Hippoglossus stenolepis (Pacific halibut): 118115352
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Entry
118115352 CDS
T08308
Symbol
snrnp200
Name
(RefSeq) U5 small nuclear ribonucleoprotein 200 kDa helicase
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118115352 (snrnp200)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
hsp03041
]
118115352 (snrnp200)
Enzymes [BR:
hsp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
118115352 (snrnp200)
Spliceosome [BR:
hsp03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
118115352 (snrnp200)
Complex C
U5 SnRNP specific factors
118115352 (snrnp200)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
SNRNP200_wHTH
DEAD
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
SWI2_SNF2
PhoH
DUF603
Motif
Other DBs
NCBI-GeneID:
118115352
NCBI-ProteinID:
XP_035022340
LinkDB
All DBs
Position
9:10214510..10227092
Genome browser
AA seq
2136 aa
AA seq
DB search
MADVTARSLQYEYKANSNLVLQADRSLIDRTRRDEPTGEVLSLVGKLEGTKMGDKSQRTK
PQKLEERRDKRRKRDEDRHDINKMKGFTLLSEGIDEMVGIVYKPKTKETRETYEVLLSFI
HAALGDQPRDILCGAADEVLAVLKNDKMRDKERRREVEQLLGPAEDTRYHVLVNLGKKIT
DYGGDKDLQNMDDNIDETYGVNVQFESDEEEGDEDQFGEVRDEHSDEDSEGEEAGVGCAL
SANLGATGDVMTVKKKDLHPRDIDAFWLQRQLSRFYDDAIVSQKKADEVLEILKTASDDR
ECENQLVLLLGFNTFDFIKILRQHRRMIQYCTMLASAQSEAEKERIIGKMEADQELSKIL
YQLQETEKEDIIREERSRRERLRKSRVDDLEAMDVDHGESMAPRQVLDLEDLAFTQGSHF
MANKRCQLPDGSFRKQRKGYEEVHVPALKPKAFGDDEVLLPIEKLPKYAQAGFEGFKTLN
RIQSKLFKTAMETDENLLVCAPTGAGKTNVALMAMLREIGKHINTDGTINVDDFKIIYVA
PMRSLVQEMVGSFSKRLASYGITVSELTGDHQLCKEEINATQIIVCTPEKWDIITRKGGE
RTYTQLVRLIIIDEIHLLHDDRGPVLESLVARTIRNVELTQEDVRLLGLSATLPNYEDVA
TCLRVDPAKGLFYFDNSFRPVPLEQTYVGITEKKAIKRFQIMNEIVYEKIMEHAGKNQVL
VFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSASTEVLRTEAEQCKNLELKDLLPYGF
AIHHAGMTRVDRTLVEDLFADRHIQVLVSTATLAWGVNLPAHTVIIKGTQVYSPEKGRWT
ELGALDILQMLGRAGRPQYDTKGEGILITSHGELQYYLSLLNQQLPIESQMVSKLPDMLN
AEIVLGNVQTVKDAVNWLGYTYLYVRMLRNPTLYGVSHDDRSADPLLERRRTDLVHTAAN
VLDKNSLVKYDKRTGSFQVTDLGRIASHFYITHDSIQTYNQLLKPTLSEIELFRVFSLSS
EFRNINVREEEKLELQKLLERVPIPVKESIEEPSAKINVLLQAYISQLKLEGFALMADMV
YVTQSAGRLMRAIFEIVLNRGWAQLTDKTMNLCKMIDKRMWQSMSPLRQFKKLPEEVIKK
IEKKNFPFERLYDLNHNEIGELIRMPKMGKTIHKYVHQFPKLDLAVHLQPITRSTLKVEL
TITPDFQWDDKIHGSSEAFWILVEDVDSEVILHHEYFLLKAKYAQDEHLVTFFVPVFEPL
PPQYFIRVVSDRWLSCETQLPVSFRHLILPEKYPPPTELLDLQPLPVTALRNSAFEALYQ
NKFPFFNPIQTQVFNAVYNSDDNVFVGAPTGSGKTICAEFAILRMLLHNAEGRCVYITPM
EALAEQVFVDWHQKFQDILNKKVVLLTGETSTDLKLLGKGDIIVSTPDKWDILSRRWKQR
KNVQNVSLFIVDEAHLIGGENGPVLEVICSRMRYISSQIERPIRIVALSSSLSNAKDVAH
WLGCSTTATFNFHPNVRPVPLELHIQGFNVSHTQTRLLSMAKPVYHAIMKHSPSKPAVVF
VPSRRQTRLTAIDILTFCAADVVPQRFLHCTEKDLAPFLDKVNDATLKETLANGVGYLHE
GLSAMERKIVEQLFNSGAVQVVVSSRSLCWGINISAHLVIVMDTQYYNGKIHAYVDYPIY
DVLQMVGKANRPMLDDEGRCVIMCQGSKKDFFKKFLYEPLPVESHLDHCLHDHFNAEIVT
KTVENKQDAVDYLTWTFLYRRMTQNPNYYNLQGMSHRHLSDHLSELVENTLHDLEQSKCI
SIEDEMDVAPLNLGMIAAYYYINYTTIELFSMSLNAKTKIRGLIEIISNAAEYKNIPIRH
HEDSLLRQLAQKVPHKLNNPKFNDPHVKTNLMLQAHLSRMQLSAELQSDTEDILSKAIRL
IQACVDVLSSNGWLSPALAAMELAQMVTQAMWSKDSYLKQLPFFTSEHIKRCTDKGVESI
FDIMEMEDEDRTALLQLSDAQMADVARFSNRYPNIELSYEVAEKDNIKSGSPVLVQVQLE
REEEVTGPVIAPLFPQKREEGWWVVIGDPKSNSLISIKRLTLQQKAKVKLDFVAPVMGVH
NYTLYFMSDAYMGCDQEYKFSADVKEADSDGDSDSD
NT seq
6411 nt
NT seq
+upstream
nt +downstream
nt
atggcggatgttactgctcgtagcctgcagtatgagtacaaagcgaactccaacttggtg
ttgcaagccgatcgctctctgatcgaccgcacacggagagatgaacccactggagaggtg
ctgtcgctggtggggaagctcgaggggaccaagatgggtgacaagtctcagaggaccaaa
ccccagaagctggaggagagaagagacaagaggcgaaaaagagatgaggacagacatgat
atcaacaaaatgaagggctttaccctcctttcagaaggcattgatgaaatggtgggcatc
gtctacaagcctaaaaccaaagaaaccagagagacctacgaggtcttgcttagcttcatc
catgctgctttaggagaccagccacgtgatattctgtgtggagcagctgatgaggtgtta
gcagtgctgaagaatgacaaaatgagggataaagaaaggcggcgtgaagtagagcagctt
cttggacctgctgaggacacacgttaccatgttttggtcaatctgggcaagaagatcaca
gactatggaggagacaaggatttacagaatatggacgacaacattgacgaaacctatggt
gtgaatgtccagtttgaatctgatgaggaggaaggggatgaagaccagtttggtgaggta
cgagatgaacactcagatgaagacagcgaaggagaggaagcaggtgtgggctgtgctctt
tcagccaatcttggtgccacaggggatgtgatgacagtgaagaaaaaggatctacatcct
cgagacatcgatgccttctggctccagcgtcagctcagccgtttctatgatgatgccatt
gtctcacaaaagaaagctgatgaagtcttagaaatcctcaagactgccagcgatgacaga
gaatgtgagaatcagctggtgttgctgctgggcttcaacacctttgatttcatcaaaatc
ctccgacagcatcgtcgcatgattcagtattgcaccatgctggccagcgctcaaagtgag
gcagaaaaagaacggatcataggaaagatggaggctgatcaggaactgtcaaagatcctt
taccagctgcaagagacagagaaggaggacattattcgagaggagcgctctcgcagggag
aggttgaggaagtctcgtgttgatgacttggaagctatggacgttgaccatggagagtcg
atggcccctcggcaggtactagacctcgaggacctggcttttacccagggcagccatttc
atggccaacaagcgttgccagcttccagacggctcttttcgcaaacagcgcaaaggttat
gaagaagttcacgtgcctgcgctaaaaccaaaggcctttggtgatgatgaggtcctcctt
cctattgagaagctgcccaaatatgctcaggctggatttgaaggtttcaaaaccttgaac
cgcatccagagcaagctgtttaaaaccgccatggagacagatgagaacctgcttgtgtgt
gcacctacgggagctggtaagaccaacgtagccctgatggcaatgttgagggaaattggg
aagcacataaacacagacggaaccattaatgtggatgacttcaaaattatctacgtcgca
cctatgcgttcactagtacaggagatggtgggaagttttagtaagcgtttggcaagttat
ggcatcacagtgtctgagctgacgggagaccaccagctctgtaaagaggagataaatgcc
actcagatcatcgtctgcacccctgagaaatgggacatcatcacccgtaaaggtggagag
cgtacctacacccaactagtgcgcctcattatcattgatgaaatccacctgctgcacgat
gaccgtggacccgtgttggaatctctggtggcgaggaccatccgcaatgtggagctgacc
caggaggatgtgcgcctgttgggcctcagtgccacactgcccaactatgaggatgtggct
acctgcttgcgtgtagatcctgccaagggactcttctacttcgacaacagtttccgccct
gtccccttggagcagacgtatgtcggcatcacagagaagaaggccatcaagcgtttccag
atcatgaatgagattgtgtatgaaaagataatggagcatgctggaaagaaccaggtacta
gtttttgtccactccaggaaggagactggaaagactgccagagcaatacgagacatgtgc
ttggagaaggacacactgggtcttttcctcagagagggctcagcatccactgaagtgttg
agaactgaggcagagcagtgcaagaaccttgagctgaaggatttgctgccttacggtttc
gctatccaccacgctggtatgacaagagtggaccgtacgctggtggaggatctgtttgct
gatcgacacatccaggtcttggtgtctacagccactctggcttggggagtcaacttgccg
gcacacactgtcatcattaaaggaacgcaggtgtacagcccagagaaaggcaggtggact
gagcttggagccctggacattttacagatgcttggtcgagctggtcgtcctcagtacgac
accaagggagagggaatcctgatcacgtctcatggagagctgcagtactatctgtccctg
ctcaaccagcagctgcccatagagagtcagatggtgagcaagctgcctgacatgctcaat
gcggagatagtcctgggcaacgtgcagactgtaaaggacgctgtcaactggcttggctac
acctacctgtatgtacgcatgctccgcaaccccaccctgtacggcgtttctcatgatgac
cggagcgcagatcccttgttggagagacgcaggacggacctggtgcacacagccgccaat
gtcctggacaagaacagcctggtcaaatatgacaaaaggacgggcagcttccaggtcact
gacctgggacggattgccagtcacttctacatcactcacgactccattcaaacctacaac
cagctgttgaaacccactctcagtgagatcgagctcttcagagtcttttcactttcctca
gagttcaggaacatcaatgtgagagaggaggagaagctggagttgcagaaactactggaa
agagttcctattcctgtgaaggaaagcatcgaggagccaagtgctaagatcaatgtgctg
ctgcaggcctacatctcccagctcaaactggagggatttgctctcatggcagacatggtc
tatgttacacagagtgctggaaggttgatgcgggccatatttgagattgtgctgaacagg
ggctgggctcaactcacagacaagaccatgaatctgtgcaagatgattgacaagaggatg
tggcagtcgatgtctccgctcagacagttcaagaaactgccggaggaagtgatcaagaag
atcgagaagaagaacttccccttcgagcgtctctatgacctcaaccataatgaaattggt
gagctgatccgaatgccaaagatggggaagaccatccacaaatacgtccaccagttcccc
aaactggacctggctgtccacctgcagcccatcacccgttccacactgaaagtggagctc
accatcactcctgacttccagtgggatgacaaaattcacggttcatccgaagctttctgg
atcctggttgaggacgtggacagtgaggtcatcctccaccacgagtacttcctgctcaaa
gcaaagtacgcccaggacgaacaccttgtgaccttctttgtcccagtgttcgagcctctg
cccccgcagtacttcatccgtgtggtctcagaccgatggctctcctgtgagactcagctc
ccagtctccttccgccacttgatcctaccagagaagtaccctccgcccactgagctgctg
gacctgcagcctctgcctgttactgccctcaggaactctgcttttgaggctctctaccag
aacaagttccccttcttcaaccccattcagacccaagtgttcaacgctgtgtacaacagt
gatgataatgtgtttgtgggagcccccaccggcagtgggaagaccatctgtgccgagttt
gctattctgaggatgctgctgcacaacgcagaaggtcgctgtgtctacatcacccccatg
gaagcactggctgaacaggtgtttgttgactggcaccagaagttccaggacatcctgaac
aagaaggtggttctgctaacaggagagacgagcacagatctgaagctcttgggaaaaggt
gacatcattgtcagtacccccgacaagtgggacatcctgtcgcgtcgctggaaacagagg
aagaacgtccagaatgtcagcctcttcattgtggatgaggcacacctcatcggaggagaa
aatggacctgtgcttgaggtcatctgctccaggatgaggtacatctcctctcagattgag
cgtcccatccgcatcgtggccctgagctcttctttgtccaacgccaaagacgtggcccac
tggctgggctgcagcaccacagccacgttcaacttccaccccaacgtcaggcccgtgcct
ctggagctacacatccagggcttcaatgttagtcacactcagacccgcctgctgtctatg
gccaagccagtgtaccacgccatcatgaagcactccccctccaaacctgcagtggtgttc
gtcccatcccgtagacagactcgcctcacagccatcgacatcctcactttctgtgccgcc
gatgtcgttcctcagaggttcttgcattgcactgagaaagaccttgctccattcctggac
aaagtaaatgatgccactttgaaagagactctggccaacggtgtgggttacctgcacgag
ggcctgtctgcgatggaacgcaaaatagtggagcagctcttcaactcaggtgctgttcag
gtcgtggtgtcctctcgttcactctgctggggcatcaacatctctgcacacctcgtcatt
gtcatggacacccagtactacaatggcaaaattcatgcatatgtggactatcccatatat
gacgtcctccagatggtgggcaaggcgaacagacccatgctggacgacgaggggcgctgt
gtgatcatgtgtcagggctctaagaaggacttcttcaagaagttcctgtacgagccgctg
ccggtggagtctcacttggatcactgcctccacgaccacttcaacgctgagattgtcacc
aagacggtggagaacaagcaggacgctgtggactatctaacgtggacgttcctctaccgc
cggatgacccagaatcccaactactacaacctgcaaggcatgtcccatcgtcacctgtca
gaccacctgtctgagctggttgagaacacattacatgacctggagcagtccaagtgcatc
agcatagaggatgagatggatgtagcacctctcaatttgggcatgatcgctgcgtactac
tacatcaactacaccaccatcgagttgttcagcatgtccctgaatgccaagacaaagatc
cgtgggttaattgagatcatctctaatgctgccgagtacaagaacattcccatcaggcac
cacgaggattcacttctccgacagctggcacagaaagtgcctcacaaactgaacaaccct
aagttcaacgacccccatgtgaagaccaacctaatgctgcaagctcatctctccaggatg
cagctgagcgctgagctgcagtcggacaccgaggacattctcagcaaggcgatccgactg
atccaggcctgtgtggatgtgctgtccagtaacggctggctgagccctgccctggcagct
atggagctggcacagatggtcacacaggccatgtggtccaaggactcgtacctcaaacag
ctgcccttcttcacctcggagcacatcaagcgctgcacagataagggtgtggagagtatc
ttcgacatcatggagatggaggatgaagacagaactgctttgctgcagctctcagacgct
cagatggctgacgtggcccgcttctctaaccgctaccccaacatcgagctgtcgtacgaa
gtggcagaaaaggacaacatcaagagtgggagtccagttctggttcaggttcagctggag
agagaggaggaggtgactgggcctgtcatcgcacctctcttccctcagaaacgtgaggag
ggctggtgggtggtgatcggagaccccaagtccaacagcctcatctccatcaagaggctg
actcttcagcagaaagcaaaggttaagctggactttgttgccccggtgatgggtgttcat
aactacaccctgtacttcatgagcgacgcgtacatgggctgtgaccaggagtacaagttc
agcgcggatgtgaaggaggcggacagcgatggagacagtgactcagactaa
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integrated database retrieval system
