Hippoglossus stenolepis (Pacific halibut): 118114986
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Entry
118114986 CDS
T08308
Symbol
usp39
Name
(RefSeq) U4/U6.U5 tri-snRNP-associated protein 2
KO
K12847
U4/U6.U5 tri-snRNP-associated protein 2
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118114986 (usp39)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hsp03041
]
118114986 (usp39)
Spliceosome [BR:
hsp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP specific factors
118114986 (usp39)
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
UCH
zf-UBP
UCH_1
Spt5_N
zf-UBP_var
Motif
Other DBs
NCBI-GeneID:
118114986
NCBI-ProteinID:
XP_035021696
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Position
9:complement(16299016..16305612)
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AA seq
505 aa
AA seq
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MMVSLKREREAEVDDDDEEDDSDDGAAVKIGRTRVAEDRRSRHCPYLDTINRSVLDFDFE
KLCSISLSHINVYACLICGKYFQGRGLKSHAYTHSVQFTHHVFLNLHTLKFYCLPDNYEI
IDSSLEDITYVLKPTFTKQHISGLDKQGKLYRAYDGTTYLPGIVGLNNIKANDYANVVLQ
AFSNVPPLRNYFLEEENYKGIRRPPGDIMFLLVQRFGELMRKLWNPRNFKAHVSPHEMLQ
AVVLCSKKNFQITKQGDAVDFMTWFLNALHGALGGTKKKPSIITQAFQGSMRIFSKKLPH
PDLPPEEKEALLVTEEYQEQMSESTFLFLTLDLPTAPLYKDEKEQLIIPQVPLFHILGKF
TGSTEKEYKTYKENFLKRFQLTKLPPYLIFCIKRFTKNNFFVEKNPTIVNFPITNVDLRE
YLTEEAQVTEKCTTYDLVANVVHDGKPTEGAYRIHVLHHGTGKWYEMQDLQVIDILPQMI
TLSEAYIQIWKRQECADDTNNHKEA
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgatggtttctctgaaacgagaaagagaagctgaggtggacgacgacgacgaagaagac
gacagcgatgacggagcggcagttaaaataggccgaacacgtgtagcagaagaccggaga
agtcgccactgcccgtatctcgacaccataaacaggagcgtgttggactttgactttgag
aagctctgctccatctctctgtcccacatcaacgtctacgcctgcctcatatgtgggaaa
tacttccagggtagaggactgaagtcccatgcctacactcacagcgtccagtttacccac
catgtgttcctcaatctgcacacactcaagttttactgtctgccagacaactatgagatc
attgactcttcactggaggacatcacttatgtgctcaagcctactttcaccaagcagcac
atttcaggactggacaagcaaggaaaactgtaccgagcctatgatggtacgacgtaccta
ccaggcattgttgggctcaacaacatcaaagctaatgactatgccaacgtggtgttacag
gctttttccaacgttccacctttgcgaaactacttcctggaggaggagaactacaaagga
atccgcaggccaccgggggacatcatgttcctcttggtgcagaggttcggggagctgatg
cgcaaactttggaatccgagaaacttcaaggcccacgtgtctccccatgagatgctgcag
gccgtggtgctgtgcagcaagaagaacttccaaattaccaagcaaggagatgctgtggac
tttatgacgtggttcttgaatgctctgcatggggctcttggaggcacaaagaaaaagcca
tcaatcattacgcaagcatttcaaggctccatgaggatcttctccaagaaacttccacac
ccagatttaccacccgaggagaaagaggcattacttgtgacggaggaataccaggaacag
atgtctgagtccaccttcctgtttctgacacttgacctcccaacagctccactgtacaag
gatgagaaagagcagcttatcatcccccaggtccccctcttccacatcttgggcaagttc
actggcagcacagagaaggaatacaaaacctacaaagagaattttctcaaaaggttccag
ttgaccaaacttcctccgtacctcattttctgcatcaaaagattcaccaagaacaacttc
tttgtggaaaagaacccaacaattgtcaacttccccatcacgaatgtagaccttcgtgag
tacttgacagaagaagctcaagttacagagaagtgcacaacttatgacctcgtcgccaac
gtagtgcatgatgggaaacccactgagggagcctacagaatacatgttctgcatcatgga
actgggaagtggtacgagatgcaggaccttcaggtgatcgacattctcccccagatgatc
acgttgtcggaagcctacatccagatctggaagagacaagagtgtgccgatgacacaaac
aaccacaaagaggcgtaa
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