Hippoglossus stenolepis (Pacific halibut): 118115021
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Entry
118115021 CDS
T08308
Symbol
lrp13
Name
(RefSeq) low-density lipoprotein receptor-related protein 2 isoform X1
KO
K20051
low-density lipoprotein receptor-related protein 4
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hsp04131
]
118115021 (lrp13)
Membrane trafficking [BR:
hsp04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
118115021 (lrp13)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_a
Ldl_recept_b
cEGF
FXa_inhibition
EGF_CA
EGF
EGF_MSP1_1
Vgb_lyase
EGF_LRP2
hEGF
Motif
Other DBs
NCBI-GeneID:
118115021
NCBI-ProteinID:
XP_035021785
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All DBs
Position
9:5524489..5536135
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AA seq
1408 aa
AA seq
DB search
MAGSSSPSPHSGGPSVCIGLTWHQYKMQPFHSQPHLAWSVSSQVMAVFLFLCALLLLFSR
SLQGEPVVSAGSSHLKCNLGSKLCKDGSECILHRTVCDGEPDCRDGSDEEDCPTECNRDQ
FRCAHGKKCIEKDQVCDGVPQCQDRSDELQCMKRMDGCVHHCDNKNRCLPANFLCDGERD
CLDGTDEANCEDLEEEEYKVEERTRVPSKPHLPVATAIVKCSLSARPCKNNAGCVLYNHI
CDGEADCSDGSDEEECVSTCETNQFQCAHGKKCIEQSQVCDGAPQCQDRSDELDCTMHMD
GCAHQCDDKSRCIPNNFICDGEKDCLDGSDEANCAEESCSATELKCTSGQCVSATMRCDG
HPDCWDRSDEEGCANALVCTTKHRCPVSKECLVQEWICDGYQDCKDGTDEKDCPVAPLTC
GEFQWSCKSKTMCVPMAWRCDGMKDCDDGSDETKCEMVPCLPHQFQCGSRECLEPSLVCN
GMTNCADGSDEGGSCQINCAEKDERRCSQSCYNTPQGPRCSCSAGYRLMEDGMTCADVDE
CEGLSSGVCSQLCINTPGSYRCDCHPGYIMEADGHHCKITGEPYLLSSVQTDLIVFGLRS
GSMDMLSSTAKKAILSVDYDWRGQRVFWVSLDTGSIRWSSMDQKNTGTLIKGVRADSVAV
DWLGRNLYWIDGVNSKIVAIRLATGTAKSQDQTVILDEDLDQPRSLALLPQKGLMFWTEI
GTVVKIERAGMDGSERVAVVNSSLGWPGGVAVDTSSDRVYWTDERLGAIGSATFDGDDIR
ILQMKETSSPFSLAVFNDMLYWSDAKKRVVQVAHKISGKRHQVLLKRQRQPFGVKIIHPW
LQMGNQSPCEKMACSHMCVFARGPKAVCKCPSGLVLAEDRLTCSGLVNSAFLLMLSPSTV
TQIYLQSRHTAVELKGWPEHLALQLPSVNEAVIMDYNPRDLTLFLTDDGTNSLSAFKLKD
SDLVSQGQLLKLLGNTITAMALDWVTLNIYWSSNKQPRLQVTSIMGAHTAVLIKEGIERI
GSIALHPPTGRVCFTNLGVQGEGAAATVECANMAGAGQKVVWKDAVQPTSLVFSSNGDAI
YWADSALGSIGSVQLDGSEYREVKVGDGLAAVALSDDTLLWMTVNDKTRLWYQDEQQPSK
LWFEVGTQVVSMKAFSKSSQSGSNKCTENNGNCQHLCLATSEGRTCKCGHDHVPVNDTHC
SLAQHCPAGRKPCLDRLSCVPVEKFCNGHVDCSDHSDENCVNLMLWSGVKTSAPIQPHSA
PPPPSPYPSLTETIDLYTTMNVSSQLVNLDAQQCSQRHCSSNGRCVKNDGDTTCVCSLGY
SGDSCQDHLLKTMQGPIIYGAAGLCVGVVVIAVIAVLVKRKKRANMRGASSAAVKETCMT
DMENKAETTPSTKSAVQEKPEDVAPSVD
NT seq
4227 nt
NT seq
+upstream
nt +downstream
nt
atggcaggaagcagtagcccctcccctcactcaggtggcccatcagtttgtattggcctc
acctggcaccagtataaaatgcagccctttcacagtcagccacacttggcctggtctgtg
tcctctcaagtgatggctgtatttctgtttctttgtgctcttttattgctgttctcaagg
tccttgcaaggtgagccagttgtttcagctggaagcagtcatctgaagtgcaacctgggc
tccaaactgtgcaaggacggctccgagtgtatcctccatcgcactgtgtgtgacggagag
cctgactgcagggatggttcagatgaagaggactgtccaactgaatgcaacagagatcag
tttcggtgtgcccatgggaagaagtgtatagaaaaggaccaggtttgcgatggcgttcct
cagtgtcaggaccgttctgatgaactccagtgtatgaagcgtatggacggctgtgttcac
cactgtgacaacaagaaccgctgcttgcctgcaaacttcctctgtgatggagagagggac
tgtttagatggcacagatgaggcaaactgtgaggaccttgaggaagaagagtataaagtg
gaagaaaggaccagggtgccctctaagccccatttacctgtggctacagccattgtcaag
tgttctttgagtgccagaccctgcaagaacaatgctgggtgtgtcctgtacaaccatatt
tgcgatggcgaggcagactgcagcgacggctcagatgaggaagaatgtgtatcaacatgt
gaaacaaatcagttccagtgtgcccatggaaagaagtgcattgagcagagccaggtgtgt
gatggtgcgcctcagtgtcaggaccgctcagatgagctggactgtaccatgcacatggac
ggctgtgctcaccagtgtgatgacaagagccgctgcattcccaacaacttcatctgcgac
ggggagaaggactgcttagatggcagcgacgaggccaactgtgctgaagagagctgcagt
gccactgaattgaagtgcaccagtggccagtgtgtgtctgccacaatgcgctgtgatgga
cacccagactgctgggaccgctcggatgaagagggctgcgccaatgcactggtctgcacc
accaaacaccgctgccccgtgagcaaggagtgtctggtgcaggagtggatctgtgacgga
tatcaggactgcaaagatggcactgatgagaaggattgtcctgttgctccactgacctgt
ggtgagttccagtggtcttgtaaatccaagaccatgtgtgttcctatggcctggagatgt
gatggcatgaaggactgtgatgatggcagtgatgagactaaatgtgagatggtgccgtgt
cttcctcaccagttccagtgtggaagtcgtgagtgcctggagccgtccctggtgtgtaac
ggcatgaccaactgtgcagatggctcagacgaaggaggcagctgccagataaactgtgca
gagaaagatgagaggcgctgctcccagagctgctacaacacgccgcagggaccgcgttgt
agctgttcagcaggatacaggctcatggaggatgggatgacgtgtgctgatgttgatgag
tgtgaaggcctgagctcaggtgtgtgcagtcagctgtgcatcaacactcctggctcctac
agatgtgactgtcacccaggctacataatggaggcagatggacaccactgcaagatcaca
ggtgaaccctacctgttgtcgtcggtccagacagacctgattgtgtttggactgcgcagt
ggcagcatggatatgttgtcctccactgccaagaaggccatcctgtctgtggattacgac
tggagggggcagagggtcttctgggtcagtctggacactgggagcatcagatggtcctcg
atggaccagaaaaacacagggacgctgattaaaggcgtgcgagctgattctgtagctgtg
gactggctcggcaggaacttgtactggattgacggggtgaacagtaaaattgttgccatc
agacttgccacaggcactgcaaaatcacaggaccagactgtcatcctggatgaagacctg
gatcagccccgctctctggccctgctgccacaaaaagggctgatgttctggacagagatc
ggtactgtagtgaagatcgagcgggccgggatggatggctccgagagggtggcagtggtg
aactccagtcttggctggcctggtggtgtggctgtggacaccagctctgacagagtctat
tggacggatgaaagacttggagcaattggatctgcaacgtttgatggagatgatatccgg
atcttgcagatgaaagagacctccagcccattctcactggcagtgttcaatgacatgctc
tactggtctgatgccaaaaagcgagttgtccaggttgctcataaaatctctggcaaacgc
catcaggttctcctgaaaagacaaagacagccttttggcgtgaagattatccacccatgg
ctccagatgggaaaccagagcccctgtgagaagatggcttgttcccacatgtgtgtgttt
gcccggggccccaaagctgtgtgcaagtgtccctctggtcttgtactggctgaggatagg
ctgacctgttccggtctggtcaactctgcgttcctgctgatgctgtctccatccactgtc
actcagatctacctgcagtcccgacacacagcagtagagctgaagggctggccagaacat
ctggccctgcagctgcccagtgtcaatgaagccgtcatcatggactacaacccacgtgac
ctcaccctattcttgaccgatgatggcacaaattcactcagcgccttcaaactgaaggac
tcggacttggtgtcccagggccagctcctcaaactcctgggtaacaccatcactgctatg
gccctggactgggtgacgcttaacatctactggagcagcaataaacagccccgcctgcaa
gtcacctccatcatgggagcacacactgctgttctcatcaaggagggtattgaaagaatc
ggatccatcgctctccatcctccgactgggagagtttgtttcaccaacctgggtgtgcaa
ggtgaaggtgctgcggctactgtagagtgtgcaaacatggccggtgctgggcaaaaggtg
gtgtggaaggatgctgtccagcccacatccttggtcttctccagtaatggggatgctatt
tactgggctgactctgctttaggaagcatcggctctgtccagctcgatggatctgaatac
agagaggtgaaggttggtgatggcctggctgctgtggctctgagtgatgatacgctgctc
tggatgactgtcaatgataagaccaggctctggtaccaagacgagcagcagccgagcaag
ttgtggtttgaagttggcacacaagtggtcagcatgaaggccttctccaagtcaagtcag
tctggttctaacaagtgcacagagaacaacggcaactgccagcatttatgcctcgccacc
tcagaaggccggacatgcaagtgtggccatgatcacgttcctgtgaatgacacccactgc
agcctggcgcagcactgcccagccggcaggaagccatgtctggatcgactctcgtgcgtt
cctgttgagaagttttgtaacgggcatgtggactgctccgaccattcagatgagaactgt
gttaatctaatgctgtggtcgggagtcaaaacctctgctcccatccagcctcacagcgcc
cctcctcccccctccccttacccatctctgactgaaaccattgacctgtacaccaccatg
aatgtcagcagccagctcgtgaacctggatgcccagcagtgcagccagagacactgcagt
agcaatgggcgctgtgtgaaaaacgatggagacaccacatgtgtgtgttcgctgggctat
agtggtgattcctgtcaggaccatctcctgaagaccatgcagggtcccatcatctatggc
gctgcagggctctgtgtgggagtggtggtcattgctgtaatcgcagtgctggtcaagagg
aagaagagggccaacatgaggggagctagctcagcagctgtgaaggaaacgtgtatgaca
gacatggagaacaaagctgagaccacccctagtacaaaatctgcagtccaagagaagcca
gaggacgtggcaccatctgttgactga
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integrated database retrieval system
