Hippoglossus stenolepis (Pacific halibut): 118114817
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Entry
118114817 CDS
T08308
Symbol
thbs4a
Name
(RefSeq) thrombospondin-4a isoform X1
KO
K04659
thrombospondin 2/3/4/5
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04145
Phagosome
hsp04510
Focal adhesion
hsp04512
ECM-receptor interaction
hsp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118114817 (thbs4a)
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
118114817 (thbs4a)
09144 Cellular community - eukaryotes
04510 Focal adhesion
118114817 (thbs4a)
09142 Cell motility
04820 Cytoskeleton in muscle cells
118114817 (thbs4a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hsp04131
]
118114817 (thbs4a)
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hsp04147
]
118114817 (thbs4a)
00536 Glycosaminoglycan binding proteins [BR:
hsp00536
]
118114817 (thbs4a)
Membrane trafficking [BR:
hsp04131
]
Endocytosis
Phagocytosis
Opsonins
118114817 (thbs4a)
Exosome [BR:
hsp04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
118114817 (thbs4a)
Exosomal proteins of colorectal cancer cells
118114817 (thbs4a)
Exosomal proteins of bladder cancer cells
118114817 (thbs4a)
Glycosaminoglycan binding proteins [BR:
hsp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118114817 (thbs4a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TSP_C
TSP_3
EGF_CA
EGF_3
COMP
EGF
EGF_MSP1_1
DUF7630
Motif
Other DBs
NCBI-GeneID:
118114817
NCBI-ProteinID:
XP_035021403
LinkDB
All DBs
Position
9:14706564..14715086
Genome browser
AA seq
982 aa
AA seq
DB search
MMCVWARAAALSLVLQQLVLTVSAEGTVYDLLASPDCLPDLLQGKLKSKGQDEAFLLSSF
RLHNKAPTSLFSVINPKDNTKYLDFSVQAKLSKVTIRYLRTDGRFGTTSFNHASLADGRI
HHVMLHARGLQRGPPRLNIYIDCTLAHSLDDLPAAFGSLPPGSNKVALRTLQSSGQNELT
DFKLVTEDTIENVATLQDCSVEHSESVHVLGFQGGREEQNQATMEELKSMLTELREMLLK
QIKETTFLRNTIAECLACGLGGSPTNTRPPPPPPPGPVQDVMQPRPLTQCPPGTCFRQNM
CIRSELGDFHCAPCSDGYTGDGVHCDDVDECQFKPCFPGVRCVNTAPGFRCERCPEGYTG
PEINGVGVSYAKSHKQVCEDIDECLGPPENGGCTTNSHCHNTMGSFRCGECKTGFTGDQV
NGCQGTRLCPNGKPNPCDANAECVVLRDGSISCVCGVGWAGNGYVCGKDTDIDAYPDIKL
QCRDNNCKQVLIPTPALLSCTSFIVIFKLNTAHVFPQDNCVFVPNSGQEDADRDGAGDAC
DDDADSDGIINIDDNCWLVPNVDQRNSDNDVHGDACDNCRTIDNPRQTDTDQDGLGDECD
DDMDGDDLKNILDNCPRVPNPDQRDRDHDGVGDACDSCPDMANPNQSDSDDDLIGDSCDD
NIDSDGDGHQNTNDNCPTVINSSQLDTDKDGKGDECDDDDDNDGVLDNEDNCRLVPNPDQ
QDSDNNNVGDACEGDFDKDNVIDIIDLCPENAEVTLTDFRAYQTVVLDPEGDSQIDPNWM
VLNQGMEIVQTMNSDPGLAVGYQAFSGVDFEGTFHVNTVTDDDYTGFIFGYQDSSSFYVV
MWKQTEQTYWQAAPFRAVAEPGIQLKMVKSETGPGEHLRNSLWHTGDTTGQVRLLWKDPR
NVGWKDKVSYRWFLQHRPQVGYIRARFFEGSDLVADTGVIIDTSMRGGRLGVFCFSQENI
IWSNLKYRCNDTIPADYQDVSA
NT seq
2949 nt
NT seq
+upstream
nt +downstream
nt
atgatgtgtgtgtgggcccgagcagcagctctgtctctggtgctgcaacagctggtgctc
actgtctcagctgaagggaccgtctacgacctgctggcgtctccggactgcctgcccgac
ctgctccaagggaagctgaagagcaaagggcaggacgaggctttcctcctctcctccttc
aggctccacaacaaggcccccacgtctcttttcagtgtcatcaaccccaaagacaacacc
aagtacctggacttcagtgtgcaggccaaactaagcaaggtcaccattcgttacctgagg
accgacggcagatttggcacaaccagtttcaaccacgcctccctggcagacggcagaatt
catcatgtgatgctacatgccaggggtctgcagcgtggtccacctcgcctcaacatctac
atagactgcacactggcgcactctctggatgatcttccagctgcgtttgggtcactcccg
ccgggttctaacaaggtggctctgaggacgctgcagtcaagtggacagaatgaactgaca
gacttcaagctggtgacagaggacaccatagagaacgtggccactttgcaggactgtagt
gtggagcacagtgaatctgtgcatgtgttgggtttccagggaggcagggaggaacaaaac
caggccaccatggaggagctgaagagcatgttgactgagctgagggagatgctgctcaaa
cagattaaggagacaacttttctgaggaacaccatcgctgagtgtcttgcctgtggtctt
gggggttctccaaccaacactcgtccacctccacctccacctccaggtccagtgcaggat
gtcatgcagcctcgtcctctgactcagtgtccacctggaacctgtttcagacagaacatg
tgcatccgctcagagttgggggatttccactgtgccccatgttcggatggatatacagga
gacggggtgcactgtgatgacgtagatgagtgtcagtttaagccatgtttccctggtgtc
cggtgtgtgaacactgctcctggttttcgctgtgagagatgccctgagggttatactgga
ccagagataaacggagtgggagtatcctatgctaaatcacacaaacaggtatgtgaggat
atagacgagtgtctgggcccacctgagaatggaggttgcactaccaactcccactgtcac
aacaccatgggctccttccgctgcggcgagtgtaaaactgggttcacgggtgaccaggtg
aatggttgccagggcaccaggctttgccccaacggtaaacccaacccctgtgacgccaac
gctgagtgtgttgtgctgcgggatggtagcatcagctgtgtgtgtggcgtcggctgggca
ggtaatggctacgtgtgtggaaaggacacagatattgacgcatatcctgacataaagctc
cagtgcagagacaacaactgtaagcaggtactcattcctacacccgctctcctctcatgc
acttcattcattgttatattcaaacttaacactgcacacgtgttcccccaggacaactgt
gtgtttgtgccaaactctggccaagaggacgcagacagggatggggcgggtgacgcctgc
gatgatgatgcagacagcgatggcatcattaacatagatgacaactgctggctcgttcct
aatgtggaccagaggaacagcgacaacgatgtccatggtgacgcgtgtgacaactgcaga
actatagacaatcccagacagacagatacagaccaggacgggctgggagatgaatgtgat
gatgacatggatggagacgacttgaagaatattctcgacaattgcccacgggtccccaac
ccagaccagagggacagagaccatgacggggtgggggatgcctgtgacagctgtcctgat
atggccaatcctaaccagtcggactcagacgacgacctgattggagatagctgtgacgac
aacatagacagtgacggggacggacaccagaacacaaatgacaactgtcccacagttatc
aactcctctcagctggacactgacaaggatggaaagggagatgaatgtgacgatgacgat
gataatgacggcgtactggacaacgaagacaactgcagactagttcccaacccagatcaa
caggactctgacaacaacaatgttggagacgcatgcgaaggggactttgacaaagacaat
gtcatcgacatcatcgacctctgcccagagaacgctgaggtcacgctcaccgacttcaga
gcctatcagacggtcgtgctggacccagagggcgactcccagattgaccccaactggatg
gttctcaaccagggcatggagatagtgcagaccatgaactctgaccctggacttgctgta
ggctaccaagcgttcagcggggtcgacttcgagggaacgttccacgtgaacacggtgaca
gacgacgactacacaggcttcatcttcggctaccaggactcctcctcgttctacgtggtg
atgtggaaacagacagaacaaacctactggcaggctgcgcccttcagggctgttgcagag
ccgggaatacagctcaagatggtgaagtcggagacaggcccaggtgagcatctgaggaac
tccctctggcacacaggggacaccaccgggcaggtccgtctcctgtggaaagacccaagg
aacgttggctggaaggacaaggtttcctaccgctggttcctccagcaccgaccacaggtt
ggatacatcagggctcgtttctttgagggttcagacctggtggctgacacaggcgtgata
attgacaccagtatgagagggggacgactgggagtgttctgcttctctcaggaaaacatc
atctggtccaatttgaaatatcgttgcaacgacacaattcctgccgactaccaggatgtc
agtgcctag
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