Hippoglossus stenolepis (Pacific halibut): 118115224
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Entry
118115224 CDS
T08308
Symbol
tmc1
Name
(RefSeq) transmembrane channel-like protein 1 isoform X1
KO
K21988
transmembrane channel-like protein
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
hsp02000
]
118115224 (tmc1)
03037 Cilium and associated proteins [BR:
hsp03037
]
118115224 (tmc1)
Transporters [BR:
hsp02000
]
Other transporters
Pores ion channels [TC:
1
]
118115224 (tmc1)
Cilium and associated proteins [BR:
hsp03037
]
Other cilia and associated proteins
Stereociliary proteins
118115224 (tmc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TMC
Pro-rich
COX16
Na_K-ATPase
AcrVA2-like
Motif
Other DBs
NCBI-GeneID:
118115224
NCBI-ProteinID:
XP_035022133
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All DBs
Position
9:complement(10185341..10194412)
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AA seq
969 aa
AA seq
DB search
MPRDGLITAENNSDIELEFKGDEDEESTFQEELERGRHRGRRRDGDREKKKRGNRRRKGA
SKETVEEEEESQNRLEKRERRRKRAKRHQEAKGRERDEEEQAKIISGKKAKTRKNVKNEK
TRKVEEKEEEEGEAEERNAKGKRKHGGAKHEEKKDDGGKHTVKEKAKEDKKKKHKKVVET
SSEQEMSEEANEDNEEEDVEEKELRPESLSPEELEKLKEAVDERKKLIQSLRGKPWPMKK
KLVTLRESQEFVEKYEGALGKGKGRRLYAYKVMMTKKWMKFQRDFENFKTVCIPWEMKIK
EIESHFGSSVASYFIFLRWMYGINMILFGLTFGLVMVPEALMGRPYGSISRKTVPRAEEA
SAMDFAVLWDCGGYAQYSVLFYGYYNSQRAIGWLKFRMPLSYFLVGVGTVAYSYMVVIRT
MARNSNESGVGDDNSFNFSWKMFTSWDYLIGNPETADNKFASITTSFKEAILEEQESHKD
DNIHLTRFLRVLANFLVLCCLAGSGYLIYFVVRRSQKFALDGLDNHTWWERNEVNMVMSL
LGMFCPMLFDVISALENYHPRVALQWQLGRIFALFLGNLYTFIIALMDEINLKREEEMII
KYNISMWEASFYNSSVSGNSTAPPIIIQPADVPRGPCWETMVGQEFVRLIISDTMTTYIT
LLIGDFLRAVLVRFLNYCWCWDLEAGFPSYSEFDVSGNVLSLIFNQGMIWMGAFYAPCLP
ALNVLRLHVSMYLQCWAVMCCNVPQERVFKASGSNNFYMAMLLVILFLSTLPAIYTIVTI
PPSFDCGPFSGKKRMFDVIAETLESDFPAWFGKVFSSASNPGLVLPFILLMVLAIYYLQS
TSKSYKEVNVELKKKLQAQNEENKKKNKRAALKAQIDLEEARNATSQTAQQQQETDGDEQ
QGSSQRPHHGKNGRNPPPPVGDQERQPLATRAPVPRPYHHDNHGTPGYLPGFSQQSEPRV
YRVPSLQRH
NT seq
2910 nt
NT seq
+upstream
nt +downstream
nt
atgcctcgagacggtctgatcaccgctgagaacaacagtgacattgaactggagtttaaa
ggtgacgaggatgaagagtccacttttcaagaggagctggagaggggaagacacagaggg
aggagaagggatggtgacagagagaaaaagaagagagggaataggaggaggaaaggagca
tctaaagaaacggtagaagaggaagaggaatcccagaacaggcttgagaaaagagaaagg
aggagaaagagagcaaaacgccatcaagaagcaaaaggacgagagagggatgaggaggag
caggccaaaataataagtggtaagaaggcaaaaacaaggaagaatgtcaaaaatgagaaa
acaagaaaagtggaggaaaaggaggaggaggaaggagaggctgaagaaagaaatgcaaag
ggaaaaaggaagcatggaggtgccaaacatgaagagaaaaaagacgatggaggtaaacac
acagtaaaggagaaagcaaaggaagataagaagaaaaagcacaagaaagtagttgaaaca
agttcagagcaggagatgagtgaggaagccaatgaagacaatgaggaagaggatgttgag
gagaaggagttgaggccagagtctctgtcgccggaggagctggagaaactgaaggaggca
gtggacgagaggaagaaactgatccaaagtctgagggggaaaccctggccaatgaaaaag
aaacttgtcactttacgagagtctcaggagtttgtggagaaatatgagggcgctctgggg
aaagggaaaggcagacggctctatgcttacaaggtcatgatgaccaagaaatggatgaag
tttcaacgggactttgaaaacttcaaaactgtttgcattccatgggagatgaaaataaag
gagattgaaagtcattttggctcctcagttgcttcttactttatcttcctgaggtggatg
tatggcatcaacatgatcctgtttggtctgacctttggcctcgtgatggttccagaggca
ttgatgggaaggccctatggcagcatctcaagaaaaactgtccccagggccgaggaggcc
agcgccatggactttgctgtcttatgggactgtgggggttatgctcagtattccgtcctt
ttctatggatactacaacagccagcgtgccattggctggcttaagttccgtatgcctctg
tcgtacttcctggtcggtgtgggaactgtggcctacagctacatggtggtcataagaacg
atggcccgtaattccaatgagtcgggggttggagatgataacagctttaatttcagctgg
aagatgttcaccagctgggactacctgataggaaaccctgaaactgcagacaacaagttt
gcctccatcaccaccagtttcaaggaggcgatcttagaggaacaggagagccacaaggac
gacaacatccatctgacccgttttctgcgggtgctggccaacttcctggtcttgtgctgt
ttggcaggaagtggatacctcatctactttgtagtgcgtcgctctcagaagtttgcccta
gacggactggataatcacacctggtgggaaaggaacgaggtaaacatggtcatgtcactg
ctggggatgttctgccccatgctgtttgacgtcatcagcgccctggagaactaccacccg
cgcgtcgccctgcagtggcagctgggtcgcatctttgccctcttcctgggaaatctctac
accttcatcatcgcattgatggacgagatcaacctgaaaagggaggaggaaatgatcata
aagtataatataagcatgtgggaagccagtttttacaacagctccgtatcaggaaacagc
actgctcctcccatcattatccaacctgctgacgtgcccagagggccctgctgggagacc
atggtggggcaggagtttgtccggctgatcatatctgataccatgacaacctacatcacg
ctgctgattggggatttcctgagagccgtgctcgttcgttttctcaactactgctggtgt
tgggacctggaggctggatttccttcctactcggagtttgatgtcagtgggaacgtcctg
agcctgatcttcaatcaaggaatgatatggatgggcgcgttctatgcaccctgtctcccc
gccctgaacgtcctccggctccatgtgtccatgtacctgcagtgctgggcggtgatgtgc
tgcaacgtgccacaggaaagagtcttcaaggcctccggatccaacaacttttacatggcc
atgctgctggtcatcctcttcctgtccactctgcccgccatttacaccatcgtcaccatt
cctccttcctttgactgtggacccttcagtgggaaaaaacgtatgtttgatgtcatcgct
gagacgctggagtccgacttccctgcctggtttggtaaagtgttcagctctgcttctaac
cccggactggtgctgcccttcatactgctcatggtactagccatctattacttgcaatcc
acatccaagagctacaaagaagttaatgtggaactgaagaaaaaactacaagcgcaaaat
gaggaaaacaagaagaagaacaaacgagcagcgctgaaggcacaaatagatctggaggag
gccagaaatgcaacgtcacagactgcacagcaacaacaagagacagatggagacgaacaa
caaggcagcagtcagaggcctcatcatggcaagaacggacgcaaccctccgcctcctgtt
ggagaccaagaacgccaacctctggccaccagggctcccgtccccaggccctatcaccac
gacaaccacggcactcccgggtacctgcctgggttctctcagcaaagtgaacccagggtg
tacagggtgccgagcctgcagagacactga
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