Hippoglossus stenolepis (Pacific halibut): 118114276
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Entry
118114276 CDS
T08308
Name
(RefSeq) ribonuclease ZC3H12A
KO
K18668
ribonuclease ZC3H12 [EC:3.1.-.-]
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsp03019
]
118114276
Messenger RNA biogenesis [BR:
hsp03019
]
Eukaryotic type
mRNA degradation factors
Other degradation factors
RNases
118114276
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
RNase_Zc3h12a
UBA_6
Regnase_1_C
zf-CCCH_2
zf-CCCH
zf-CCCH_4
CUE
Motif
Other DBs
NCBI-GeneID:
118114276
NCBI-ProteinID:
XP_035020526
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Position
8:complement(20008539..20015202)
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AA seq
612 aa
AA seq
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MDQVLPSQSSAAGLLEPDSEELQLRVDSFRKLGYSSEEVRSALRKLGLSPDTNSVLGELV
RIRTSTAPCSSDGDERRTGLKDSLLPPSWAIGSRITTQLGHQRKTETELRPIVIDGSNVA
MSHGNKEVFSCRGIQLAVNFFLDRGHSSVTVFVPTWRREQPRPDAPITDQHILMDLERRK
IVVFTPSRRVGGKRVVCYDDRFIVKLAYESEGVIVSNDTYRDLQGERPEWKKCIEERLLM
FSFVNDKFMPPDDPLGRHGPSLDNLLRKKPLPTETKRLLCPYDKKCTYGIKCKFYHPERA
NRSYLSLADELREKAQISSAKEEKHVSLSHRQPETGPAHKAASHPRDPNTELVRDGQSSS
YPSLISENKLSYWEDPMKSLNHLPHSGQSQKDWPGLHSAPNHYYTNVSHEYLDSGLGSFD
SQYSDNLHCHSNSHRLRSQQQSGLAGTRHNSSPSCRCCSHTVPSAAHQQHHGSLDSHCQP
SYPHMFPPGVPHQHSLPSPLHYGGAPQHQHSYWSDPFQGLPQASTSGSLPSSVPSSHSHN
SCCSYEGHEYHSWGQQQPSPAAFDPQRMELRKKLHAIFNPHQVDTVMEMFPHLTNAEKLA
AEILNSTQRGIF
NT seq
1839 nt
NT seq
+upstream
nt +downstream
nt
atggatcaggtacttcccagccagagctcagctgcaggtctactggaaccagacagcgag
gagctccagctccgggtggactccttcaggaaactgggttactcctcagaggaggtccgg
tccgctctgaggaagctggggctcagcccagacaccaactcggtgctcggggagctggtc
aggatcaggaccagcaccgcaccctgcagttctgacggagatgagaggagaaccggacta
aaggactctctgctgcctcccagctgggccattggatccagaatcacgacacaactgggg
caccagaggaaaacagagacagaattgaggcctattgttattgacggcagcaatgttgcc
atgagtcacggcaacaaggaagtgttctcctgccgaggcatccagctggcagtgaatttt
ttcctggatagaggccacagctccgtcactgtgtttgttcccacttggcgaagggagcag
cccagacctgatgcccccatcacagatcaacacatcctgatggatctcgagagacgtaaa
atagtggtcttcacgccgtcaaggcgagttgggggcaagagagtggtctgctatgacgac
cgctttatcgtgaagttggcgtacgagtcggagggagtgatcgtatccaatgacacctac
cgtgacctccaaggagaaaggcctgagtggaagaaatgcatcgaggagaggctgctcatg
ttctcctttgtgaatgacaaattcatgccccctgatgaccctctgggtcgccatggcccc
agtcttgacaacctgctgaggaagaagcctctgccaacagagacgaagagactgctctgt
ccttatgacaaaaagtgcacttatggcatcaagtgcaagttttaccatccagagcgagcc
aaccggtcctacctctctttggctgatgagctgagagagaaagcccagatttcttctgca
aaagaagagaaacatgtctcattatcacacagacaacctgaaacgggacctgctcataaa
gcagcttctcatcctcgagacccgaacacggagcttgtgagagacgggcaaagctcctca
tatccaagtctcatcagtgaaaacaaactgtcgtactgggaggatcctatgaagagttta
aaccatttgccccactcgggccagagtcagaaagattggcctgggctgcactcggcgccc
aatcattactataccaatgtctcccacgagtacctggattcaggcctcggctctttcgac
agccagtactctgataacctgcattgccacagcaactcccacaggctcaggtcccagcag
caaagtggcctcgctggaaccagacacaacagcagcccctcctgcaggtgctgttctcac
actgtgccctcagcagcgcaccagcaacaccacgggagcctggactctcattgtcagccc
agctaccctcacatgttcccaccaggtgtgccacatcaacacagcctccccagcccgctc
cattatggcggtgccccccaacatcagcacagttactggtcagatccctttcaggggctt
ccccaagccagcacatcaggcagtctcccctcttccgtcccatcgtcacactcacacaac
tcttgctgctcctacgaaggccacgagtatcactcctggggccaacagcagccatctcct
gccgcgttcgaccctcagaggatggagctccgcaagaaactgcacgccatcttcaaccca
catcaggtggatacggtcatggaaatgttcccacatctgacgaatgcagagaaactggct
gcagagattctcaactcgactcagagaggaatattctga
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