Hippoglossus stenolepis (Pacific halibut): 118113685
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Entry
118113685 CDS
T08308
Symbol
smarcc1a
Name
(RefSeq) SWI/SNF complex subunit SMARCC1 isoform X1
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
118113685 (smarcc1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hsp03021
]
118113685 (smarcc1a)
03036 Chromosome and associated proteins [BR:
hsp03036
]
118113685 (smarcc1a)
Transcription machinery [BR:
hsp03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
118113685 (smarcc1a)
Chromosome and associated proteins [BR:
hsp03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
118113685 (smarcc1a)
PBAF complex
118113685 (smarcc1a)
GBAF(ncBAF) complex
118113685 (smarcc1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_2
SWIRM-assoc_3
SWIRM
SWIRM-assoc_1
Myb_DNA-binding
Myb_DNA-bind_6
HEAT_GCN1
Chromo
BRCT
BRCT_2
Motif
Other DBs
NCBI-GeneID:
118113685
NCBI-ProteinID:
XP_035019509
LinkDB
All DBs
Position
8:24726281..24746427
Genome browser
AA seq
1127 aa
AA seq
DB search
MATATAGGTGSGGPATGLVGGGGAALGRKKDGGPSTKFWESSETISQMETVRQWIGKHYK
KYVQNDSPSSKSLAGLVVQLLQFQEDAFGRRVNNPALTKLPAKCFQDFKAGGSLCHILGS
VYKFKSEQGWRRFDLQNPSRMDRNVEMFLNVEKNLVQNNCLTRPTVFLSPDIEQKQASKL
KDIIKRHQGSITDDKSKATHHIYPSASQQDEEEWLRPVMRKDKQVLVHWGLYPDSYDTWV
SAGEVDGDVEDPPSTDRPWKVHAKWVLETDAFNEWMNEEDYEVDENKKPVSFRQRIFPKE
EESSRTPDRKERKANSAGKKRRRSPSPPSTPVESRKKGGKKGNPGPHWKRRGHRGEEEDT
EEDMTKDLDDSSAGASLEEGSVSKNASSKKDSENTPVKGGNVADLDDMEDDSVLSGGKDD
EDQGKAEINRLIDAGEDNVTEQTHHIIIPSYAAWFDYNCIHEIERRALPEFFNGKNKSKT
PEIYLAYRNFMIDTYRLNPQEYLTSTSCRRNLTGDVCAIMRVHAFLEQWGLVNYQVDSDS
RPLPMGPPPTPHFTVLADTPSGLIPLNHRPPPIPPQQPMPNFIDKGKEKSIDLQNFGLRT
DLYKKSAKYLSLQAKAVTSTRDWTEQETLLLLEALEMFKDDWNKVSEHIGSRTQDECILH
FLRLPIEDPYLESTESTLGPLAYQPIPFSQSGNPVMSTVAFLASVVDPRVASAAAKAALE
EFSRVREEVPAELVEAHVKKVQEAARSTGKVDPAFGLESSGIAGTAPEEPEKTETAEPEK
MDTDSDSQQADKAESKEEAEKPSESAEKSDKTDAADKVKKEGGETSDREEEAEEGGEAKT
SPAEKEKEETMETSPSEQEKEKEEKAAEDEGEEKRKKLEHDIGEGNIATAAAAALASAAT
KAKHLAAVEERKIKSLVALLVETQMKKLEIKLRHFEELETIMDREKEALELQRQQLLTER
QAFHMEQLKYAEMKARQQMEQQAAAAAAAAAAAAQAQGQAPGSGPPQPGMHPGGPPPHHG
GPPPHHGGPPPGAAMHPGYPPMGHHPMATLHPGPPGPMGPNQPIPGRMMPGPPSAGPPSG
GMAPMMPPRHAGAPNGLYPGPAPAQPEPVPAVPVGPPAPPSARVADN
NT seq
3384 nt
NT seq
+upstream
nt +downstream
nt
atggcgacggcaacggcaggcgggacgggctccggcggaccggccaccggcctggtcggc
ggcggcggggcggcgctgggacgcaagaaggacggcggcccgtccacgaagttctgggag
agctcggagacgatctcgcagatggagacggtgcgccagtggatcgggaaacactacaag
aagtatgtccagaacgactccccctccagtaaatccttggcgggcctggtcgtccagctg
ctgcagttccaggaggacgcgtttggacgcagagtcaacaatcctgctcttaccaagcta
cctgcaaaatgtttccaggatttcaaggcaggaggttccctctgtcacatcttggggtct
gtctacaagttcaagagtgagcagggctggcgtcgatttgatctgcagaatccctcccgg
atggacaggaacgtggaaatgttcttgaatgttgagaagaacttggttcagaataactgc
ctgactcgacccactgtcttcctgtcgccggacatcgagcagaaacaggccagtaagctc
aaagacatcatcaagaggcaccagggctcgattactgatgacaagtcgaaggccacccac
cacatttatccctcagcatcccaacaagacgaagaggagtggcttcgacctgtcatgagg
aaagacaagcaggtgctggtgcactggggtctctacccagacagctatgatacctgggta
tcagccggcgaggtggacggtgacgtggaggatcctccgagcactgaccgaccctggaag
gttcacgccaagtgggttttagagaccgacgccttcaacgagtggatgaacgaagaagac
tacgaggtcgacgagaacaagaagccagtcagcttccgccagaggatcttccccaaagag
gaggagtcttcccgtacacccgatcgaaaggagcgcaaagccaactccgccggcaagaag
aggaggcgctcgccctcgccgcccagtactcccgttgagtctcgcaagaagggaggaaag
aaggggaatcccgggcctcactggaagcgacgaggccacagaggcgaagaggaggacacg
gaggaggacatgaccaaggacctagacgactcgtcggctggtgccagcttggaggagggc
agcgtttccaaaaacgcaagttcaaagaaagacagcgaaaacactccggtgaaaggaggg
aatgtggccgacctggatgacatggaggacgactctgtgctgtctggtggaaaggatgac
gaggaccagggcaaagctgaaatcaaccggctgatcgacgctggcgaggacaacgtgact
gaacagactcatcacatcatcatccccagctacgctgcctggttcgactacaactgcatc
catgagattgagagaagagccctccccgagttcttcaacggaaagaacaagtccaaaact
ccagagatatacctggcctatcgtaacttcatgatcgacacgtaccggctgaaccctcag
gagtatctcacctccacctcctgccgcaggaacctgaccggagatgtgtgcgccatcatg
agggtccatgcgttcctggagcagtggggtttggtcaattaccaggtcgactcagatagt
cgccctctgcccatgggccccccacccacaccccacttcactgtgctggctgacacaccc
tccggcctcatacccctgaaccacagacccccaccgattcctcctcaacagccgatgccg
aacttcatcgacaaaggcaaagagaaatccatcgacctgcagaactttggccttcgcacc
gacctctacaagaaaagcgccaagtatctttctctgcaggctaaagccgtcacttccacc
agggactggaccgagcaggagactctcctgctgctggaggctctggagatgttcaaagac
gactggaacaaagtgtcggagcacataggttcccgcacccaggacgagtgtatcctgcac
ttcctgcggctgcccatcgaggatccctacctggagagcacggagtccactctgggccct
ctggcctaccagcccatacccttcagccagtctggaaaccccgtcatgagcactgtcgcc
ttcctggcctctgtggtcgaccccagagtcgcatctgctgcggccaaggcagctctagag
gagttttcccgtgtgcgtgaggaggtgcctgctgagctggtggaggctcatgtgaagaag
gtgcaggaggcggcgaggagcacaggaaaggtggaccccgccttcggcctggagagcagt
ggcatcgctggcacggcccccgaggagccggaaaagaccgaaaccgcagagccagaaaag
atggacacggactcagactcccaacaggctgataaggcggagtcgaaggaggaggcagag
aagcccagtgagtctgcagaaaagagcgacaagacggacgctgcggacaaggtgaagaag
gagggaggagagacgtcggaccgcgaggaggaggcagaggaaggaggagaggccaagacg
tctccagcagaaaaagaaaaggaggagaccatggagacatcgccctcagagcaggagaag
gagaaggaggagaaggcagctgaagatgagggagaggagaagaggaagaagctggagcac
gacatcggagagggaaacatcgccacggcggccgcagctgctctggcatctgctgccacc
aaggccaagcacttggcggcggtggaggagaggaagatcaagtccctggttgctctgctg
gtggagacgcagatgaagaagctggagattaagctgaggcacttcgaggagcttgagacc
atcatggaccgagagaaagaagcgttggagctccagcggcagcagctgctcaccgagcgc
caggcgttccacatggagcagctcaaatacgccgagatgaaggcgaggcagcagatggag
caacaagctgctgctgctgccgccgccgctgctgcagctgcccaggcccagggacaggcc
cccggatctgggccccctcaaccaggcatgcaccccggaggaccccctccacaccacgga
ggacccccaccacaccacggaggaccaccgcccggtgctgccatgcaccctggctacccc
ccaatgggtcaccaccccatggccactctccacccaggaccaccaggaccgatgggacca
aaccagccgatacctggacgtatgatgccggggccgccctccgcaggccccccgtctggc
ggcatggctcccatgatgcccccacgccacgctggagctcccaacggcttgtaccctggc
ccagcacctgcacaacctgaaccggttcctgcagtccctgtgggtcctccagcccccccg
agtgcacgagtggctgacaactaa
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integrated database retrieval system
