Hippoglossus stenolepis (Pacific halibut): 118113597
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Entry
118113597 CDS
T08308
Symbol
cnot3a
Name
(RefSeq) CCR4-NOT transcription complex subunit 3a isoform X1
KO
K12580
CCR4-NOT transcription complex subunit 3
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
118113597 (cnot3a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsp03019
]
118113597 (cnot3a)
Messenger RNA biogenesis [BR:
hsp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
118113597 (cnot3a)
mRNA degradation factors
3'-5' decay
Ccr4-NOT complex
118113597 (cnot3a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Not3
NOT2_3_5_C
DUF5646
Motif
Other DBs
NCBI-GeneID:
118113597
NCBI-ProteinID:
XP_035019350
LinkDB
All DBs
Position
8:17143728..17152122
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AA seq
914 aa
AA seq
DB search
MADKRKLQGEIDRCLKKVAEGVEQFEDIWQKLHNAANANQKEKYEADLKKEIKKLQRLRD
QIKTWVASNEIKDKRQLVENRKLIETQMERFKVVERETKTKAYSKEGLGLAQKVDPAQRE
KEETGMWLTNTIDTLNMQVDQFESEVESLSVQTRKKKGDKDKQERIDELKRLIERHRFHI
RMLETILRMLDNDSVPVDSIQKIKDDVDYYIDSSQDPDFEENEFLYDDLDLDDIPLVATS
PSGQGLEDEMYLHSSSTPTSTTSSSPIPPSPATCTAENSEDDKKRGRSTDSEVSQSPVKN
GTPSLLSSFSSSSTSGSSSSSSLVSMASVVGGITPVPTSNSLIGSFSSAVQQHQHQPAQQ
QQQPQPPNQPPQLQQQQPPQTKPSVPSHNAPSPPSNPLLPASTSPSLLTSSTPSSSAPNS
QPQITPGPSPASSLGLGLGLGLGLGLSKVGITGTNSANQIPGLGLVGHPTPLNTMAGLLS
GSTPAPYAQAAASGGLGLSNITQSSISVESSTSIPTSGSSGVTTNGAGTGLGLLGTSPVH
SCLSGSILGLVPGQNVAPGALQVPPSTVSTTSGVVGMMGGNVGNVGVVGGVGVNAAPARP
PSGLKQNGSTSYSAVVAESATESALSTPSQSQSSQPSSLSSSTSQPMDNGPSLISSITLP
PSSPSPSFSDSTPGGGSLLNGPHSYTQATEGLKAPEPLSSLKAMAERAALGSGLDGEIPN
LHLTDRGRNDIFSSSSAAPGTPAALQPSVSEVSIPPSLGVCPLGPTPLPKDQLYQQAMQE
SAWTHMPHPSDSERIRQYLMRNPCPTLPFHHQIPPHHSDSIEFYQRLSTETLFFIFYYLE
GTKAQYLSAKALKKQSWRFHTKYMMWFQRHEEPKTITDEFEQGTYIYFDYEKWGQRKKEG
FTFEYRYLEDRDLQ
NT seq
2745 nt
NT seq
+upstream
nt +downstream
nt
atggctgacaagagaaaacttcaaggtgagatcgacagatgtttgaaaaaagtagccgaa
ggtgtagaacagtttgaagatatctggcagaagctccataatgcagccaatgcaaaccag
aaggaaaaatatgaggctgacctcaagaaagagattaaaaaactacagcgattgagagat
cagataaaaacatgggtggcctcaaacgaaatcaaagacaaaaggcagctagttgagaac
cgcaaacttatagagacgcaaatggagcggttcaaggtggtggaacgtgaaacaaaaaca
aaagcttactctaaagaaggcttggggctcgctcagaaagtggatccagctcagagggaa
aaggaggaaacgggaatgtggctaacaaatacgatagacactctaaacatgcaggtggat
cagtttgaaagtgaggtggaatctctgtcagttcagacaagaaagaaaaagggggataaa
gacaagcaagaacgtattgatgagctcaagcggttgattgagagacatagattccacatt
cgtatgttggagaccattttacgtatgctggacaatgactctgtgccggtggattcaatc
cagaagatcaaggatgatgttgactactacattgattcgtcccaagacccagactttgag
gagaatgagttcctctatgatgacttagacctggatgacataccattagttgcaacttct
ccgtcaggtcagggcttggaagatgagatgtatcttcattccagcagcactcccacttcc
accacctcttcttcacccatccctccatccccagccacatgcactgctgagaactcagag
gacgataagaaaaggggacggtcgacagacagtgaagttagtcagtcgcctgtgaagaac
ggcaccccatctttgctgtcttccttctcttcctcctccacctctggttcttcgtcatcc
tcctccctggtgtccatggcgagtgttgtcggaggcattactccggtgcccacgagcaac
agtctaataggaagcttcagcagtgcggtgcagcaacatcagcatcaacctgcacaacag
caacaacagcctcagccaccaaaccaaccgccgcaactacagcagcagcagccacctcag
acaaaaccttctgtcccctcacacaacgcccccagcccgcccagcaaccctctactccca
gcctccacctctccctctctccttacgtctagcacacccagttcatcagcccccaactct
cagcctcagatcacaccagggcccagcccggcatccagcttgggactcgggcttggactg
gggcttggactgggattgagcaaagttggtataacggggaccaacagtgccaaccaaata
cctggtttaggcctggttggccaccccactcccctcaacacaatggcagggctcctttcg
ggctccacacctgccccttacgctcaggcagcagcatcgggaggtttgggtttgagcaac
atcactcagtccagcatttcagtggagagcagcacttccatccccacctctggctccagt
ggagtcaccaccaacggggcggggacagggcttggattactaggtaccagcccggttcac
agctgtctgagtgggagtattctgggtctggttcctgggcaaaatgtggccccaggtgcc
ttgcaggtgccgccgagtactgtcagcactacctctggtgtagtcggcatgatgggagga
aatgtgggaaatgtcggtgtggtcggaggagtgggggtgaatgctgctcctgcaagacca
ccgagtggactcaagcaaaatggaagcacaagttacagtgctgtagtagcagagagcgcc
acagaatcagctctgagtacaccgagccaatcacaaagcagccaaccctcgtctctcagt
tcctcaaccagtcagccgatggacaatggtcccagtttaatcagctccatcacgctgcct
cccagctctccgtccccctcgttctcagacagcacaccgggaggtgggagtcttcttaat
gggccccactcctacacacaggccactgagggcctcaaggctcctgagcctctcagttct
ctgaaggcgatggctgagagagcagccctgggttcaggcctggatggagagattcctaac
ctgcacctgacagacagaggtcggaacgacatcttctccagttcgtctgcggcgcctggc
acgcctgctgcccttcagccgtccgtgtcggaagtcagcatccccccgtcactcggagtc
tgtccactcggccccacccctctccccaaagaccagctgtaccagcaggccatgcaggag
tctgcctggacacacatgccacacccctcagactctgagaggatcaggcaatacctgatg
aggaacccgtgtccgaccttgcccttccatcatcagataccaccgcatcactcggactcc
atagagttctaccagaggctctccacagaaaccctctttttcatcttctactacctggag
ggcaccaaggctcagtatctgtcggccaaggccctgaagaagcagtcgtggaggtttcac
accaagtacatgatgtggttccagaggcacgaggagcccaagactatcacagatgagttt
gaacagggcacttacatttactttgactacgaaaaatggggccagaggaagaaggagggg
ttcaccttcgagtataggtacctcgaggacagggacctgcagtga
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