MPSSLFADNSVQGDALDEQRALQIALDQLSLLGLDNDENPLYDNQEPRKKSVNMTECVPV
PSSEHVAEIVGRQGCKIKALRAKTNTYIKTPVRGEEPVFVVTGRREDVAMARREIISAAE
HFSMIRASRNKNTSVNGSGTPVPGPPNLPGQTTIQVRVPYRVVGLVVGPKGATIKRIQQQ
THTYIVTPSRDKEPVFEVTGMPENVDRAREEIEAHIAMRTGGLIELQDENDFHANGTDVG
FDLHGHATLWSKPNGGMSLASVRKPFSNYRNDSSSSLGSASTDSYFGNNSSRMADYSPPS
PALSYTTTNNNGNNNNNNINVNTNGNGFVYGSEVISPDCTDLTFDSSPGFDPTQAPPGLL
WSQRDSRITPSSTGGSSPTSTSAMFPTNTSTNANGIVASQRRVNGCTPQPRLSPPLHSHT
GGPAEHPLARRVRSDPGGGPLSFPGYSSTIASLPGPHLPGVACDSSASSSSSSSSSSTSS
GTSRKGSRDCSVCFESEVIAALVPCGHNLFCMECANRICERSEPKCPVCHTGVTQAIRIF
S
NT seq
1626 nt
NT seq
+upstream
nt +downstream
nt
atgcccagctcgctcttcgccgacaacagcgtgcagggggatgcgctggacgagcagaga
gccctgcagatcgccctggaccagctctccctgctcggcttggacaacgacgagaacccg
ctgtacgacaaccaggagccccggaagaagagcgtcaacatgacggagtgcgtcccggtg
cccagctccgagcatgtggcagagattgttggcagacaaggttgcaagatcaaagcactg
cgagcaaagaccaacacctacatcaagacccctgttcgaggtgaggagcctgtctttgtg
gtgactggaagaagggaggacgtggctatggccagacgggagatcatctctgctgctgag
cacttctccatgatcagagcctccagaaacaaaaacaccagcgtgaacgggagtggtacc
cctgtccctggaccacctaacctgcccggacagacgaccatccaggtgcgggtgccttac
cgtgtggtggggttggttgttggccccaagggtgccactatcaagcgcatccagcaacag
acccacacctacattgtgacacccagtcgagacaaggagccagtgtttgaggtgacggga
atgccagagaatgtggacagagcacgtgaagagattgaagcccacatcgctatgaggaca
ggaggccttattgagctccaggatgaaaatgacttccatgctaatggcacagatgttggc
tttgatctgcacgggcatgccaccctgtggtccaagccaaatggtgggatgtccctcgct
tcagtgcgtaaacccttctccaactaccgaaacgactcgtcctcttctctgggcagtgcc
tccacagactcctactttggtaataacagttcacgcatggctgactacagccctcccagc
cccgcactcagttacaccaccaccaacaataatgggaacaacaataacaacaacatcaat
gtcaacaccaatggcaacggtttcgtttacggaagtgaggtgatctcgcctgactgcact
gatctgacttttgactcttcaccagggtttgacccaacacaagccccaccaggtctcctg
tggtcccagcgggatagtcgcataaccccctcctcaactggaggcagctcccccacctca
acatcagccatgttccccaccaatacgtccactaatgccaatgggatagtggcgagtcag
agaagggttaatggatgtaccccacagcccagactgtcccctccactccacagccacact
ggaggccccgctgagcacccgttagcccgaagggtgcgcagtgacccgggtggtggtccg
ctcagtttccctggttactccagtaccattgcttccctgccgggccctcacctacctggg
gttgcatgcgactcctccgcctcatcctcttcctcgtcttcatcctcctccacctcttca
ggaacaagccgaaaaggcagccgtgattgttcggtttgctttgagagtgaggtcatcgca
gcgctggtcccctgtgggcacaacctcttctgtatggaatgtgccaatcgaatctgtgag
aggagcgagcccaaatgccctgtctgccacaccggcgtcactcaggctatacgtatattt
tcataa
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