Hippoglossus stenolepis (Pacific halibut): 118113961
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Entry
118113961 CDS
T08308
Name
(RefSeq) DENN domain-containing protein 4B-like
KO
K20163
DENN domain-containing protein 4
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hsp04131
]
118113961
Membrane trafficking [BR:
hsp04131
]
Protein recycling
Rab GTPases and associated proteins
Other Rab GTPase associated proteins
118113961
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DENN
uDENN
dDENN
PPR_2
PPR_3
PPR_long
DUF2464
PPR
SPA
Motif
Other DBs
NCBI-GeneID:
118113961
NCBI-ProteinID:
XP_035020000
LinkDB
All DBs
Position
8:26465795..26493627
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AA seq
1512 aa
AA seq
DB search
MTEEKCPQLVDYFVVAGLDPAGPWRPLDEDGKTSSPYSSSSTTSSSPARAVEPVTDLAVI
AKGLGEEVPEGFTCIDRTLGGHSAELSAGLINNPHLYLCYRRGREKPPILDLGVLYEGKD
PLKQGWYVIETTPYSRSANLSSGGAPTAHRVFLMYRRALDSQGLHTLGVTDIALLLPSKG
EVAPHTFSRVDKNLNTGMWGPALYVCYKRAVAKANALVYEATLISRYPEEDLEAFPLPES
VPVFCLPMGVTVESWPLNTKYQLPIFSTFVLTSASGDKVYGAAIQFYESFPRELLSERQS
VRLGLLSVVDRRPITNRSLQAKKSICVLSHWPFFTIFQKFLTFIYRYSISGPHVLPLEKH
ISSFMHNVPFPSPQRPRILVQLSPYDNLLLCQPVSSPLPLSGASYLKLLQNLGPENACTL
LLAVLTEHKLLLHSLRPDVLTSVSEALVSMSFPLRWLCPYIPLCPLQMADVLLAPMPFIV
GVHSSYFDLYDPPTDVVCVDLDTNTIFQSDDKKPLSWRSLPRKHGKTLFNALTSLHKTLE
KICTPGQEEATLEFLLTDYDQIYRRQKQLELEIQEVFLRFMSCLLRGYRSFLLPITQAPS
DTTTDCSSLFNLQGFLKSRDRTQQKIYSQLTRTQMFTQFIEECSFVSDRHACLEFFDECV
QKVDVEKPEEVRLIDMDETYSGEHTVFIMPPEEPQEPDGSECPALYSYETFPTLRPELFD
QPQDQLRVPAKGSAPSSPAPRRTKQEIKLAQKRAQKYSAVPDMWSKCLLGHCYGLWFLYL
PTFVRAESAKVRALHTAYDVLKHMENRKVVVPDEVCYRILMQLCGQYGQPVLAVRVLLEM
KKAGITPNTITYGYYNKAVLESKWPSTSQGGRLRWAKLRNVLLAVAQFRQPIKRRQKSGS
VGSRGEMMVDADQRPRPHSNLIRQSSWSGLSESSSHESLTGPMVKSNSLNSMSASSDKVK
HCKKAVLPDAGTAGCRDAVSRKPPLGLRDASAPPAAPPSGVVVVPRSQVCLSNFYKECAE
SADSEPDCSCHPAERDGRPVGVRDSSGRKEAVDENYNNVSSPNRGGLAGKLQQLLTPTRH
RVSVRRAASVDDRRPGGGIGRRVSEQRQSRKAQVAETLLKAKDRLVNATSESSLSVGSDL
DLTDTPTPAFPIRRSWDANQEAAGLEVLMSSCSLCRSCNSLVYDEEIMAGWTSDDSNLNS
SCPFCGATFVPFLNAEICDLGLISSAERSNWNLEDEVESSARPPSGQDFSLRHQCNGLSE
ESSSETSSYSENSRTTTASSVGGAPQVTVAYLSPLVLRKELESLLENEGEAVLAQPQFLD
SHSIIFWNLVWYFQRLGLPCNLLQLVRASPLVSSFTQSESSAVSVRLLWDTLTPDTDQWP
PLYILWRIHSGVPMRSYSWRRHNHPFTLAFLEEVLRWVGMNEVHKAVTLFLDTMAKQPAS
TRIQRSLYREFLFLTLAAMGKDHVAAFDKKYKAAYSRLSGTLGREELRKKRAQPLSPKAV
DCRRSFHPPLEC
NT seq
4539 nt
NT seq
+upstream
nt +downstream
nt
atgacagaggagaaatgtccgcagctggtggactacttcgtagtggcaggtctcgaccct
gcagggccctggaggcccctggatgaggatgggaagacctcctccccctactcttcctcc
tccaccacctcgtcttctccggcccgggcggtggagccggtcacagacctggcggttatt
gccaaagggctcggggaggaagtgccggagggcttcacctgcatcgacaggacgctgggc
ggacattcggccgagctgagcgctggactgatcaacaacccgcacctgtacctgtgttac
cgccgaggacgagaaaaaccgcccattctggacctgggggttctgtacgaggggaaggat
ccactgaagcagggctggtacgtcatcgagacgacgccctacagccgctcggccaacctg
agctctggcggcgccccgacggctcaccgggtgttcctgatgtatcggcgggctctggac
tcgcaggggctccacacgctgggcgtcaccgacatcgccctgctgctgcccagcaagggg
gaggtggccccgcacactttctcccgcgtcgataagaacctgaacaccggcatgtggggt
ccggccctgtacgtgtgctataagagggctgtggccaaagccaacgcgctggtctacgaa
gccactctgatcagccgctacccggaggaagacctggaagcgtttcctctgccggagtcg
gtgccggtcttctgtttgccgatgggcgtcaccgtggagagctggcctctgaacacaaag
taccagctgcccatcttctccaccttcgtcctcacgtccgcctccggggacaaggtttac
ggagcagccatccagttctacgagtccttccccagggagctgctgtcggagcggcagagc
gtgaggctcggcctgctcagcgtggtcgaccggcggccgatcaccaaccgcagcctgcag
gcgaagaagagcatctgcgtcttatcccactggcccttcttcaccatcttccagaagttc
ctcaccttcatctacagatactccatctccgggccgcacgtcctgcctctcgaaaaacac
atctccagcttcatgcacaacgtcccgttcccgtccccccagcggcctcgtatcctcgtt
cagctctctccgtacgacaacctgctgctctgccagccggtctcatctccgctcccactc
agtggggcgagttacctgaagctgctgcagaacctgggtccagaaaacgcctgcacgctg
ctgctcgccgtcctcaccgaacacaaactgctgctgcactcgctgcgcccggacgtcctc
acctccgtcagcgaggccctcgtctcgatgagtttccctctgcgctggctctgtccctac
atccctctgtgtccactgcagatggccgatgtgctgctggcgccgatgcccttcatcgtg
ggcgtccactccagctacttcgacctgtacgacccccccacggacgtggtgtgtgtcgac
ctggacaccaacaccatcttccagtcagatgataagaagccgctgtcgtggcgctcgtta
cccaggaagcacggaaagactctgttcaacgcgctcaccagcctccacaagaccctggag
aagatttgcacccccggccaggaggaggccacgttggagttcctgctgaccgactacgat
cagatctacaggcgtcagaagcagctggagctggagatccaggaagtgtttctgcgtttc
atgagctgcctgctgcgaggataccgctccttcctgctgccgatcacacaggctccgtcc
gacaccaccaccgactgcagttccctcttcaacctgcagggcttcctgaagtctcgggat
cggacgcagcagaagatttacagccagctgacgaggacgcagatgttcactcagttcatc
gaggagtgctccttcgtcagtgaccgtcacgcctgcctggagttcttcgacgagtgcgtc
caaaaggtggatgtggagaagccggaggaggtgaggctgatcgacatggatgagacttac
agtggagaacacacagtcttcatcatgcctcctgaagaaccacaggaaccggacgggtca
gagtgtcctgccctctacagctatgaaaccttccccacgctgaggccggagctcttcgac
cagccgcaggaccagctccgtgtcccagctaaaggcagcgcccccagcagccccgcccct
cgacgcacaaaacaggagattaaactggctcagaagcgagctcagaaatactcggcggtc
cccgacatgtggtccaagtgtctgctgggtcactgttacggcctctggttcctctacctg
cccaccttcgttcgggcggagagtgccaaggtccgcgccctgcacacggcctacgacgtc
ctcaaacacatggaaaaccgcaaagtggtggtgccggacgaggtgtgttaccgcatcctg
atgcagttgtgtggtcagtacgggcagccggtcctagctgttcgagtcctgctggagatg
aagaaggcgggaatcacacccaacaccatcacctacggatactacaacaaggcagtgctg
gagagcaagtggccgtctaccagccagggcgggcgtctccgctgggccaagctgaggaac
gtcctgctggccgtggcccagttcaggcagccaatcaaacggcggcagaagagcggctcg
gtggggtcacggggagaaatgatggtggacgcagaccagaggccccgcccccactccaat
ctgattcgtcagtccagttggagcggtctgtctgaaagctccagtcacgagtctctaact
ggtccaatggtgaagagcaacagtctgaacagcatgagtgcctcgtccgacaaggtcaaa
cactgtaagaaggccgtcctccctgacgcagggactgccggctgccgtgacgccgtctct
cgaaaacctcccctgggactaagagacgcgtccgccccgcctgcagcgccccctagcggt
gttgtagtggtgccgcggagtcaggtctgcctctccaacttctacaaagagtgcgcagag
tcggccgactcggagccggactgcagctgtcatcctgcggagagagacggcaggcctgta
ggggtgcgtgactcgtccggcaggaaagaggctgtggatgagaactacaacaacgtctct
tccccgaaccgcggaggtctagcaggaaaactccagcagctcctcaccccgaccagacac
cgagtgtcggtgcgacgagccgccagcgtggacgaccggcggcctggaggagggatagga
cgaagagtgtcggagcagaggcagtcaaggaaagctcaggtggctgaaacgctgctgaag
gccaaagacaggctggtgaacgctacgtcagagagttcgttgtctgtaggaagtgacctc
gacttgacggacacgcccactccagcgtttcctatacgcaggtcctgggacgccaatcag
gaggcggcggggctggaggtgttgatgtccagctgctctctgtgtcgcagctgtaactca
ttggtttatgacgaggagatcatggcgggctggacgtctgacgactcgaacctgaactcg
tcgtgtccgttctgcggcgccaccttcgtcccgttcctgaacgccgagatctgcgacctc
gggctgatcagcagtgcggagcgcagcaactggaacctggaggacgaggtggagagctcg
gcgaggccccccagtggtcaggacttctccctgcgccaccagtgtaacggtctgagcgag
gaatcgagctctgagaccagcagctactcggagaacagcagaaccaccacggcttcgtca
gtgggtggggctcctcaggtgacggtggcgtacctgagccctctggttctgaggaaggag
ctggagagtctgctggagaacgagggcgaggcggtgctggctcagcctcagttcctcgac
agtcactccatcatcttctggaacctggtctggtacttccagcgcctcggcctcccctgt
aacctgctgcagctcgtcagagcctcgccgctcgtcagcagcttcacacagtcggagagc
tcggcagtgagtgtgaggctcctgtgggacaccctgacccccgacacagaccagtggccc
cccctctacatcctctggaggatccacagtggcgtcccgatgagaagctacagctggcgg
agacacaaccacccgttcaccctggccttcctggaggaggtgctgcgctgggtcggcatg
aacgaggtgcacaaagccgtcacgctcttcctggacacgatggccaaacagccggcgtca
accagaatacagaggagcttgtacagagagttcctcttcctcacgctggcagctatgggc
aaagatcacgtcgcggcgtttgataagaagtacaaggcggcgtactcgcggctcagcggc
actctgggccgtgaggagctcagaaagaagcgagcacagccgctcagccccaaagccgtt
gactgcagacgcagcttccacccgcctctcgaatgctga
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