Hippoglossus stenolepis (Pacific halibut): 118115325
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Entry
118115325 CDS
T08308
Symbol
cacna1ba
Name
(RefSeq) calcium channel, voltage-dependent, N type, alpha 1B subunit, a
KO
K04849
voltage-dependent calcium channel N type alpha-1B
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04010
MAPK signaling pathway
hsp04020
Calcium signaling pathway
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09130 Environmental Information Processing
09132 Signal transduction
04010 MAPK signaling pathway
118115325 (cacna1ba)
04020 Calcium signaling pathway
118115325 (cacna1ba)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
hsp04040
]
118115325 (cacna1ba)
Ion channels [BR:
hsp04040
]
Voltage-gated cation channels
Calcium channel, voltage-gated (Cav)
118115325 (cacna1ba)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ion_trans
GPHH
Ca_chan_IQ
PKD_channel
Phage_TAC_15
Motif
Other DBs
NCBI-GeneID:
118115325
NCBI-ProteinID:
XP_047197362
LinkDB
All DBs
Position
9:2254756..2345514
Genome browser
AA seq
2193 aa
AA seq
DB search
MKAMVPLLQIGLLLFFAILMFAIIGLDFYMGKFHRTCFRIDTGEQTGEFPCGLEAPARTC
GNGTSCMEYWIGPNYGITNFDNILFAILTVFQCITMEGWVDILYNANDASGNTWNWLYFI
PLIIIGSFFMLNLVLGVLSGEFAKERARVEKRQDFLKLRRQQQRERELIGYLEWICKAEE
VMLAEEDKNAEEKSLDGAWYKRKHNNSVLKRTKKSKNDLINAEEGEDHLTDISSAAPPGS
PFTRASVKSKNENTSYFKRKVKRIRFTIRRLVKSQSFYWTVLCLVGLNTLCVAIVHYDQP
DWLTYALYLAEFVFLGLFLAEMSMKMYGLGPQNYFHSSFNCFDFGVIIGSIFEVIWAAIK
PGASFGISVLRALRLLRIFKVTKYWNSLRNLVVSLLNSMKSIISLLFLLFLFIVVFALLG
MQLFGGQFNFEDETPTTNFDTFPAAILTVFQILTGEDWNAVMYHGIESQGGVHRGMFSSI
YFIILTLFGNYTLLNVFLAIAVDNLANAQELTKDEEEQEEAINKKLALQKAKEVKEVSPM
SAANISVTAFLTRTRGNAHSSSSSICSVNSLSYVCTPVHHFLSKEQQKSVKTMSVWEQRT
NQLRRQNRPGCEALYNELEPEERLRLSSALHIRPDMKTHHDRPLLVEPHDGPLLGDHQHH
HHKPSMLEEAETADPLPHQNRRHHRHRDRDRIRTKEETNDNGDTGGKQHVHHSRSKDHDG
SRGKEGKTERSHSREGGRKHHHQSSVEDSGGGGVTTEREHRHHHSHRQARGGNGTVSNGG
RGERRSRHKEGRSSNRDGDRNSRGESGGNGEKRRHRTHGSRGQSTAEGEDSNDKEKTHGH
RFGDSEGESLAISPQQGSGGGDWPPDRPEDSDNQRNVRRTDQTSSHNPPVKVTCPPGETT
LIQMNSIDCETMPMNEKTLEDLGQSGPKPILPYSSMFMFGRTNPVRRLCHYIVTLRYFEM
SILVVITMSSIALAAEDPVWTNAPRNNVLKYLDYVFTGVFTFEMVIKMVDLGLLLHPGSY
FRDLWNILDFIVVSGALVAFAYSSFMGSQQGVTRGTKGKDISTIKSLRVLRVLRPLKTIK
RLPKLKAVFDCVVNSLKNVLNILIVYMLFMFIFAVIAVQLFKGKFFYCTDESKGLEKDCK
GQFLDYDKDEVAAMPREWKKYEFHYDNVLWAFLTLFTVSTGEGWPTVLKHSVDATFEDQG
PSPGYRIEMSIFYVVYFVVFPFFFVNIFVALIIITFQEQGDKALSECSLEKNERACIDFA
INAKPLTRYMPMNTQSFQYRMWKFVVSPPFEYSIMIMIALNTVVLMMKFHGAPDFYEAML
KNLNIVFTTLFSLECILKIIAFGPLNYLKDAWNVFDFVTVLGSITDILVTEINTTDRLLN
LSFLRLFRAARLIKLLRQGYTIRILLWTFVQSFKALPYVCLLIAMLFFIYAIIGMQVFGN
IDLNEDTAINHHNNFRTFLQALMLLFRSATGEAWQEIMLSCLSQRACDERSGNQGKECGS
DFAYFYFVSFIFLCSFLMLNLFVAVIMDNFEYLTRDSSILGPHHLDEFIRVWAEYDPAAC
GRISYKDMYNLLRVISPPLGLGKNCPNRVAYKRLVKMNMPIADDNSVHFTSTLMALIRTA
LDIKLASGMVGQRLSDAELKKELSTVWSNLSQKTMNLLVTPHKPNELTVGKVYAALMIFD
YYKQNRARRLQLQQQQQNASGSQCKVGALFKPLLPLTHMQEKDLPMMFNSVEPPSILLPQ
QKSHAKSQPQTRPSSNSLNNGVTQPGHDHNIKVSASWVMEKPKEGPRAKSKRSMSRGPSE
DTPDTAIVQESVEMRKMETSVSSIIPVPGTGLENQGRAASMPRLSAELQWGPSHHTPGVH
LASVPDASPMKRSASTAAPQRPQEVNLRDYTLEKPSQDRPHHHHHHRCHHRRDRDKDRER
EKRQRSLDTPLGGQPPGSAEEPASDPAASRERAHDRGRSHERKHHHSSVDKQRYYSCDRF
CSREHCHSKSATASCAASPCEGQETSNKQGSGWVKGSPVALSSSSSTPSRGRRQLPQTPL
TPRPGVAYKTANSSPVHFVSSQASVSPGRLSRGLSEHNAIRHSSSLHIPCPVTRISSEPF
LGRGHGDALGSPYGSLRDQLDVFQDVASFSPSPRTGRSSWTALPRMMGALPPAPQQNLGV
PNGYHFSFGGNTSPGSGVRAPRYYQEAEEDEWC
NT seq
6582 nt
NT seq
+upstream
nt +downstream
nt
atgaaagccatggtacctctgctgcagattggcctgctgctcttctttgccattctcatg
ttcgccatcatcggccttgacttctacatgggcaagttccatcgcacctgcttcaggata
gacacaggtgagcagacaggtgagttcccctgtggcctggaggctccagcgaggacctgt
ggaaacggcacctcctgtatggagtactggatcggacccaactatggcatcaccaacttt
gacaacatcctctttgctattctcaccgttttccagtgcatcaccatggagggatgggtg
gacatcctctacaacgccaatgatgcctcagggaacacatggaactggctgtacttcatc
ccactcatcatcatcggttccttcttcatgctcaacctggtgctcggcgtgctgtcaggg
gagtttgccaaagaaagagcgagggtggagaagaggcaagatttcctgaagctccgcaga
caacagcaaagagagagagagttgattggatatctggagtggatctgcaaagcagaggag
gtgatgctggctgaggaagacaaaaatgcagaggagaaatctttggatggagcttggtac
aaaagaaaacacaataactcagtgctgaagaggacaaagaagagtaagaatgacctcatc
aatgcagaggagggcgaggaccacctcactgacatctcatctgctgcccccccagggtca
ccgtttacccgggccagcgtgaagagcaagaacgagaacacatcctacttcaagaggaaa
gtgaagaggattcgcttcaccatccgtcgtctggtcaagtcccagagcttctactggact
gtgttgtgtctggttggcctcaacacgttgtgtgtagccattgtgcactacgaccaaccg
gactggctcacctatgccctatatctggcagagtttgtattcctgggcctgtttttggca
gagatgtccatgaaaatgtatggacttggaccccagaactacttccactcctcattcaac
tgttttgatttcggggtgatcatcggcagtatatttgaggtgatctgggctgccattaaa
cctggagcctcatttgggattagtgtcctgcgagctctgagactgctcaggatcttcaaa
gtcaccaagtactggaactccttaaggaacctggtggtatcgctgctcaactctatgaag
tccatcatcagcctgttgttcctcctcttcctcttcattgtggtcttcgctctgctcggg
atgcagctgtttggtggccagtttaattttgaagacgaaacaccgacaactaactttgac
acattcccagcagccattctcactgtgttccagatcctaactggggaagattggaatgcg
gtcatgtaccacgggatcgaatcacaggggggcgttcataggggaatgttctcctccatt
tacttcatcattctcacgctcttcggaaactacacacttctcaacgtcttcctggccatt
gctgttgataatcttgcaaatgcccaggagctcactaaggatgaagaggagcaagaggag
gccatcaataagaaactcgcactccagaaggccaaggaggtaaaggaggtcagccctatg
tcagctgctaacatttccgtcacagcttttctaacacgcactcgaggtaacgcgcattct
agcagctcatccatctgcagcgttaactcactgagttatgtctgcaccccagtccatcac
ttcctgagtaaggagcagcagaagtcggtgaagacgatgtcagtgtgggagcagaggacc
aaccagctgaggaggcagaaccggcctggttgtgaggccctgtacaatgagctggagcca
gaggagcgtctccggctgtcctcggcgctacacatccggcccgacatgaagacccaccac
gaccggccactgcttgttgagccccatgatgggcctttgctgggtgatcaccagcaccac
catcataagcccagcatgctagaagaggctgagactgcagaccctttgcctcaccagaat
cgccgtcatcatcgacacagagacagggaccggatcagaacgaaagaggagacaaatgat
aacggtgacactggtgggaagcaacacgtccatcacagtcgctctaaagaccacgacggt
agccggggcaaagagggaaagaccgagagatcccacagccgagagggaggcagaaagcat
caccatcagagctcggtggaggacagcggaggcggaggagtcacaactgagagagagcat
cgccatcatcattcacatcggcaggcccgagggggcaatgggacagtgagcaacggtggg
aggggagaaagaagatcccggcacaaagaagggcgttcttcaaacagggatggggatagg
aattccagaggagagagtggtggtaatggagagaagaggagacatcggactcatggatct
aggggccaatccacagctgagggagaggattccaacgacaaagagaagacccatggtcac
aggtttggggactcagagggggagtccctagccatctcaccccagcagggctctgggggg
ggcgactggcctcctgaccgaccagaggactcagacaaccagcggaatgtgagaaggacg
gaccaaacgtccagccacaatcctcctgtgaaggttacctgtccacctggagagaccacc
ctcatacaaatgaacagtattgactgtgagacgatgcccatgaatgagaagaccctggag
gatctaggtcaaagtggacccaaacccatcctgccttacagttccatgttcatgtttgga
cggaccaatccggtgaggcggttgtgtcactacattgtgactctgcgttattttgagatg
tcaatcctagttgtcattactatgagcagtatcgctctggcagcagaggaccctgtctgg
acaaatgcccctcgcaacaacgtgcttaaatatctggattatgtcttcactggtgttttc
acttttgaaatggtgatcaagatggtggacctgggcctactgcttcatcctggatcctac
ttcagagacctgtggaacattctggacttcatagtggtcagtggggcgctggtggctttt
gcatattcgagcttcatgggatcgcaacaaggtgtgaccagggggaccaaaggcaaagac
atcagcaccatcaagtcactgagggttctgcgagttctcagaccgctcaagaccatcaaa
cgtctgccgaaattaaaggcagtgttcgactgtgtggtcaactctctgaagaacgtgctg
aacatcctcatcgtctacatgctcttcatgttcatctttgccgttattgctgttcagctc
ttcaaagggaaattcttctactgcacagacgagtccaaggggctagagaaggactgcaaa
ggtcagttcttggactacgacaaagacgaggtagctgccatgcccagagagtggaaaaag
tacgagttccactatgacaatgtgctgtgggccttcctgaccctcttcaccgtgtctact
ggggagggctggccaactgtactaaagcactctgtggatgccacctttgaggaccagggc
cccagtccgggctaccggatagaaatgtccatcttttatgtggtctactttgtggtcttc
cctttcttcttcgtcaatatcttcgtcgctctgatcatcattacctttcaggagcaggga
gacaaggccttgtctgagtgcagcttggaaaagaatgagagggcatgcattgacttcgcc
attaacgccaaacctctgacgcgctacatgcccatgaacacgcagtccttccagtacagg
atgtggaagtttgtggtctcccctccgtttgagtattccatcatgatcatgattgctctc
aacactgtggtactcatgatgaagttccatggagctccagacttctatgaagccatgctg
aagaacctcaacatcgtcttcaccactctcttctctctggagtgtatcctcaagatcatc
gctttcggtccactgaactacctgaaggacgcctggaacgtgtttgactttgtgacagtg
ttgggcagcatcactgacatcctggtgactgaaatcaatacaacggacaggctgctgaac
ctgagcttcctgaggctgttccgagccgctcggctcatcaagctgctgaggcagggttac
accatccgcatcctgctgtggaccttcgttcagtccttcaaggccctgccatatgtttgc
ctgctgattgctatgctgttcttcatttatgccatcattgggatgcaggtgtttggcaac
attgacctgaatgaggacacagcaatcaatcaccacaacaacttccgcacgttccttcag
gctctcatgctgctgttcaggagtgcgactggtgaggcctggcaggaaatcatgttatcg
tgtttgagtcaacgagcctgtgatgagcgatcagggaaccaagggaaggagtgtggcagt
gattttgcctacttctactttgtctcctttatcttcctctgctccttcctgatgctgaat
ctatttgtggccgtcatcatggataactttgagtacctaaccagagattcctccatcctg
ggacctcatcacctcgatgagttcatccgggtttgggccgagtatgacccggctgcgtgt
ggacggatttcctataaggatatgtacaatttgttacgcgttatctcacccccccttggc
ttagggaagaactgccctaatagggtagcatacaagcgtctcgtcaagatgaacatgccc
atcgccgatgacaacagcgtacacttcacctccaccctgatggccctgattcgaaccgcc
ctggacatcaaactggcctcaggtatggtaggtcagcgcttgtctgatgctgagctgaag
aaggagttgtccactgtgtggtccaacctctcacaaaagaccatgaacctgctggtgacg
ccacataaacccaatgaactgacggtagggaaggtttatgccgccctgatgatcttcgac
tactacaaacagaacagagcgaggaggctgcagctgcagcagcagcaacagaacgcatcc
ggctcccagtgcaaggtcggggctctgtttaagccattgctgcctctgactcacatgcag
gagaaagacctgcctatgatgtttaacagtgtggagcctccaagcattcttctgccccag
cagaaatcccatgccaagtcgcagccacagaccagacctagctccaactccctcaacaat
ggagtcacgcagcctggtcacgatcacaacatcaaggtatcagcttcctgggtgatggag
aaacccaaggaggggccccgagctaagagtaaaagaagcatgtccaggggcccatcagag
gatacaccagacactgccatcgttcaggagtcagtggagatgaggaagatggagaccagt
gtcagcagtataatcccagtccctggcacaggtctggagaaccagggcagagctgcttct
atgcctcgactcagtgctgagctgcagtggggcccctcacaccacactccgggggtccat
cttgcctctgtccctgatgccagccctatgaagcgctcagcctccactgcggcgccacag
cgaccccaggaggtcaacctgagagactacaccctggagaaacccagccaggaccgacct
caccaccatcaccaccaccgctgccaccaccgccgagatcgagataaagacagggagaga
gagaaaaggcagaggtctttggatacacctctaggtggacaacctccaggctctgctgaa
gagccggcgtctgacccagctgcctccagagagcgggcccatgaccgcggacgctcacac
gagaggaaacaccaccactcctctgtggacaagcagcgctactactcctgcgaccgcttc
tgcagccgggaacactgccacagcaaatctgccaccgctagctgtgccgcctccccctgt
gaggggcaggaaaccagcaacaagcagggcagtggttgggttaaaggcagcccagtggca
ttgagttccagttctagcacgccaagccgcggacgtcggcagctcccccagacccccctt
accccacggccaggggtggcctacaagactgccaattcctcccccgtgcactttgtgtcc
agccaggcctctgtgagtcccggccggctgagccgcggcctgtcggagcacaacgccatc
cggcacagcagctccctccacatcccctgccccgtcactcgtatcagctccgagcccttc
ctgggccggggccacggcgatgccctgggcagcccttacggcagcctccgggaccagctg
gacgtcttccaggatgtggcgtcattctcgcccagcccccgtaccggacgctcatcttgg
accgcactgcctcgcatgatgggagccctgcctccggctccacagcagaaccttggggtg
cccaatgggtaccacttcagctttgggggcaacaccagcccaggctctggcgtcagggca
cccaggtattaccaggaggcagaggaggatgaatggtgctag
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