Hippoglossus stenolepis (Pacific halibut): 118114330
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Entry
118114330 CDS
T08308
Symbol
rad54b
Name
(RefSeq) DNA repair and recombination protein RAD54B isoform X1
KO
K10877
DNA repair and recombination protein RAD54B [EC:5.6.2.-]
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
118114330 (rad54b)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
hsp03400
]
118114330 (rad54b)
DNA repair and recombination proteins [BR:
hsp03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
118114330 (rad54b)
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
HDA2-3
SWI2_SNF2
SMN_YG-box
Motif
Other DBs
NCBI-GeneID:
118114330
NCBI-ProteinID:
XP_035020615
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All DBs
Position
8:15211132..15223413
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AA seq
933 aa
AA seq
DB search
MRRSAAPSQLFGNAGKKPRFMPPGASTSGPVTQSKPLAPKLGLGNALEKVQRSLSAPAPS
KTRCDVQPKAAPAAPALSRALALVLSATESKENDDNTEYPDTGSTDYAEDKRTAGVSGSP
PLSPGSPQTPQPPAGSDSACSHDGARYFSVMWCKASKKKHKRWEGDAVLVTRGRSVTLKD
MEGKDIGKGTGYKVSELAALSDGETLMVGGKEVEVMGIISAESFSKGRCFQEVQIESEEP
QTTSAPPPPRRFASKPFCPPTLAGRAEHPGTKPEQTSRPRHDAQAPGALVMPRPSPNHQW
SNNKSGLPVVDVVLDPHLTAHLRPHQRDGLLFLYECVMGMRAVGRNGAILADEMGLGKTL
QSVALSWTLLKQGPYGGKPVTKRVLVVTPGSLVQNWGAEFNKWLGRERISVFTVDQDHRI
EQFVLSPLHSVLVISYEMLLRCQEQVQKVEFGLVICDEGHRLKNSTIKTSSALSSLSCSR
RVILTGTPVQNDLQEFYALIEFVNPGILGSSMGYRKVYEEPILHSRQPSCTEEERVLGEE
RAAELSRLTGTFILRRTQEIINRYLPPRLDWTLFCDPSPLQLELYRHLLCHRVFRACLQG
STQTHTHLACITALKKLCNHPSLLYSTVKKRADHGSEESSVYDGLVDLFPESYSSGGLNT
TDSGKLLVLSDLLTAIRQLSTSDRVVVVSNYTQTLDLLQDFCVHMGYTFCRLDGHTPTNK
RQRLVDSFNSSYSQSFVFLLSSKAGGVGLNLIGASHLVLYDIDWNPANDIQAMARVWRDG
QKKTVHIYRLLTAGTIEERIFQRQVSKQGLSGTVVDLGKGAEHTSFSSNELRDLFSLTDT
PSLTHDLLNCSCSMDGSVQAAVEEEDPVYDRRCQLGRLADRGGVAAPKHLSMSELMQWRH
FSGDTHTFADPYLDHARKHITFAFQTTISHTVQ
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atgaggcgctcggcagcacccagccagctctttggtaatgcagggaaaaagcctcgattt
atgcctcctggggcctctacctcaggtcctgtcactcaatccaagcccctggcccctaaa
cttggattaggcaatgcactggaaaaggtccagagaagtctatcagcaccagctccgagt
aagacaaggtgtgacgtccagcccaaagctgcaccggctgctccggccttgtccagggct
ctggctctcgttctcagtgcgacggaaagtaaggaaaatgacgacaacacggaatatcct
gacactggcagcacagactatgcagaagacaagagaacagcaggggtgagtggttctcct
ccgttgagtcctggctctcctcagaccccacagccccctgcagggtcagactctgcctgc
agtcatgatggagcgcgttacttcagtgtgatgtggtgtaaggccagtaagaagaaacat
aagcgctgggagggtgatgcagtcctggtgacgagaggacgctcagtcactcttaaagac
atggaaggaaaagacatcggtaaaggtactggctacaaggtgtcagagttggccgctctt
tctgatggagagaccctgatggttggtgggaaggaggtggaggtgatggggatcatttct
gcagagtccttttccaagggacgctgtttccaagaggtccaaatagagagtgaggagcca
caaacaacgtcggctccaccccctcctcgtcgctttgcatccaaacctttctgccctcca
accctggcaggaagagccgagcatccaggaactaaaccagagcaaacatcgagacctcgc
catgacgcccaagctccaggtgcactggtgatgcctcgtccctcccccaaccaccagtgg
tctaataacaagtcaggacttcctgtagtggatgttgtgcttgacccacacctgaccgct
cacctgagacctcaccagagagacggcctgctcttcctctatgagtgtgtcatgggcatg
agagctgtgggtcgcaacggtgccatcctggccgatgagatgggactggggaagaccctg
cagagcgtggcactgtcctggacactgctgaagcaggggccgtatggtgggaagccagtt
actaagcgtgtccttgtggttacacctggcagccttgtgcagaactggggtgcggagttt
aacaagtggctgggccgcgagaggatcagtgttttcacagtggatcaggatcacaggatc
gagcagtttgtgttgtctcctctgcacagcgttctggtgatcagctatgagatgctgctg
cgctgccaagagcaggtacaaaaagtggagtttggtcttgtcatttgcgatgagggtcac
agattaaagaacagcaccatcaaaacgtcctctgctctcagtagcctcagctgtagccgc
agggtcatactaacaggcactccagtacagaacgacctgcaggagttttatgctcttata
gagtttgtaaacccagggattctcgggtcatcgatgggttacaggaaagtgtatgaggag
ccaattcttcactccagacaaccctcctgcacggaggaggagcgagttttgggtgaagag
cgagcagctgagctgtctcgcctgaccggcacgttcatcctgagacggacgcaggagatc
atcaataggtacctgcccccccgcctcgactggacgctgttctgtgacccatcccctctg
cagctagagctttacaggcatctcctgtgccatcgagtcttcagagcctgtcttcagggc
tccacgcaaactcacacacacctggcctgcatcactgcactgaagaagctgtgtaaccac
cccagcctgctctactccaccgtcaagaagagagctgaccacggatcagaggagagttca
gtatatgacggattggtagatctcttcccagaatcctactcgtcaggaggattgaacacg
accgattcaggaaaactcctcgttctgtcggacctgttgactgccatcagacagctcagc
acttcagacagggtggtcgtagtgtccaactacactcaaacacttgacttgctccaggac
ttttgtgtgcacatgggctacaccttctgccgactagacggacacacacctaccaacaag
aggcagcgactggtcgacagtttcaacagctcctattctcagagctttgtgtttctgctg
agctccaaagcaggaggtgtgggacttaatctgatcggtgcttcccatctggtgctctat
gatattgactggaaccctgccaacgatattcaggccatggctcgagtttggcgagatgga
cagaagaagactgtgcacatctatcgtctcctcactgcaggaactattgaggagcgtata
ttccagagacaggtctccaagcaggggctttctgggactgtggtcgacctgggtaaaggc
gctgaacacaccagcttctccagcaatgaactgcgagatcttttcagcctgacggacacg
ccgtccctaactcacgacctgctgaactgcagctgcagcatggacggatcagtccaggca
gccgtagaggaagaggacccggtctatgacaggcgctgccagctcggtcgtctagctgac
cgtggaggggtggcggcgccgaagcatctcagcatgtccgagctgatgcagtggagacac
ttctctggtgacacgcacaccttcgcagacccctacctcgaccatgcacgaaaacacatc
acattcgccttccagaccaccatctcccacacagtccagtga
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