Hippoglossus stenolepis (Pacific halibut): 118115460
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Entry
118115460 CDS
T08308
Symbol
smarcad1a
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1A isoform X1
KO
K14439
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 [EC:5.6.2.-]
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
hsp03036
]
118115460 (smarcad1a)
Chromosome and associated proteins [BR:
hsp03036
]
Eukaryotic type
Chromatin remodeling factors
Other chromatin remodeling factors
118115460 (smarcad1a)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
CUE
DEAD
ERCC3_RAD25_C
Transforming_StpA_StpB
Motif
Other DBs
NCBI-GeneID:
118115460
NCBI-ProteinID:
XP_035022506
LinkDB
All DBs
Position
9:18857776..18870476
Genome browser
AA seq
1043 aa
AA seq
DB search
MSSYSSSSQTRITSYSSVVMRSHVSTQRTCISNELKKVLSEPKTSVTSSMKSKNPIRKPS
VHTDKEENKLEEKTTRLKEMFPQLMREELLEVIGSTSTLEEAVDACFLKGSDNKAPEQDR
KRKLDGSSSSQDSGEIQETKKRRMSEVSNEDDDENNEPSWEKQEAMVRRLQKKFPDQDKE
ELRMVLQEHDWDAEEALQVLQMFSDPDTNSSTPESEEKKSSKSNSKDKSSTDHKELRRHK
DHRDSAKRNGNVNSKDHTIISETDGDSTDDTEASKDSEDESDPEDIKVSIPNTSRASTMN
TWLQKSSHPVSSSSSVKKTTTSSSLKPSSSSSSSSSSSSSSTAQMLSRFASGTSIAKKRA
AERKTKARASDERVSSEGENDDEEDTVSSEFENSDEELDAQGAMTEIKKEVLKFFREASR
DELSLITGCSVKKALKIVELRPFNSWQSLVEVFHKANGLSESLLGGCRLVLKERKMVLGL
MVNCKTISSNMVKQVTEVMEKGTGAMKQPRILNSQLRLKPYQLIGLKWLLLLHEHKLSGI
LADEMGLGKTIQAIAFLAQLYENGIEGPHLIVVPSSTLDNWVRELKLWCPRLKVLIYCGS
VEDRRYLRHDILNNKSDFHVIVTTYNLAIGNDNDRSLFRKLSLEYAVFDEGHMLKNMSSL
RYRHLMAINAQHRLLLTGTPLQNNLLELMSLLNFIMPSMFSSTTTQLTKMFSIKSHEEQS
HFERDRTSQAKLIMKPFILRRVKSEVLKQLPAKEEKVESCSMSEKQQVLYEKLFQKLKAS
TPGEKRELCNVMMQLRKMANHPLLHRQYYTTEKLKAMSKLMLKEPTHFDADAALIQEDME
VMSDFELHRLCQRYSTISSYQLENNLLLDSGKFHYLKELLASLKNKGDRVVLFSQFTMML
DIVEVLLKHHKHRYVRLDGSTPIADRIVLIDEFNTDPEIFVFLLSTRAGGLGINLTSANV
VILHDIDFNPYNDKQAEDRCHRVGQTRVVKVIRLISKGSIEDCILELGQKKLKLEQDMTA
AEQGGEGFIPEDMASLLKASLGL
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
atgtcatcctactcgtcaagctcccagaccagaatcacatcatatagcagcgtcgtgatg
aggtcacacgtgtcaacacagcgcacctgcatttcaaatgagcttaaaaaggtcctctct
gaaccaaagaccagcgtaacatcaagtatgaaatccaagaatccaattaggaaaccgtca
gttcatacggataaagaggagaataagctcgaggaaaaaacaaccaggcttaaagagatg
tttcctcagttgatgagggaagagctactcgaggtcattgggagcacaagcacattggaa
gaggctgtagatgcctgctttttaaagggctctgataacaaagctccagaacaagacaga
aagagaaagctggatggatccagcagttctcaggacagtggtgagattcaagagaccaag
aagaggagaatgtcagaggtctctaatgaagatgacgatgaaaataatgagccaagctgg
gagaagcaggaagccatggtgagaagactgcagaaaaagtttcctgaccaggacaaggag
gagctgcggatggtgctgcaggaacacgactgggatgccgaggaggctctgcaggttctt
cagatgttctcagacccagataccaactccagcacacctgagtcagaagaaaagaaatcc
agcaaatcaaatagtaaagacaagtcaagcacggaccacaaagagttgaggcgccacaaa
gatcacagagacagtgcaaagaggaatggtaatgtgaactctaaagatcacacaattatc
agtgaaacagatggagacagtacagatgatacagaagcgtcaaaagacagtgaagacgaa
tcagacccagaagacattaaagtttccatacccaacacaagtagagcttccactatgaac
acgtggctacaaaaaagctcccacccagtgtcttcgtcctcctctgtcaagaaaacaact
acctcttcgtccctaaagccatcctcctcctcctcttcttcctcctcctcctcctcgtcg
tccactgcccagatgctgtccagatttgccagtggcacgagtatagcgaagaaacgggca
gcagagagaaagacaaaggcgcgtgcctctgatgaacgtgtcagttctgagggggaaaat
gacgatgaagaggacacagttagcagcgagttcgagaactctgatgaggagctcgacgct
caaggtgccatgacggaaataaagaaggaggtgctcaagtttttccgggaggcatcaaga
gatgagctgtcgctgatcaccggctgttctgttaaaaaggccctgaaaattgtggagctg
agacccttcaatagctggcaaagcctggtcgaagtctttcacaaggccaatggactgtcg
gagagtttactcggcggctgcagacttgtcctcaaggagcggaagatggtgttggggctc
atggtcaactgtaagactatttcctcaaatatggtcaaacaagtgactgaagtgatggag
aagggcacaggggccatgaaacagcccagaatactcaacagccagttacggctgaagcca
tatcagctgattggtctgaagtggctgctgctcctgcatgagcacaagctcagcggtatc
ctggctgatgaaatgggtttggggaaaactatccaagccatagcgtttctggcccagcta
tacgagaatggaatagagggtcctcatctcatcgttgtgccgtcctctacgctcgataac
tgggtcagagagctgaagctgtggtgcccacgcctcaaagttctaatctattgcggatct
gtggaggaccgccgctacctcagacacgacatcctcaataacaagtctgatttccatgtc
atagtgaccacatacaatttggcgataggaaacgataacgaccgcagccttttccgcaag
ctgagtctggagtatgctgtgtttgatgaaggtcacatgctgaagaacatgagcagcttg
cgctaccgccacctcatggctattaatgcacagcatcgtttgctgctgacaggaactcct
ttacagaacaacctcttagagttgatgtctctcctcaacttcatcatgccttctatgttc
tccagcaccacgacacagctcaccaaaatgttttctattaaatcccacgaggagcagagc
cattttgaaagggatcgtacttctcaggccaaactcatcatgaaaccgtttatcctccga
agggtcaagagtgaggttttaaagcagctgccagcgaaggaggagaaggtggagtcctgc
tcgatgagtgagaagcagcaggtgctgtacgagaaactctttcaaaaactcaaggcctcc
acccctggcgagaagcgggagctgtgtaatgtgatgatgcagttgaggaagatggccaac
cacccactgctccacagacagtactacaccacagagaagctcaaagccatgagcaaactc
atgctcaaggagccaactcactttgatgcagatgcagctctgatccaggaggacatggag
gtgatgtcagactttgagctgcatcgtctgtgccagcgatactccaccatcagctcctac
cagcttgaaaacaatctcctgcttgactctgggaagttccactacctcaaagagcttctg
gcctctctaaaaaacaagggcgacagagtggtattattcagtcagttcaccatgatgctg
gacatcgtggaagtgctgctgaaacatcacaagcatcgttacgtccgactggatggatct
acacccatagccgacaggattgtgttgattgatgagttcaacacggaccctgaaatattt
gtgttcctgttgtcaactcgtgctggaggcctgggcatcaacctcacgtcagctaatgtc
gtgattctacatgacatcgacttcaacccctacaatgacaaacaggcagaggacaggtgt
caccgtgtgggacagaccagggttgtgaaggtgattaggctgatcagtaagggcagcata
gaggactgcattctggagctgggacagaagaaactaaagctggagcaggacatgactgct
gctgagcagggtggtgagggattcataccggaagatatggcatctttactcaaagcttca
ctgggactgtga
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integrated database retrieval system
