Hippoglossus stenolepis (Pacific halibut): 118113228
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Entry
118113228 CDS
T08308
Symbol
cdh16
Name
(RefSeq) cadherin-17
KO
K06810
cadherin 16, KSP-cadherin
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04519
Cadherin signaling
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04519 Cadherin signaling
118113228 (cdh16)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
hsp04515
]
118113228 (cdh16)
Cell adhesion molecules [BR:
hsp04515
]
Cadherins
Major cadherins
118113228 (cdh16)
BRITE hierarchy
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Ortholog
Paralog
GFIT
Motif
Pfam:
Cadherin
Cadherin_FAT4_N
Ig_CLSTN
Cadherin_CELSR2_9th
Ig_Cad99C_N
Big_9
REC-like_halo
Protocadherin
InlK_D3
Motif
Other DBs
NCBI-GeneID:
118113228
NCBI-ProteinID:
XP_035018633
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All DBs
Position
1:11185510..11212499
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AA seq
823 aa
AA seq
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MAKTGATPMLILALILVILYTLAPCSGANVKIGVPENYDGIFPWYLAKLHSLPSNYSDLV
VTGDDEGIFGVDAQFLYALKPLDREKQPSYSLQVSFRASVHRQSFTVEVCVIDKNDNVPT
FLGESMRGSVQLGLLKGIPFMQVEALDRDDLDTAHADLRFRLMEQTPRIPSSQMFSIGSI
TGEVSLTEEGASTLDPEMCGRYKLSVMVKDMAGKANAFFTTGIVTVEVTGNTWASPDPVR
LQENLPGPYPIPISQVKWSGSQAQYSLDGEFPEMLFTISREGVIYLNAPLDRETQDQFQI
SIVVERPDGREIAKPVELRVMVGDANDNRPTFPQAQYHTVVKELAARGTEILTVQAADND
DPKTDNVRISYRLVGQIPESPRALFRVDRDSGVIFVQADSMEGTAPQYTLTITAEDAKGL
NSSCTVVVTVQDENNNPPVFSRHEYGPFRILEDAPVGTTVTAVLAGDADVRGGDSWQVDY
RLESGNEEEVFTLVTDKQTNEVSLVLSKVLDFERESEYILVLSGQNPVALVRGRYGPAST
ATVAIYVDDVNEGPILSQSHYEVTVREGEEPGRVIATIRGYDPDSHPIRYSLQGDTKKYF
SIGKYSGELKTVQALDREENSTYTMEVIAVDGRNSSLSASTLVTVQILDVNDNSPVLVGD
YSWKYLCTPRWEEQALVLASRDSDGPQHGGRLNFSLRSDATVRRNWKLTPINDTHTNLSL
NIPYLSPEVYTVPFTISDSSSPPRSTFINLPVTVCPCNVRGNCKMAAQRLQGMPTIQSAV
GILLGTFAVIGIILVVVFVRLSYQNPKRPSKTNQERVPLKISI
NT seq
2472 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagacaggagccacaccaatgctgatcctggctctcatactggtgatactttac
actttagcaccatgctctggggcaaatgttaaaatcggtgtcccagaaaactacgatggt
attttcccatggtatctagccaagctccacagcctgcccagtaattacagcgacctggtg
gtaaccggggacgatgaggggatattcggcgtcgacgctcagtttctttatgccctgaaa
ccactggacagagagaaacagccgtcgtactccctgcaggtgtccttcagagcctcagtg
cacagacagagcttcactgtcgaagtgtgtgtcatcgacaagaacgacaacgtgcccact
ttcctaggggagagcatgagaggcagcgtgcagctcggcctcctcaaagggatcccattc
atgcaggtggaggcgctggatcgagacgacctcgacactgctcatgccgacctgcggttc
aggctcatggaacagacgcccagaattccctccagccaaatgttctccatcggctccatc
actggagaggtctccctcactgaggaaggagcctccactctggacccagagatgtgcggc
cgttacaagctctcggtgatggtgaaggacatggccgggaaggccaacgctttcttcacc
accggcatcgttaccgttgaggtgacaggaaacacctgggcatcccctgaccctgtgcga
ctccaggagaacctgccggggccctaccccatccccatctctcaggtcaaatggagtgga
agtcaggcccagtacagtctggacggggagtttccagagatgctcttcaccatcagcagg
gaaggagtcatttatctcaatgctcctctggacagagagactcaagaccagttccagatc
agcatcgtggttgagcgtccggacggcagagagattgccaagcctgtggagctgagggtg
atggtgggcgacgccaacgacaacagacccaccttcccacaagcgcagtaccacactgtg
gtcaaggaactggctgctcgagggacagaaatcctcacagtgcaggcagccgacaacgac
gatcccaagacggacaacgtgcggatctcttaccgtttagtcgggcaaattccagagagt
cctcgtgccctcttcagagtggaccgtgactcgggggtcatcttcgtccaagcagacagc
atggagggcacagcaccacagtacactctcaccatcactgctgaggacgccaaaggttta
aacagctcctgcactgttgttgtgacggtgcaggacgagaacaacaacccgccagtcttc
tcccgacatgagtatgggccctttcgcatcctggaggacgcccctgtgggcaccacagta
acagctgtgctggcaggggacgcagatgtgcgaggaggagacagctggcaggtggactac
cgcttggagtctggaaacgaggaggaggtctttacattagtgacggacaagcagaccaat
gaggtctcgcttgtgctctcgaaggtgttggactttgagcgtgagagcgagtacatcctg
gtgctcagcggtcagaacccagtggctctggtccgcggacgatacggacctgcgtccaca
gccacagtcgctatttatgtcgacgacgtgaatgagggtccgatcctgtcgcagagccat
tacgaggtgaccgtcagagagggcgaggaaccaggacgggtcatcgccaccatccgaggt
tatgaccccgactctcaccccatcagatattctcttcaaggggacacaaagaaatacttt
tcaataggcaaatactctggagaactgaagactgtgcaggccttggacagagaggagaac
agcacgtacaccatggaggtcattgcagtggatggacgaaactcttccttatccgcgtcc
accctggtgacagtgcagatcctggatgtgaatgacaacagcccggtgctggtaggagac
tactcctggaagtacctgtgtactcctcgctgggaggagcaggctctggtgttggcctcg
agggacagtgacggacctcagcacggaggacggctcaacttctctctgcgcagtgatgcc
acagttcggcgcaactggaagctaacgccgataaacgatactcacaccaacctgtcctta
aacatcccgtacctgtcccccgaggtctacaccgtgcccttcaccatttctgacagcagc
tcccctcccaggagcaccttcataaacctgccagtgacagtgtgtccctgcaacgtcaga
gggaactgcaaaatggctgcccagcgattgcagggcatgccaactattcagtcagcagtg
ggaattctgctcggcacctttgcagtcataggaattatccttgttgttgtttttgtgaga
ctgtcctaccagaacccgaagaggccgagcaaaacaaaccaggagagagttcccctgaag
atttcaatctaa
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