Hippoglossus stenolepis (Pacific halibut): 118114466
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Entry
118114466 CDS
T08308
Symbol
cspg4ba
Name
(RefSeq) chondroitin sulfate proteoglycan 4 isoform X1
KO
K08115
chondroitin sulfate proteoglycan 4
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
00535 Proteoglycans [BR:
hsp00535
]
118114466 (cspg4ba)
04091 Lectins [BR:
hsp04091
]
118114466 (cspg4ba)
Proteoglycans [BR:
hsp00535
]
Cell surface proteoglycans
Others
118114466 (cspg4ba)
Lectins [BR:
hsp04091
]
C-Type lectins
Others
118114466 (cspg4ba)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cadherin_3
Laminin_G_2
Laminin_G_1
Cadherin_4
TMEM154
DUF7522
DUF3377
Motif
Other DBs
NCBI-GeneID:
118114466
NCBI-ProteinID:
XP_035020781
LinkDB
All DBs
Position
9:complement(22549553..22575340)
Genome browser
AA seq
2402 aa
AA seq
DB search
MDSHTGRKLCVCGLLWWSLLVELASGASFYGDGFVQLKAAESSDHNALRVRFRTSSTNGL
LFLAAGQTNYFLLELHAGRLQLKLDLGSGEQVLQSDRGTQLNDLAWHSVEVHHVQSNITL
TVDKNSHTGAKMPGSPHNLNIFDGLYVGGSGSLDRLYLPRDPIGFRGCMEDAVFNEHDLL
SSLRPYTGFKTVHEVSLGCSPQFFATEEDPISFFSSRAYISLPTWNAQQEAGVFECVVHT
SATEGIILYSSAREGSFVAVEIQEGLPVAIVGKAGAKTELRSLTFINDRKWHSIKLHLGS
KSLELSVDGEMVKSTIGSRSRGPQLKGFLFVGGIDDSTRSEVRKVGLVSVSGKRVRGGSF
KGCLKNIEVNGVKTGLSSAVVTKDISVGCEPEKEPEPSTTVSPTSTPGSLLHLVTPTPSF
HMSTLARGLDRRYGSNFVQIKNLVVQEGSRASLDAKHIKLLLDFKKLGIRQSQINFRIQE
QPIRGQIRLDVDQDQEENTFSMLDLWHGRVMYIHGGSEEPDDFFMFSIYSSSRKQVPGYL
KGNKLYRYNITVTPTNDAPELSLPEGNLFVLLENSKKRLTTDVLKATDIDSSNDNLVFSV
LGNLNADAGYLEVENNPGQSVTSFSYLDLEELRVYYVHAGVRNSRIVLRVGDGEKVSNTV
VLRVMAVALEYKIANNTGLEIIQGETAIIGSKHLAVQTNAVRQIVDVRYDIIEPPQYGEL
QRLHSSGEWRPTDTFSQRLLEKERLRYVSTFQDIQTSNATDYFKCKVNVAAKAATEILFP
ITVKWVKYHLTRNIMIDLDKVRKVTLDSEHIFATAEGVALSEDDLYFRVLTTPKKGKLLL
DATVLMKNSTFSQRNVTDLKVHYELVDRPYEDTHDRFKFQLVSKHAQSQNYDFQFSIKAD
VNSVFIRNDGLLLLEGESKLITKDDLFAETLSTKDLHYTVISSPRHGKLSRISQSNSNAS
YNNILTFSNQDILEERIMYIHDDSETTQDEFSFIASISQGFKSSIAEDEFGSKDGTFNIT
INLVNDQKPVRVIDKVFHVVRDGQRLLTSEDLRYHDADSDYDDGQLIYTRRGIPLGDLVL
VNDTTHRLFQFRQKDLEEKRVLFIHKGVSTGRFVLFVSDGKHFVSSLLDISAHDPFLKVG
INTGLLVQKGRAVTFSSSNFSVISNLDIRDDQEVIFKLDEAPKYGRLYLKETNVESFTQS
DLKDGLISYRHNDSKHLADYFNVTVKAKSFRLAAKINVKVYLESHQRPPIVLHHNTLLVE
EGKPVKVDETKLEVTHEDNMPSEIVFTVKVAPSHGFLRRFVEAENRYIGTKHSPVKTFNQ
EDINSGNIQYTQVEPNEVNDTFLLDATNGVTDVSGIRMSVDIIPRLIPLQVSNFTLNEGA
SKALTQDVLKVTNRHFSGINFLYSLSEPPQHGHVEHSRHPGVSITSFTRRQVEHEFIYYV
HDSSESLADNLTVVANDSGLRKQSAAQTVYIQVTAVNDEPPVITANRVLRVWVSSVTEIR
PEDLMVQDQDTPPEELHFMVTPPSNGHLALKSAPMKAVLNFTQAHIDQGQLLFVHKGAMS
GGFNFQVNDGVNFTPRQIFSITARALVLSLERNRLLKVFPGSSALITNEALQAVTNDISN
TSTRIITFNVVRHPKLGRLVTRQPDNSTVDIATFTQDMVDRKEVVYIQTPIESVGWEALD
TMTFSVASPPASLDSQTFKMDISYENTGPEHNTVLLANTGAEVTEGDSVIIDESNLDATN
LMSKLPTPRRSSYEVWFQVTSLPQHGVIVVGERTLTKEKPNFSQFIINKYGITYKHDNSE
TTRDSFVFSAWLNLKGKTAQRPQDDDDVVEESFNFTITPVNDQPPLLKTKAPSLVVVQGD
TVALGPENLKVEDLDNPPDDIKFSVISKPNNGYLALERSLNESIMAFSQAQINNKSIYFV
HDGSSVSGVFYFSVTDGHHKPIYKLFNLEVREITISLVNYTGLTLEQGKTSVSLTQDNLA
AVTNGKNVTIHYQITRPPKFGKLLKDNQEVTQFEQEDLVASSLSYHMISVSSAEDSFEFT
AFTSEANLTGVLNITVRPLVQVGKGLRIPTGVLVKLVSSFLNASELANISNSDPVFEIIS
HPRNGKVVRTKPKMSGKAEQAESFTFQEVMQEKIALELNANMTGVQELNDSLVFLLKADN
IQPAKGEFHFAVVPYDPALFPTTKTPVPTTSSVPQTPRQTSINGTASPVLSTALLSTQQP
SKNQQKFKGRNRWGNSNRTGIYSTTLGKPTRGSEDFPFRNTPVRVESYPQKTSSPLLVIL
PLLALLLLVIIFVVLVIFLRHHRQRKQNNAAQKESTGLPSSESYQGQTQRSTTVPMVTVT
QLNPNCPGSPVLDRLLQSNHGSGYNTMDSNIFVSSWSNGSPAASSQIIRAATPTLQKNQY
WV
NT seq
7209 nt
NT seq
+upstream
nt +downstream
nt
atggactcacacaccgggaggaagttgtgtgtctgcgggctgctctggtggtcgctcctg
gtcgagttggcgtcaggagcttccttctatggcgacggctttgtacagctcaaggcagca
gagtcgtccgaccataacgcgctgcgcgtccgcttccgaacctccagcaccaacggcctg
ctgtttctcgctgccggccagaccaactacttcctactggagctccacgctggtcgcctg
cagctgaaactggaccttggatctggggagcaagtgttacagtcagaccgggggacccag
ctcaacgacctggcctggcactctgtggaggtccaccatgtccagtctaacatcactctg
acggtcgacaagaactctcacaccggtgcaaagatgccgggctcccctcataatctcaac
atcttcgatggtctctatgttggaggctcgggaagcctggacagactctatctccccaga
gacccgataggcttccgaggatgcatggaggatgctgtcttcaacgaacatgacctgctc
tcatcactgaggccatatactggattcaagactgtccatgaggtgtctttgggctgtagt
ccccaattctttgccacagaggaggaccctatcagtttcttcagctccagagcttacatt
tctctaccaacctggaatgcccaacaggaagcgggtgtgttcgagtgtgtcgtgcacact
tcagccacagagggaattatattgtacagttcagccagagaggggtcttttgtcgctgtg
gagatccaggaaggtttgccagtggccattgttgggaaagctggagctaaaacggagctt
cgttcgctcacgttcatcaatgacaggaaatggcattctatcaagttgcatctcgggtcc
aaaagcctggagctatctgttgatggagagatggtgaaaagcaccatcggctctcgttca
aggggacctcagctcaaaggttttctttttgttggaggtatcgacgacagcaccagatca
gaagtcagaaaggtggggctcgtctctgtgtctggaaagagagtgagaggaggttcattc
aaaggatgtttgaagaacattgaagtcaacggagtgaagacgggtctctctagtgctgtg
gtcaccaaggatatctcagttggttgcgagccggagaaagaaccagaaccatcaaccaca
gtgagtccaacaagcactccaggatccctccttcacctggtgacaccaacaccatcattt
cacatgtccactcttgcaaggggcttggacagaaggtatggctcaaattttgtgcagatt
aaaaaccttgtggtgcaagaaggcagcagggcatctcttgatgccaaacacatcaagctt
ctcttggacttcaagaagctcggcattcgacaatcccagattaatttccgaattcaggag
caacctattcggggtcagataaggcttgatgtcgatcaggaccaagaggagaacaccttc
agcatgttggacctttggcatggacgagtgatgtatatccatggaggctcagaggaacca
gatgacttcttcatgttttctatttattctagcagtagaaagcaagttcctggttatctg
aagggaaataaattgtaccggtacaatattactgtgacacccactaatgatgcacctgaa
ttgagcctccctgaaggaaatctctttgtcctgttggagaactctaagaaacgcctcacc
acagatgttctgaaggccacagacattgacagcagcaacgacaaccttgtcttctctgta
cttgggaacctgaacgccgatgctggctatttagaagttgaaaacaaccctggccaatca
gtgacctcattctcatatctagacctggaggaactgagggtgtactacgttcacgcgggg
gttagaaactcaaggatagttctccgagttggcgatggggaaaaggtcagcaacactgtg
gttctaagggtcatggctgtagcgctggagtacaaaattgccaacaacaccggtcttgag
attattcaaggagagacggctataattggttcaaagcacctggctgtgcaaaccaatgct
gtcagacaaattgttgacgttcgttatgatatcatcgaaccccctcagtatggagaactc
cagaggcttcactccagcggtgaatggaggcctactgacactttctcccaaaggctcctg
gaaaaagagcgactgaggtatgttagcacttttcaagacatccagacatccaatgccacc
gattacttcaagtgcaaagtcaatgtggccgccaaggcagccactgaaatactcttccca
ataactgtgaagtgggtgaagtaccacctgacgaggaacattatgatagacttggataaa
gtgaggaaagtgacgctggactctgagcatatttttgccacagctgaaggtgtggccctc
tcggaggatgacctttatttccgagttctcacgacgcccaagaaagggaaactcctgctc
gacgccacagtcttgatgaagaactcaactttcagccaaagaaatgtgacggatctaaaa
gtacattacgagctcgttgacaggccttatgaagatacacacgacaggttcaaatttcag
ctggtttccaagcatgctcagtctcagaactacgatttccagttttccattaaagctgat
gtcaacagtgtgtttataagaaatgatggactcttgcttctggagggagaaagtaaactc
atcacgaaagacgatctgtttgcggagactttgagtacaaaggatttgcactacactgtc
ataagcagccccagacatggaaaactgtcccgtattagtcagtcgaattccaacgctagc
tacaacaacatcttaacctttagtaatcaggatatattagaggaacggatcatgtatatt
cacgatgacagtgaaacaactcaagatgagttcagtttcattgcctccatcagccaaggc
ttcaaatcctccatcgccgaggatgaatttggctccaaagacggaacgttcaacatcacc
attaatctagtcaacgaccaaaagccagtgcgtgttatcgataaagttttccatgtagta
agagacggacaaaggttactcacttcggaggatttgcgttatcatgacgcagactctgat
tacgatgacggtcagttgatttacacgcgtcgtggaatcccgttgggagacttggttctg
gttaatgacacgactcatcgactgttccagtttcgacagaaggatctggaggaaaagcga
gtgctgttcattcacaaaggtgtgagcacgggcaggtttgtcctctttgtctccgatgga
aaacatttcgtatcaagtcttttagacatcagtgcacatgaccccttcctgaaggttggc
atcaacactggcttactggttcagaagggccgagcagtaacgttttcctccagcaatttt
agtgtcatatcaaatcttgacatcagagacgaccaagaggtcattttcaagttggatgag
gctcccaagtacggacgactttatctcaaagaaacaaacgtggagtcgttcacccagtcg
gacttaaaggatgggctgatttcctaccggcacaatgacagcaaacatctggccgactac
ttcaacgtaacagtgaaagctaaaagttttcgacttgcagcgaagatcaatgtgaaggtt
tatctggaaagtcaccagaggccccccatagtgttgcatcacaacactttactggtagag
gagggaaaaccagtgaaggtcgacgaaactaaactcgaggtcactcacgaggacaacatg
ccatctgagattgtattcacagtcaaggtagccccctcccacggctttctcaggcgtttc
gtcgaagcggagaatcgctacatcggaaccaaacattcccctgtcaagacatttaaccag
gaggacattaacagtgggaacatccagtacacgcaggtggagcccaacgaagtcaatgac
accttcctccttgacgccaccaacggggtcactgacgtcagcggcattaggatgtctgtt
gacatcatcccacgcctcatcccacttcaggtctcaaatttcacgctgaacgagggcgcc
tccaaggcgctgacccaggatgtgctcaaagtcaccaaccgacacttttctgggattaac
ttcctgtacagtttgtccgagccgccgcagcacggtcacgttgagcactctcgacatccg
ggtgtgtccataacctctttcaccaggaggcaggtggaacatgaattcatttactacgtg
catgacagcagcgaaagcttagccgacaacttgactgtggtggccaatgactcagggctg
aggaagcagagtgcggcccagacggtgtacatccaggttacagctgtcaacgatgagcct
cctgttattactgccaacagggtcctcagggtctgggtgtcttcggtgacagagatcagg
ccagaagatctgatggtgcaggaccaggacacgcccccggaggagctccacttcatggtg
acgccgcccagcaacgggcacctggcgctgaagagcgcccccatgaaggcagtgctcaac
ttcacgcaggctcacatagaccagggacagctgctgtttgtgcacaaaggtgccatgtct
ggaggattcaacttccaagtcaacgatggtgtgaacttcacccccaggcagatcttcagc
atcacggccagagccttagttctcagtttagagagaaaccgtctactgaaggtgtttcca
ggctcctctgcactaatcacaaatgaggctttacaagcggtgaccaatgacatcagcaac
acctccactcgcatcattacgttcaatgtggttcggcatccgaaactggggcgactggtg
acgaggcagccggataattcaacggtcgacatcgccactttcacacaagatatggttgac
aggaaagaggttgtgtacattcaaacccccatcgagtcggtgggctgggaagctctggac
accatgaccttctctgtggcatcaccgcctgcttctctcgacagccagaccttcaaaatg
gacatttcctatgagaatactggacctgaacacaacacagtccttcttgcaaacacaggt
gctgaggtaacagaaggagacagcgtcatcattgatgagtctaatcttgatgccactaac
ctgatgtccaagctgccgacgcctcggcgcagctcctacgaggtttggttccaagtaaca
tctctgccccagcatggtgtcatcgttgtgggcgagagaaccctcaccaaggagaaaccc
aacttctctcagttcatcattaacaaatatggtatcacctacaagcacgacaactctgag
acgactcgtgattctttcgtcttcagcgcatggctaaatctgaagggcaaaacggcgcaa
cgccctcaagatgacgacgatgttgttgaggagagttttaacttcactatcacacctgtg
aatgatcaaccccctctgctaaaaaccaaagctccaagtctggtggtggtacaaggagac
actgtagccctcgggccggagaatctcaaagtggaagacttggacaatcctcccgatgat
atcaagttttctgtgattagcaaaccaaacaacggttacctggctcttgaaagaagtttg
aatgagtcgataatggccttctcccaagctcagatcaataacaaaagcatctatttcgtc
catgatggaagctccgtctcgggggtgttctacttcagtgtcacagatgggcatcataaa
ccaatatataaactctttaacctagaagtgagagaaatcaccatttctctggtcaactac
actggactgacactggagcaaggcaagacctcagtgtcactgacccaggacaaccttgct
gctgttaccaacgggaaaaacgtcaccattcactatcagattaccaggcctccaaagttt
ggcaaacttctgaaggacaaccaagaggttacacagtttgaacaggaggatctagtggct
agcagtttgtcctaccatatgatctctgtctcctccgcagaagacagcttcgaattcacc
gcctttacttctgaggcaaatctgactggagtgttgaacataactgtcaggcctttggtc
caggttggcaaaggtttgaggattcccactggagtcctggtcaaacttgtctctagtttc
cttaacgcctcagaactggctaatatcagcaatagtgaccctgtctttgaaattatatcc
catcctagaaatgggaaagtggttcggacaaaacctaaaatgtccgggaaagctgaacaa
gctgagtccttcaccttccaggaggtgatgcaggagaagatagccttagagctgaatgcc
aacatgactggagttcaggagctcaatgactcactggtgtttttgctgaaagctgataac
attcaacctgctaaaggggagttccactttgcagttgtgccctatgatccagcacttttc
cccaccacaaaaactcctgtcccaaccacatcatctgttcctcagacaccaaggcagact
tcaataaacggaactgcttcaccagtcctgtctacagctctgctctccacccagcaacca
agcaaaaaccagcaaaagttcaagggacgcaaccgctgggggaactccaacagaactggc
atttacagtacgactcttggcaaacccacacgaggatcagaggatttccccttcaggaac
actccagttcgtgtagaatcctaccctcaaaaaacctccagtccactgctggtgatctta
ccactgctggccctgctgctgctcgtcatcatcttcgtggtccttgttatctttctgcgg
catcacagacaaaggaagcagaacaatgctgcacagaaagagtccaccggtcttcccagc
agtgagtcctaccaaggccaaacccagaggagcacgacggttcccatggtgactgtcact
cagttaaaccccaactgcccaggcagcccagttctcgatcggttattgcagtcaaaccac
ggctcgggttataacaccatggattcaaacatattcgtaagttcttggagtaatggttcc
cctgcagcgtcttcccaaattatcagagctgccactccgactcttcagaagaatcagtac
tgggtatga
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integrated database retrieval system
