Hippoglossus stenolepis (Pacific halibut): 118114647
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Entry
118114647 CDS
T08308
Symbol
cltcl1
Name
(RefSeq) clathrin heavy chain 1 isoform X1
KO
K04646
clathrin heavy chain
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04142
Lysosome
hsp04144
Endocytosis
hsp05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09140 Cellular Processes
09141 Transport and catabolism
04144 Endocytosis
118114647 (cltcl1)
04142 Lysosome
118114647 (cltcl1)
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
118114647 (cltcl1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hsp04131
]
118114647 (cltcl1)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hsp04147
]
118114647 (cltcl1)
Membrane trafficking [BR:
hsp04131
]
Endocytosis
Clathrin-mediated endocytosis
Clathrin
118114647 (cltcl1)
Exosome [BR:
hsp04147
]
Exosomal proteins
Proteins found in most exosomes
118114647 (cltcl1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Clathrin
Clathrin_propel
Clathrin_H_link
Clathrin-link
TPR_PEP5_VPS11
TPR_COPA_B
TPR_Vps41
Gp18_dom_I
capSnatchArena
LVIVD
Motif
Other DBs
NCBI-GeneID:
118114647
NCBI-ProteinID:
XP_035021091
LinkDB
All DBs
Position
9:22040544..22066661
Genome browser
AA seq
1705 aa
AA seq
DB search
MAQILPIRFQEHLQLQNLGVNPANIGFSYLTMESDKFICIREKVGEQNQVVIVDMSDPTN
PIRRPISADSAIMNPASKVIALKDAAKTLQIFNIEMKSKVKAHTMTEEVMFWKWISVNTV
ALVTDTAVYHWSMEGDSQPTKVFDRHASLAGCQIINYRTDEQQKWLLLIGISAQQNRVVG
AMQLYSVDRKVSQPIEGHAAAFGEFKVEGNTKLSTLFCFAVRSPGGGKLHIIEVGQPATG
NQPFAKKAVDVFFPPEAQTDFPVAMQIGSKHGVIYLITKYGYIHLYDLESGVCIYMNRIS
AETIFVTAPYETTSGIIGVNKKGQVLSVCVEEENIVNYATNVLQNPDLALRMAVRSNLAG
AEELFGRKFNTLFAQGTYSEAAKVAASAPKGILRTAETIRKFQSVPAQPGQASPLLQYFG
ILLDQGQLNKFESLELCRPVLQQGRKQLLEKWLKEDKLECSEELGDLVKASDPTLALSVY
LRANIPSKVIQCFAETGQFQKIVLYAKKVGYTPDWVFLLRNVMRVNPDQGLQFAQMLVQD
EEPLANINQIVDVFMEGNLIQQCTSFLLDALKNNRPAEGHLQTRLLEMNLIHAPQVADAI
LGNQMFTHYDRPHVAQLCEKAGLLQRALEHYTDLYDIKRAVVHTHLLNPEWLVNYFGSLS
VEDSLECLRAMLSANIRQNLQLCVQVASKYHEQLGTLALVELFESFKSYEGLFYFLGSIV
NFSQEPDVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKLTDQLPLIIVCD
RFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRLPVVIGGLLDVDCAEDVIKNLIMVVRGQ
FSTDELVEEVEKRNRLKLLLPWLESRIHEGCEEPATHNALAKIYIDSNNTPERFLKENPF
YDSAVVGRYCEKRDPHLACVAYERGQCDLDLIKVCNENSLFKSEARYLVRRKDPELWANV
LEEDNPFRRQLIDQVVQTALSETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFS
EHRNLQNLLILTAIKADRTRVMEYINKLDNYDAPDIANIAISNELFEEAFAIFKKFDVNT
SAIQVLIEHIGNLDRAYEFAERCNEPAVWSQLARAQLQRDLVKEAIDSYIKAVDPSAYME
VVNAASKNNNWEDLVKFLQMARKKARESYVETELIFALAKTNRLAELEEFVSGPNNAHIQ
QVGDRCYEEGMYEAAKLLYNNVSNFARLASTLVHLGEYQAAVDSARKANSTRTWKEVCFA
CVEGEEFRLAQICGLHIVIHADELEDLISYYQDRGYFEELIALLEAALGLERAHMGMFTE
LAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQSHLWAELVFLYDKYEEFDNAVLTMM
SHPTDAWKEGPFKDIVAKVANVELYYKSLSFYLDFKPLLLNDLLTILSPRLDHSRAVNFF
SKLNQLKLVKPYLRSVQSHNNRSVNEALNNLLTEEEDYQGLRASIDAYDDFDTIGLAQRL
EKHELIEFRRIAAYLYKGNNRWRQSVELCKKDKLYKDAMLYAAESKDAELAETLLQWFLE
EGRKECFAACLFASYDLLHPDVVLEVAWRHNIMDFAMPYFIQVMREYLTKVDEFAAQVMV
DKLEETESQRQTEEEVTEPQPIVFGQQLMLTGAAAPVAPPPAYSGYGYPANAAGFPPQAA
AAAAATAAAAAAAGYPAQPAYGFNM
NT seq
5118 nt
NT seq
+upstream
nt +downstream
nt
atggctcagatcctgccgatacgcttccaggagcatctgcagttgcagaacctgggcgtg
aacccagccaacattggcttcagctatctgaccatggagtcggacaagttcatctgcatc
cgagagaaggtgggcgagcagaaccaggtggtgatcgtggacatgtccgaccccaccaac
ccaatcaggagacccatttctgccgacagtgccatcatgaaccccgccagcaaggtcatc
gccctgaaagacgctgccaagacactgcagatcttcaacatcgagatgaagagtaaggtg
aaggctcacacgatgacggaggaggtcatgttctggaagtggatatcagtaaacactgtt
gccttggtgacggatacggccgtctatcactggagcatggagggggattcccaaccgacc
aaagtattcgatcggcacgccagtctggcaggatgtcagatcatcaactacagaactgac
gagcaacagaagtggctactgctgatagggatctctgcacagcaaaaccgtgtagttgga
gcgatgcaactgtattctgttgacaggaaagtgtctcagcccatcgaaggccacgctgct
gccttcggggagttcaaagtggagggaaataccaaactctccacccttttctgttttgct
gtgcgctcccctggtgggggaaagttgcacatcattgaagttggtcaaccagcaacagga
aaccagccctttgctaagaaggcagtggatgtgttcttccctccagaagctcagacagac
tttcctgtagcgatgcagattggcagtaagcatggtgtaatatatttgatcactaagtac
ggttacatccacctgtatgacctggagtctggagtgtgtatctacatgaatcgaatcagt
gcagagaccatctttgtcactgctccttatgaaaccacctcaggaataatcggggtcaac
aagaagggacaggtcttgtcagtctgcgtcgaggaggaaaacattgtcaactatgccacg
aacgtccttcagaaccctgatcttgccctgaggatggctgtgaggtcaaacctcgctggg
gctgaggagctgtttggccggaagttcaacactttgtttgcccagggaacttattcagag
gctgcgaaggttgctgcatcagcaccaaagggaatcttgaggacggcagagaccatccgt
aaatttcagagtgtcccggcccagccaggtcaggcctctccactgttgcagtactttggt
attcttctggaccagggccagctgaacaagtttgagtctcttgaactgtgcaggcctgtc
ctgcagcagggccgcaagcaactgctggagaaatggttgaaggaggacaagctggagtgc
tcagaagagctgggagacctggtgaaggcctctgaccccacactcgctctcagtgtgtac
ctcagagcgaacatccccagcaaggtcatccagtgctttgcagagactggccagttccag
aagatagtgctgtatgccaaaaaggtgggctacaccccagactgggtgtttttactgaga
aatgtgatgcgtgtcaatccagaccagggacttcagtttgcccagatgctggtccaggat
gaggagccgctggccaacatcaaccagattgtagatgttttcatggagggcaacctgatc
cagcagtgcacctccttcctattggatgcgttaaagaacaaccgcccagctgaaggacac
ttacagacacgtctgcttgaaatgaacctcatacatgccccccaggtggcagatgcgatc
ctggggaaccagatgttcacacactacgaccgtccccatgtcgctcagttgtgtgagaag
gcaggtctgctgcagagagctcttgaacactacaccgacctgtatgatatcaaacgagct
gtggtgcacacgcatctgctcaaccctgagtggctggtgaactattttggctctttgtca
gtagaagactcgttggagtgtttgagggccatgctgtcggctaacatcagacagaacctg
cagttgtgtgtccaggtagcatctaagtatcacgagcagctgggaactctggcattagtg
gagctcttcgaatccttcaagagttatgaaggattgttttacttccttgggtcgattgtg
aatttcagccaggagcccgacgtccactttaagtacatccaggccgcctgtaaaacgggt
caaatcaaagaagtggagagaatatgtagagagagcaactgttatgacccagagagggtt
aaaaacttcctcaaggaggccaaactaacagaccagcttccgcttatcattgtgtgtgat
cgctttgacttcgtccatgatctcgtgctttacctctaccgcaacaatctacagaaatac
attgaaatctatgtacagaaggtgaacccgagtcgtttaccagtggtgataggtgggctg
ctggatgtcgactgtgctgaggatgtcattaagaacctgatcatggtggtcagagggcag
ttctccactgatgagctggtagaggaggtagagaagagaaacaggttaaagcttctgttg
ccgtggctggagtcccgtatccacgaaggctgcgaggagccagccactcacaacgccctc
gctaagatctacatcgacagcaacaacacacctgaacgtttcctgaaggagaatccgttc
tacgacagcgccgttgttggtagatactgtgagaagagagacccccacctggcgtgtgtg
gcttatgagagaggacagtgtgacctggacctcatcaaagtttgcaatgagaactcgtta
ttcaagagtgaggctcgatatcttgtacgacggaaagatcccgagctgtgggcgaacgtg
ttggaagaagacaaccccttcagaagacaactcattgatcaggtggtgcagacagcgctg
tcagagacgcaggacccagaggaagtgtccgtcactgtcaaggctttcatgacggcagac
ctgcccaacgagctgattgagctgctggagaagattgttcttgataactctgtcttcagc
gagcacagaaacctccagaacctgctgattttgacagccatcaaggccgaccgcactcgg
gtgatggagtacatcaacaagctagacaactatgacgctccggacatcgccaatatcgcc
atcagcaatgagctctttgaggaagcatttgccattttcaagaagtttgacgtcaacacc
tcagccatacaggtcctgatagagcacatagggaacttggatcgtgcctatgagtttgct
gagcgctgtaacgagcctgcggtgtggagccagttagccagagctcagctgcagagagac
ctggtcaaggaggctattgactcgtatatcaaagccgtggacccgtcagcgtacatggag
gtggtcaacgcagccagcaagaacaataactgggaggacctggttaaattccttcagatg
gctcgaaagaaagcgagagagtcgtacgtggagacggagctgatctttgctttagccaag
accaaccgtctggccgagcttgaggagttcgtcagtggacccaacaatgctcacatacag
caggtgggcgatagatgttacgaggagggcatgtacgaagcagccaagctcttgtacaac
aacgtgtccaactttgctcgacttgcatcgacacttgtccacctcggggagtatcaggcg
gctgtggacagcgcaaggaaagccaacagcacacggacatggaaggaggtatgctttgcg
tgtgttgagggcgaggagtttcggctggcacagatctgcggcctccacatagtgatccac
gctgacgagctggaggatctgatcagctactatcaggaccgtggctacttcgaggagctc
atcgctctactggaggccgcgctgggactggagcgggctcacatgggcatgttcaccgag
ctcgccatcctctactccaagttcaaacctcagaagatgagggagcacctggagctgttc
tggtccagagtcaacatcccaaaggtccttcgggcagcggagcagtctcacttatgggca
gagctggtgttcctttacgataagtacgaggagttcgacaacgctgtcctcacaatgatg
tctcatcctacagatgcatggaaagaagggccgttcaaagacatcgttgctaaggtggcc
aacgtggagttgtactataaatctctgtccttctacctggatttcaaacctctactactg
aacgacctgctgactattctgtctccacggttggaccacagccgagcggtcaacttcttc
agcaagctgaaccagctgaagttggtgaagccttacctgagatctgtccagagtcacaac
aacaggtccgtcaacgaagctctcaacaacctgctgacagaggaggaagactaccagggt
ctgagagcatcaatcgacgcctacgacgacttcgacaccatcggcctggctcagaggtta
gagaaacacgaactgattgagttcagacgtatcgctgcctacctgtacaagggcaacaac
cgctggagacagagtgtggagctctgcaagaaggacaaactctacaaggatgccatgctg
tacgctgcagagtcaaaggacgctgagctggcggagacgctgcttcagtggttcctggag
gagggcaggaaggagtgcttcgccgcctgcctctttgcctcctatgacctgcttcacccc
gacgtggtgctggaggtcgcctggaggcacaacatcatggacttcgccatgccgtacttc
atccaggtcatgagagagtacctcacaaaggttgatgagtttgcagcgcaggtgatggtg
gacaagctggaggagacagaaagccaaaggcaaactgaggaggaggtgacggagcctcag
ccgatagtgttcggccagcagctgatgttgactggcgctgctgctccagtggcgccgccg
ccagcgtactcaggctatggctaccctgccaacgcagcgggcttccctcctcaggccgcc
gccgccgccgccgcaactgctgctgctgctgccgccgccggctatcctgcacagcctgct
tatggcttcaacatgtag
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