Hippoglossus stenolepis (Pacific halibut): 118114915
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Entry
118114915 CDS
T08308
Name
(RefSeq) C-myc promoter-binding protein-like isoform X1
KO
K20163
DENN domain-containing protein 4
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hsp04131
]
118114915
Membrane trafficking [BR:
hsp04131
]
Protein recycling
Rab GTPases and associated proteins
Other Rab GTPase associated proteins
118114915
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Gene cluster
GFIT
Motif
Pfam:
DENN
dDENN
uDENN
PPR_2
PPR_3
DUF2464
PPR_long
PPR
Motif
Other DBs
NCBI-GeneID:
118114915
NCBI-ProteinID:
XP_035021605
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All DBs
Position
1:3129944..3183047
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AA seq
2021 aa
AA seq
DB search
MMEDKGPRVADYFVVAGLTDSSKPLDQEIHFDDVCHKTAKPKAPVTDVALVIRSMGEEVP
PGFTCIETTPGGHSADLNNGGLMAPQIFICYRRGRDKPPLTDLGVLFEWKERLKQGCHLI
QTTPTGRPANISGNSSQRIYVTYRRAPESQPHAALAVTDICIIIPSKGESPPHTFCKVEK
NLNSSMWGSSVYLCYKKSVAKTNTIAYKAGLFSRYPEEDYESFPLPESVPLFCLPMGATI
ECWPANTKYSLPVFSTFVLTGSSGEKVYGAAIQFYEPFPQECLTDQQLSQLGLLSLDPPK
PSSASPNPAASTSDNTSGNTSDPRLVHTNKCICLLSHWPFFDAFRKFLTFLYRYSISGPH
ALPIEKHISHFMHKVPFPSSQRPRILVQLSPHDSLMLSQPVSSPLPLSGGRFSTLLQNLG
PENAITLLVFAVTEHKILVHSLRPAVLTSVTEALVSMIFPFHWPCPYIPLCPLALADVLS
APCPFIVGVDSRYFDLYDPPPDVSCVDLDTNTIFHNEDKRALTWKILPKKACKNLMNVLS
NLYQQLVDGQQRPDGLLELSMSDSSELSCGKSLHTLELEIQEAFLRFMAAILKGYRSFLR
PITQAPSEKATDASSLFDLQGFLKSRDRSHQKFYSLMTKTQMFIRFIEECSFVSDKDASL
AFFDDCVDKLYNSERSADKGGKVDGEKPEESRLMEFDESQRSEHTVFITPPELPPLPEGE
EHPLCYRYDGFPVLSLDLFDPVEGLRTPSSRLAARHSCPTSPAPMFRRTKQEIKLSQKIA
KKYSSIPQLWSKCLLRHCYGLWFICLPAYVKVCHSKVRALRTAYDVLRKMQAKKLQPPDE
VCYRVLMQLCGQYGQPVLAVRVLFEMKKAGIHPNAITYGYYNKAVLESTWPSSTRGGYFL
WMKLRNVVLGVAQFKQALRRQGPVTQSPLSDGSDLDAVSHGSLESSADTNPAEQGPYATD
SVKVDPTDDRSSTVGRGGGSVGARAPVAHSHWGGSELREATLHPGDQSDLGYNSLSKEEV
RRGDPSSQDAAPDKEEKKESDCSSLSETESAKGSKDCLPQLDVEVHSSFRPRGIVRSSCA
FDDSSCKPKSSVSTGHVAGLLFTSSLDEICEVQTNSLLRRHRSALEEVVGSASSGSALEW
QGVRGRRLSGDTVGSSGSGTTVLGLGMSQGETDPDKIAGHLGADARILSAANFSKSKRPR
SLAFGGSEGDAAKTSAARRLDHREEEEEMEGQDSSDEDRSNTEAIFDLEDLDLDKPATGP
GVNAHQGHKHKKLVERSASYGAMSPGASRGAVKRTGIEMGYDPLSLLAAESQTEQQGEDR
YPEGDEGSTPSAGRHLAREIELYMNHMGSPLTSRTPSLDLQDPASPLLLHPSSICGPRRA
SLPHSSSLRTAGVPRSCTYHPPSPSHPISRQRLWSSPPRRSSSTTPSPSPRPSPYRERAD
RMSLASPSPSSSSFALDTLLTPTLDVFKTSVVSAGKGVAEKASRWYSRLATYTTPTKDGH
GDRLSVGDPDGSSLLDEEDGGGSESSVVSPQRNGPRRSRLDSPSAGCSQMRPTSLLPGCV
LSPPGFSLPDKSDAGSSHYTSNTSIFNNYAMELLISSCSRCKTCDCLVYDEEIMAGWTAD
DSNLNTTCPFCGNPFLPFLNVEIRDMRGPGRLFLKGSPSVDEAMTSSYSASTGFDTGTST
LSTPCPATAVSPLSPVVAVQESSGDGRTRATRAQGINIPSGCRQGMASPGAPMARSVSTF
NPLEEASRPSRCVPTSGSLPSRLNEASDPLNMEWRLHNPEPVTVPYLSPLVLWKELESLL
ENEGDPVITEADMVDHHPIIYWNLVWYFRRLDLPSNLPGLILTSEHCNRDSQVPRHWMSE
DSKHVLIQILWDNLKLHQDPIQPLYIVWNTFRLNCTLLLENVGYPLSRPVPEEEKPFSEE
LLQSVVKSIQRNDISRPMAQLLQLLAQTLGAKRQRSLYRDVLFLSLVALGKDNIDIDAFD
REYKLAYDRLVPSLVKLTHNCDRPPSTGVMECRRTFGEPYL
NT seq
6066 nt
NT seq
+upstream
nt +downstream
nt
atgatggaggacaaaggccctcgtgtagccgactacttcgtggtggctggtctgacggac
tcgtccaagccgttggaccaggagatccactttgacgatgtctgccacaagacggccaag
cccaaagcgcccgtcaccgacgtggccctggtgatccgctcgatgggcgaggaggtgccg
ccggggttcacctgcatcgagacgacgcccggcggccattcagccgatctgaacaacggc
ggcctcatggcgccacagatcttcatctgctacaggcgaggtcgtgacaagccaccactc
actgaccttggtgtgttgtttgagtggaaggagcgactgaagcagggctgccacctcatc
cagaccacgcccaccggtcgtccggccaacatcagcggcaattcctctcagcgcatctac
gtcacgtaccgccgggcgcccgagagtcagccacacgccgccctggccgtcacggacatc
tgcatcatcatcccgagcaagggggagtcaccgccgcacaccttctgtaaggtggagaag
aatctcaacagcagcatgtggggctcgtctgtttacctgtgttacaagaagtctgtggcc
aaaaccaacacaatagcctacaaagcaggtttattcagcagatatccagaggaggactat
gagtcattcccgctgccggagtcggtccctctcttctgccttcccatgggggccacgatc
gagtgttggccggcaaacaccaaatactccctccctgtattctccacctttgtcctcaca
ggatcctctggagagaaggtgtacggtgctgccattcagttctacgagcccttcccacag
gagtgcctgaccgatcagcagctctcccagcttggcctcctgagcctggatccacccaag
ccctcctccgcctccccgaaccctgcggcttcaaccagcgacaacaccagcggcaacacc
agcgacccccgcctggtccacaccaacaagtgcatctgtctgctctctcactggcccttc
tttgacgcttttcgcaagttcctcacattcctgtaccgctactccatctctggccctcat
gccctgcccatcgagaagcacatctctcattttatgcacaaagttcccttcccctcctct
cagaggcctcgcatcctggtgcagctttcccctcatgacagtctgatgctgagccagcca
gtgtcttctcctttacccctcagcggtggcagattttccacgctgctccaaaacctcggg
ccagagaacgccatcaccctgctggtgtttgccgtcaccgaacacaagatcctggtgcac
tcgctacgaccggccgtactgaccagtgtcactgaagcgctggtgtctatgatcttcccg
ttccactggccgtgtccgtatattcctctgtgccccctggcgctggctgacgtgctgagt
gccccttgtccatttatcgtgggagtggactctcgctacttcgatctttatgacccccca
ccagatgtgagctgcgtcgacctggacacaaacaccatcttccacaatgaagataagcga
gcgctcacatggaagatcctgccaaagaaagcctgtaaaaacctgatgaatgtgctgagc
aatctctaccagcagctggtcgacggtcagcagcgacccgacgggctgctggagctgagc
atgagcgactcgtcagagctgagctgtgggaagagtcttcacacgctggagctggagatc
caggaggccttcctgcgcttcatggcagccattttgaagggctaccggtccttcttacga
cccatcacccaggcgccgtcggagaaagccacggacgctagttcgctctttgacctacaa
ggcttcttgaaaagccgcgaccgctctcaccagaagttctactcgctgatgaccaagacc
cagatgttcatccgctttatcgaggagtgttcgttcgtcagtgacaaagacgccagcctg
gcgttcttcgacgactgcgtggacaaactgtacaactcagagcggagtgcagacaaagga
gggaaggtggacggtgagaagccggaggagtccaggctgatggagtttgacgagtcccag
cgcagtgagcacacggtcttcatcacacctccagagctgccccccctgcccgagggggag
gagcacccgctctgctacaggtacgatggtttccccgtgttgagtcttgacctgtttgac
cccgtggagggtctgcggaccccctcctcccgcctcgctgccagacacagctgccccacc
agccctgcccccatgtttagacgcaccaagcaggagatcaaattgtcccagaagattgca
aagaaatactcctccattcctcagctgtggtccaagtgtctgctccgtcactgctacggc
ctgtggttcatctgtctgccggcgtacgtaaaggtgtgccactccaaggtgagggccctg
cgtacggcctacgacgtcctcaggaagatgcaggccaagaagctgcagccccctgacgag
gtgtgctaccgggtgctgatgcagctctgtggacagtatggtcagcctgtcctggcagtc
agggtcctctttgagatgaagaaggctggaatccaccccaacgccatcacatacggctac
tacaacaaggcggtgttggagagcacgtggccctccagcaccagaggaggctacttcctg
tggatgaagctgagaaatgtcgttctcggcgtggcccagttcaaacaggctctgcgacgc
cagggccccgtcacccagagccctctgtcagatggcagcgacctggacgctgtgagtcac
ggcagcctggagagctctgccgacactaacccggccgagcagggcccctacgccactgac
tccgtcaaagtagaccccactgacgatagatctagcacagttggccgtgggggcggcagc
gtgggcgccagggccccggtggcccactcccactgggggggctctgagctcagagaagcc
accctccacccaggagatcagtcagatctgggttataactcgctgtccaaggaggaggtt
cggagaggagaccccagctcccaggacgctgcccctgacaaggaggaaaagaaggagagc
gactgcagctccttatctgagacggagagcgccaaaggaagcaaagactgcctccctcag
ctggacgtggaggtccactcctccttcaggccgcggggcatcgtccgcagcagctgtgca
tttgacgactcgtcctgtaaacccaagagctccgtgagcacaggacacgtcgcaggtctc
ctcttcacctcctccctggatgagatctgcgaggtccagaccaacagtctgctcaggaga
cacaggagcgctctggaagaggtggtgggcagcgccagcagcggctcggccctcgagtgg
cagggggtcaggggtcgccgtctgagtggagacacggtgggcagcagcggcagcggcacc
accgtcctcggcctggggatgagccaaggtgaaacagacccagataagatcgcaggtcac
ctgggcgccgacgccagaattctctccgctgccaacttcagtaagagcaagaggccccgt
tcgctggctttcggcggatcagagggcgatgctgctaagacgagcgccgccagacgtctg
gatcacagggaggaggaagaggagatggagggacaggactccagtgatgaggacagaagt
aacacagaggccatctttgatctggaggatctggatttagacaagcctgcgaccgggcct
ggcgtcaacgctcatcaaggccacaaacacaagaaactcgtggaacgcagcgccagctac
ggtgccatgagccccggggcgtccagaggagctgtgaaacgcacaggcatcgagatgggc
tacgaccctctgtcgctgctggctgcagagtcacagaccgagcagcagggtgaggatcgg
tacccagaaggtgacgaggggagcacgccgagcgccggcaggcacctggccagggagata
gagctctacatgaaccacatgggcagcccgctgaccagccgcacgcccagtctggacctg
caggacccagccagccccctcctcctccatccctcttccatctgcggcccccgcagagcc
agcctgccccacagctcctccctcaggaccgctggagtaccgcgctcctgcacgtaccac
ccgccctcgccctcccatcccatctcacgccaacgtctgtggtcgtcgcccccgcgtcgc
agctcgagcaccacccccagccccagccctcgacccagcccctacagagagcgggcggac
aggatgagcctggcgtcgccttcaccgtcctcctcgtccttcgctctggacactctgctc
acaccaacgctggatgtcttcaaaaccagtgtggtctctgctgggaagggggtggcagag
aaggcgagccgctggtactctcgtctggccacgtacaccacacccaccaaggacggtcac
ggtgaccgtctgagtgtcggggatccagacggctcgtccctgctggacgaggaggacggg
ggggggtcggagagctcagtggtttctccacagaggaacggcccccgacgcagccgactg
gacagcccctctgcgggctgcagccaaatgagacccacgtctctgctgcccggatgcgtc
ctctcgccccccggcttctctctgccggacaagtcggacgccggctcctcccactacacc
agcaacaccagcatcttcaacaactacgccatggagctgctgatctccagctgttctcgc
tgtaagacgtgcgactgtctggtgtacgacgaggagatcatggccggctggacggcggac
gactccaacctgaacaccacctgccccttctgcggaaaccccttcctgccttttctcaac
gtggagatcagggacatgaggggacccggcagacttttcctgaagggcagtccgtcagtg
gacgaggcaatgacgtcatcgtactccgcctcaacgggtttcgacacggggacgtccacc
ttgtccacaccctgtcccgcaacagctgtctcccctctgtcccccgtggtagctgtccag
gagtcctcgggagatggaaggaccagagcaaccagggctcaaggtatcaacatcccctca
ggatgccggcaggggatggcgtcccctggagcgcccatggcccgtagcgtcagcaccttt
aatcctctggaggaagcatcccgacccagccgctgcgtgccgacgtcgggcagcctgccc
agccgtctgaatgaagcatcggatccactgaacatggagtggcgcctccacaacccggag
cccgtgaccgttccctacctgagcccgctggtgctgtggaaggagctggagagtctgctg
gagaacgagggcgacccggtgatcaccgaggccgacatggtggaccatcatcccatcatc
tactggaacctggtgtggtacttcagacgactggacctgcccagcaacctgcccggactc
atcctcacgtccgagcactgcaacagagactctcaggtccctcgtcactggatgtccgag
gacagtaaacacgtgttgatccagatcctgtgggacaacctgaagctgcaccaggatccc
atccagcccctctacatcgtctggaacaccttcaggcttaattgtactctgttgttagag
aatgtcggctaccctctgtcccggccggtcccggaggaggagaagccgttcagcgaggag
ctgctgcagagcgtggtgaagagcatccagaggaacgacatcagccggccgatggctcag
ctgctgcagctgctggctcagacgctcggggccaagaggcaaaggagtttgtacagagac
gtcctcttcctctccctcgtggctctgggcaaagacaacatcgacatcgacgccttcgat
cgtgagtacaagttggcgtacgaccgcctcgtgccgagcttggtgaagctgacccacaac
tgtgaccgtcctcccagcacgggggtcatggagtgtcgccggacgttcggcgagccctac
ctgtga
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