Hippoglossus stenolepis (Pacific halibut): 118114528
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Entry
118114528 CDS
T08308
Name
(RefSeq) dmX-like protein 1 isoform X1
KO
K24155
rabconnectin-3a
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04142
Lysosome
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09140 Cellular Processes
09141 Transport and catabolism
04142 Lysosome
118114528
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hsp04131
]
118114528
Membrane trafficking [BR:
hsp04131
]
Exocytosis
Small GTPases and associated proteins
Rab associated proteins
118114528
Endosome - Lysosome transport
Acidification regulators
Rabconnectin-3 complex
118114528
RAVE complex
118114528
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rav1p_C
Beta-prop_THOC3
Beta-prop_WDR3_1st
WD40_Prp19
WD40
Beta-prop_WDR5
WD40_WDHD1_1st
WD40_CDC20-Fz
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_WDR36-Utp21_1st
Beta-prop_IFT140_1st
WDR55
Beta-prop_WDR3_2nd
Beta-prop_WDR36-Utp21_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_HPS5
WD40_Gbeta
EIF3I
Beta-prop_EML
Beta-prop_DCAF4
NBCH_WD40
Beta-prop_CAF1B_HIR1
Beta-prop_IP5PC_F
Beta-prop_VPS8
Motif
Other DBs
NCBI-GeneID:
118114528
NCBI-ProteinID:
XP_035020874
LinkDB
All DBs
Position
9:20890244..20938069
Genome browser
AA seq
3090 aa
AA seq
DB search
MNLHQVLTGAVNPGDNCFSVGSVNNVPFTAYASGCDVVILGSDFERLQIIPGAKHGNIQV
GCVDCSLQGGQIAASYGSIVCVFEPVQHPDQKDPPLTKLNCQWQKTGQFVLHSMVRNLAW
HPTGSTLLTGSTSLQLWSHVDSVKDEAEERGKPEEMTMRDSHCSWRCIWQSKTASPVSLM
RFSPDGEFFATAGQDDCLVKVWYSTSKWKSGVSRLFTPAHPSVSVQGELAFSFVYLAHPR
SVTGFSWRKTSTCMPRGAVCNVLLTCCKDSVCRLWAETLLPGDSLLYGPHQNHGSGQLSD
TLRCAGPTRKHACNGKTQGNTAQELSFQESWHLSSYQDVPQPSLTGCLSNHQSCHYNHKR
INSNMPHANALCHFHIAASINPATDIPLLPSISSLSSADDEEPGGPFTVHWLNNKELHFT
LAMEVFLQQLRGSLEQQNGCSHEEPEDEDNSDDEDNGSRPTDPHGPEGGELPLAAVEHQV
DVLLEEWNKGADMLFSIHPMDGSLLVWNVDWLDEYQPGMFRQAQVSFVSRIPVAFPAGDA
ISLSHSVVMYACNKNVDLAIQHGRQRPSGSTLPQAKSALISYRDQGKTLPSSSLRLNIFT
PNVLMISKHADGSLNQWAVSFAEDSAFSTVLSVSHKSRYCGHRFHLNDLACHSLLPLLLT
TSHHNALRTPEVDSILAPPEVVSTSLPRGSRASRLSLGVVSQDPNAIYSELILWRVDPVG
PLSLSGGVSELARINSLHASAFANVAWLPTLIPSSCLGVYCNSPSACFVASDGHSLRLYQ
AVIEAKKLLGELSNPEISKNVGEVFNMISQQSTAKPGCIIELDAITDFQGKETQLLHVFE
EDLILGSERTESTQGNPDSPRTASGEPTFSARFFLVVVELTPTGRSLLHMWHLHLAARPI
TMEETKTEKDATTASPMNSSQFDFDTFSSPVTQKSKTCTSSLQSACRLILTTHRLYSQEM
ALPEGVEAISVTPSAGHLSASCSLPAGRVPYLLATSCSDGKVRFWRCNVVATGPSSMDTL
LYQWEEWPLLLEDRFPNSSTVSVPGRPIEVSCCHTGRIAVAYRQTPNTSLNSTLHLNSNG
LLTSPPTLASSPYSTHLTPTLTVQRSSNPTPSPNIVNIREPLVHISIFQCESTGGSQWIL
EQTIVVDSADPTPNCGTTKMDFSLPNENCLGSTSKSLVHLDWVSQEDGSHVLTVGIGTKI
YMYGRLAGKPPELGLSSEASREQSLSRLVLLRSVDLVSSVEGSLPIPVSLSWVRDGILVV
GMDCEMHVYSQWQLPTPPRPSAVINQDTDISSSVSSIISAVRQSQEEGLSPGAPVSSLAP
PKKALTRSMMSLAQKLSGKRTAYDLPVEMEDSGLFEAAHQLFPTLPQYHPVQLLELMDLG
KVHRAKAILSHLVKCIAGEIVPLKDSTGNPERRVRSRTIGAGGSTARDPKMFNITENSAP
DYTEISSIPPLPLYALLAADEDTSRKTDTVGSVSGDSGHGSSHTDAYDELFHTPSIVDLD
PLDNDEEETGNKVIDLSQYSPTYFGPEHAQVLSSHLLHSSLPGLTCMEQMSLMALADTIA
STSTDLKGSQGKSKGGETLDECGLKFLLAVRLHTFLSTSLPPAHRAQLLRQGLSTCHYAW
AFHSEAEEELLNMLPALQKGETTWPELRSMGVGWWLRSTNKLRRCIEKVAKASFLKSNDP
LDAAMFYLAMKKKAVVWGLYRSQNNAKMTDFFRNNFTEDRWRKAALKNAFSLLGKQRFQH
SAAFFLLAGSLKDAVEVCIEKMQDLQLALVISRLYESEFETSSTYKKILQRHVLGHDKQI
PAHQNPFLRSMAHWVLEDYSRALDSLIEQPANSNSSGSTESKCVTGSSSVATCNPEVFNF
YTYLRTHPLLLRRHFGSSDKAKVGLTAEGRRADSISLEERRLFFTAAYAHLQAGCPMLAL
EVLFKMPKVHKHSKLLNQEDTGITAELSAGSKDGQASDWSQPSLNGYESDGNSLSNSKSD
SVLSFDWSQPSLKLPGDALELKWDSDKDDEEEDEDEEEFKNANTGTIADSSSVFQDTQDV
MSPLMETVIGEDSNDFLAPSDDILVAQLKFTACLKIMTNELRTLSTGYEVDGGKLRYQLY
QWLEREVVALQRCCSYKPCLPELSVQGDASVSGLAEEEEQPGSPRGDSQRSRRHWLQSNQ
PLLRMFLSYCSLHGSHGGGLASVRMELILLLQESHQDDSIQSVVTISSQPSSIPLLMACT
ANVKTVVANPIVYLTNLTHDILQTINALDSPPHPDVVNNEIYVMHTLAASLSACIYQCLC
DGHTFSHVNHFTGIVYQSVLLSQKQPVRAVSVDESVQPNTSPAQWPGIASLIRLLSSAGE
ESQPGLAVLLCEILTAVYLSLFVHGMATHSSNELFRIMAHPLNGKLWVTVFGGGARIPVM
EKPNGPTRTPPPASPSGSDRKSRRFRLLTSRSGSKEESGIEREGPSSPKHVPVVEQEAAS
IFKERFVPPDLSIWDYFIAKPLLPPSENRIEYDSEESHGSQDEDEDDDDFEDVFDPNSPR
REHSNHNSYSWCLMRLSMVQLVLVNLKSFYPMAGYDLLDLPVGSPLCHAVLKTLQRWEQV
LQKRLELFGGPPSKYISTQLQDETATPGPALLRHKVLFEPSNTPFRTNHHSALPVKRLWQ
FLVKQEEVQETFIRNIFTKKRDPNESVEDQTGNMKCSVMEETGNHQTGSELGCPGGKARI
IHKESDIITAFAINKANRNCLVMASTHDIQELDVSSILATQILTWIDDDDAETKGVGGDD
FLVIHARDDFTALHGTTPYTHSSPGTPINMPWLGGMQTGRGAAMMIKRNINNVRRMTSHP
TLPYYLTGAQDGSVRMFEWGHSQQIICFRSPGNSRVTRIRFNHQGNKFGIVDADGGLSLW
QTNTSGNAPKPFLTLQCHNKTAHDFVFVGSSSLIATAGLSTDNRNVCLWDTLVTPANSLA
HAFCCHESGATVLAMAPRQQLLLTGGRKGWISVLELPQRHQRQSFQAHDSPVKALAVDVI
EDCFISGSAEGNIKVWSLATQCLLFSFPNEHARQSLFRNLGTGVMQIEVGPANHIFSCGA
DGTMKLRVLPNRYSVGNNNNNLKNDVKFII
NT seq
9273 nt
NT seq
+upstream
nt +downstream
nt
atgaatctccatcaggtcctcacaggggctgtcaacccaggggacaattgtttctctgtc
gggagcgtcaacaatgtgccattcacggcctatgcgtcaggttgcgacgtggtaattttg
ggcagtgactttgagcgactgcagatcatcccaggagccaaacatgggaacattcaggtc
ggctgtgtcgactgctcactgcagggtggacagattgcagcttcctatggaagcattgtg
tgcgtctttgagcctgttcagcacccagatcagaaagatccaccgttgactaagttgaac
tgccaatggcagaagacgggtcagtttgtattacattctatggtacggaaccttgcctgg
caccccacaggtagcactctcctaacaggctctactagcctccagttgtggtctcatgtt
gactcagtgaaagatgaagctgaagaacggggaaagccggaagaaatgacaatgagagac
tctcattgttcctggaggtgtatctggcagagcaagacagcctctccagtcagtttaatg
aggttctcacctgatggggaattctttgctactgctggacaagatgactgcttagtaaag
gtctggtacagcaccagtaagtggaagtcaggtgtttccagactcttcactcctgcacac
cccagtgtcagtgtccagggagagctggccttctcctttgtctacctggctcacccccgt
tctgtcacgggcttctcgtggaggaagaccagcacgtgcatgccacgaggtgcagtgtgt
aatgttctgctcacctgctgtaaggacagcgtgtgtcggctctgggcagagacgttgttg
cccggtgacagcctcctgtacggtccccaccaaaaccacggctctggccaactcagtgac
acactcagatgtgcaggtcctacaagaaaacacgcctgtaacggaaagacccaaggaaat
acagcacaggagttgagttttcaagaatcatggcacttgtcctcttaccaggacgtaccc
caaccctccctgactgggtgcctgtccaaccatcagagctgccactacaaccacaagagg
atcaacagcaacatgccccatgccaacgctctctgccacttccacattgctgccagcatc
aacccagccacagacattcctctgctgccctcaatctcctctctgagtagcgcggatgac
gaggaacctggaggtccttttaccgtccactggctgaacaacaaagagcttcacttcact
ttagctatggaagtcttcctgcagcagctcagaggcagcctggagcaacagaatggctgc
tcccatgaagagcctgaagatgaggataactctgatgacgaggacaatgggagcagacca
actgacccccacggacctgagggtggggagcttcctctggcagcagtggagcaccaggtg
gacgtgctgctagaggagtggaataaaggggctgacatgttgttcagtattcaccccatg
gacggctccctgttagtctggaatgtggactggttggatgaataccagccagggatgttc
agacaagctcaggtgtcgtttgtgtcccgtatccctgtggcattcccggctggtgatgcg
atctccctgagccacagcgttgttatgtatgcctgcaacaagaacgtggatctggctatc
caacatggcagacaacgaccgtctgggagcacattgcctcaagctaaatctgctctaata
agctacagagatcaaggaaaaactctgcccagcagtagtcttcgactcaacattttcacc
cccaatgtcctcatgatctccaaacacgctgatggttccctgaaccagtgggcagtcagt
ttcgcagaggactctgctttctccactgtcctcagcgtctcacacaagtcacggtactgt
ggccaccgcttccacctcaacgacctggcctgtcactcgttactccctctcctcctcacc
acctcacaccacaacgccttgaggacaccagaggtagacagcattctggctcctccagag
gttgtttcaacatcgctaccccgtgggtcacgggccagccggctgtccctcggtgtggtt
tcccaagatcccaatgcaatctacagtgagctgattttatggagagtggaccctgttggc
ccgctgtctctgtcaggcggggtctcggagctcgcgaggatcaattctctccatgcatca
gcattcgctaacgttgcctggttgcccacactcattcccagcagctgtttaggtgtatac
tgtaactcgcccagcgcctgctttgtggctagtgacggacactcgctcaggctgtatcag
gccgttatcgaagccaagaaactcctgggtgaactctccaaccctgagatctcaaaaaat
gttggggaggtgttcaacatgatcagtcagcaatccacagcaaaaccaggctgtataata
gagctggacgccattactgactttcagggaaaggagacgcagctcctgcatgtttttgaa
gaggatctgatccttggcagtgagagaacagagagcacacagggcaatcctgattctcct
cgcactgcctccggtgagccaaccttctcggcacgttttttcctggtggtggtcgaatta
actccgacaggtcgctccctcctccacatgtggcatctccatcttgctgctcgaccaatc
accatggaggagaccaagacggagaaagatgccaccacagcttctcccatgaacagttcc
cagtttgactttgacacgttcagttctccagtaactcagaagagtaaaacctgcacttcc
agtctgcagagtgcttgtcgcctcatcctcacaacgcacagactttacagccaagagatg
gctcttccagaaggtgtagaagccatcagtgttacaccctcagcaggtcacttgagtgca
tcctgttctctgccagctggccgtgtgccttatctccttgctacttcctgttctgatggt
aaggtgcgcttctggaggtgtaatgttgtggcgacaggaccctccagtatggacaccttg
ttgtaccagtgggaggagtggccactcctgctggaggacaggtttcccaacagcagcaca
gtaagtgtgccaggtcgccccatagaggtcagctgctgtcacacaggacggattgcagtt
gcctacaggcagacgccaaacacatctttgaattcaacacttcatctgaactctaatgga
ctgttgacgtctcctcctaccctggcatcctctccctatagcacccacctgaccccaact
ctgactgtacagcgtagctcaaatcccaccccaagccctaacatagtaaacattagagaa
cctttggtacacatcagcatctttcagtgtgagtccaccggtggttcacagtggattctc
gagcagaccatcgtcgtggacagcgcagatcccacacctaactgtggtacaactaaaatg
gacttctctttacctaacgagaactgtcttggttccactagtaagagccttgttcatttg
gactgggtgtcccaagaggacgggtcacatgttctgactgttggtattgggaccaagatt
tatatgtacggccgtcttgctgggaaacctccagaactgggtctgtcatctgaagcaagt
agagaacagagcttgtctcgtctagttctgcttcgatcagtcgatctggtctcctcagtt
gaaggctcattacccatcccggtctccctctcctgggtacgagacggcatcttagttgta
gggatggactgtgagatgcacgtctactcccagtggcagctcccaacaccacccagaccc
agtgctgtcattaaccaagacaccgacatcagcagcagtgtctcctccattatctcagct
gtcagacagagccaggaggagggactcagtcctggtgctcctgtgtcttcactagctcct
cccaaaaaggccttgacaaggtcgatgatgagtctggctcagaaactcagcgggaagagg
acggcttatgacctgcctgtagagatggaagattctggactttttgaagcagctcaccaa
ctctttcccactctgccgcaataccatcctgtacaattactggagctcatggatcttggt
aaagttcatcgtgccaaagccatcctctctcacctcgtgaaatgcattgctggagaaatt
gtgccacttaaagacagtaccggcaatccagagagacgtgtgcgctctcgaaccatcggt
gctggtggaagcacagccagggatccaaagatgttcaatatcacagagaactctgcccct
gactacacggagataagctccatccctcccctgcctctgtacgcccttctagcagctgat
gaggatacatcacgaaaaactgatacagtgggcagtgtgagtggagatagtgggcacggt
tccagtcacacagatgcttacgatgagctcttccatacacccagcatagtggacctggat
cctctggacaatgatgaagaggaaactggaaacaaggttattgacctgtctcagtacagt
cccacatactttggtccggaacatgcccaggttctgtccagccacctccttcactccagt
ttgccaggattaacttgtatggagcagatgtctctcatggcgttggccgacaccattgct
agcacaagcacagacctcaagggcagccagggcaaaagcaaaggtggagagacactggat
gagtgtggtctgaagttcttgctggccgttagactgcacaccttcctctctacctccctg
cctccagcgcaccgagcacagctgctacggcaaggcctgtcaacgtgtcactatgcctgg
gccttccactctgaagctgaggaggagctgttgaacatgctccctgccctacagaagggg
gagaccacctggcctgagctacgctccatgggtgtgggctggtggctgcgcagcaccaac
aagctacgcaggtgtattgagaaggttgccaaggcttcttttctgaagagcaacgatcca
ctggatgcagctatgttttacctcgcaatgaaaaagaaggcagtggtctggggattgtac
aggtctcagaacaatgccaaaatgacagactttttccgcaacaacttcaccgaggaccgg
tggagaaaggcagcattgaaaaatgccttttcactattgggaaagcagcgcttccagcat
tctgcagcattctttcttctagctggctccctgaaggatgccgttgaggtttgtatagag
aaaatgcaggacctgcagctggctctggtgatctccagattgtatgagtctgagtttgag
acgtcatccacctacaaaaagatcctccagagacacgttctgggtcacgacaaacagatt
ccagcccaccagaacccgttcctgcggagcatggctcactgggtcctggaggactacagc
agagccttggactctttaattgagcagcctgcgaacagcaacagctccgggtccactgag
agcaaatgtgtcactggttcctcttctgtggctacatgcaaccctgaagttttcaacttt
tacacctacctccgcacgcacccactcctccttcgccgccattttggctcgtcagacaag
gctaaggttggcctgactgctgagggtcgccgggctgactccattagcctggaggagaga
cgactgtttttcactgctgcatatgcacatttacaagctggctgccccatgcttgcactt
gaagtcctcttcaagatgcccaaagtccacaagcattccaaactcctgaatcaggaggat
acaggaatcaccgctgagctcagtgccgggagtaaagatggacaagcatcagactggtcc
cagccgtctctgaatggctacgagtcggatgggaacagcttgtccaacagtaaatcagat
tcggtgttgagttttgattggagccagccatcactgaaacttccaggggatgccctggag
ctgaagtgggacagcgacaaagatgatgaagaagaggatgaggacgaagaggagtttaaa
aatgctaacactggtacaatcgcagacagcagcagtgtgttccaggacacacaggacgtc
atgtcaccgctaatggagacagtgatcggggaggacagcaatgacttcctggcaccatct
gatgacatcttggtggctcagctgaagtttactgcctgcttgaagattatgaccaatgag
ctgcggacgctgtcgacggggtacgaagtcgatggggggaagctgcgttaccagctctac
cagtggttagaaagagaggtggtggctctccagcgttgctgcagctacaagccctgcctg
ccagagctgtctgtccagggtgatgcctctgtttctgggttggcggaggaggaggaacag
cctgggagccctcgtggtgacagccagaggagcaggagacactggctgcagagtaaccag
cccttgctgaggatgtttcttagctactgcagcttacatggctcccacggcggaggactg
gcttctgtacgcatggagctcatattgcttcttcaggagtctcaccaggatgactccatc
cagtcagtggtgacgatcagttcccagccctcctctatccctctccttatggcctgcaca
gccaacgtgaagacagtggtggccaatcccatcgtctacctgaccaacttgactcatgac
atcttgcagaccatcaatgcacttgactcacctccacatcctgatgtggttaacaatgag
atctatgtgatgcacaccttggctgcttccttgtctgcctgtatatatcagtgtctgtgt
gacggacacaccttcagccatgtgaaccatttcaccgggattgtttaccagagtgtgttg
ctgtctcagaaacagccagtcagagctgtcagcgtggacgagtccgttcagcccaacact
tctcctgcacagtggccaggtatcgcctctctgatccgtctgctgagctcagcaggtgag
gagagccagccaggcttggccgtgctgctctgcgagatcctgactgccgtatacctcagt
ctgtttgttcacggcatggccactcactccagcaacgagctgtttcgcatcatggcccac
cctctcaacggcaagctctgggtaacagtgttcggaggaggtgcccggatccccgtcatg
gagaaacctaacggcccgacaagaacacccccaccagcttctccgagcggctcagacaga
aagtccagacgattccggcttctgacatcacgcagtgggtccaaagaggagtctgggata
gagcgggagggaccatccagtcccaagcatgtccctgtagtggaacaagaagctgcctcc
atctttaaagaaagatttgttcctccagacctcagcatttgggattattttattgccaag
cctttgctgccaccatcagaaaacagaatagagtacgactctgaggagagccatggcagt
caggatgaagacgaggatgacgatgactttgaagacgtctttgaccccaactctccgcgg
agagagcattcaaaccacaattcatacagttggtgtttgatgcggctgtcaatggttcag
ctggtgttggtcaatctgaagtccttttacccaatggcaggatatgatctattagatctg
cctgtgggctctcctctgtgtcacgctgtgctgaagacgctgcagcgctgggagcaggtg
ttgcagaaaagactggagctgtttggaggacctccttccaaatacatctccacacagctc
caggatgaaactgccacacccggccccgctctgctccgacacaaggtcttgtttgaaccg
tccaacaccccattcaggaccaaccaccattcagcgctgccagtgaaacgtttgtggcag
tttctggtcaagcaggaggaagtgcaggagactttcattagaaatatcttcaccaaaaaa
cgggacccgaatgagtcggtcgaggaccagactggcaatatgaaatgttcagtgatggag
gagacaggaaaccatcagactgggtcagagctgggctgccctggaggaaaagcacgcatc
atccacaaagaatctgacatcatcacagcctttgccatcaacaaggcaaatcgtaattgt
ctagtcatggcctccacacatgacattcaggagctggatgtgtcatctatcttggccaca
caaattttgacatggatagacgacgatgatgccgaaaccaaaggtgttggaggtgatgac
ttcctggtgatccatgcacgtgacgacttcaccgccctccatggcaccacgccgtacacc
cacagtagccctggcacacccatcaacatgccgtggctgggaggtatgcagacaggccgg
ggggcagccatgatgatcaagagaaatatcaataatgtgagaagaatgacctctcatccc
acactgccttactacctgacgggggctcaggacggtagcgtgcggatgttcgagtggggt
cactcccagcagatcatctgcttcagaagtcctggcaactccagagtcaccaggatccga
ttcaaccaccaaggcaacaagttcggtatcgtagatgctgatggaggtttgagtctctgg
cagaccaacacaagtgggaatgcacccaaaccattcctgacgttgcagtgccacaacaag
acggctcatgacttcgtctttgtgggctcctcctccctcatcgccactgcaggtctttca
acagacaacaggaacgtgtgtttgtgggacactctggtgactcctgctaacagcctcgca
cacgctttctgctgccacgagtcgggtgccaccgtgctcgccatggccccccgacagcag
ttgctcctcacaggcgggaggaaaggctggatcagcgtcctggagcttccccagaggcac
cagcggcagagcttccaggcccatgactctccggtcaaagctctggccgtcgatgtgatt
gaggactgcttcatcagtggatcagctgagggcaacatcaaggtttggagcctggccacg
cagtgtctcctcttctcgtttccaaacgagcacgcccgccagtcgctgttcaggaacctg
ggcacgggcgtcatgcagatcgaagtggggccggccaatcacattttctcctgcggcgcc
gatgggaccatgaagttgagggtcctccccaaccgctacagtgtcggcaacaacaacaac
aacctcaagaacgatgttaaattcatcatatag
DBGET
integrated database retrieval system
