KEGG   Hippoglossus stenolepis (Pacific halibut): 118115560
Entry
118115560         CDS       T08308                                 
Symbol
atxn2
Name
(RefSeq) ataxin-2 isoform X1
  KO
K23625  ataxin 2/2L
Organism
hsp  Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:hsp00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:hsp03019]
    118115560 (atxn2)
Messenger RNA biogenesis [BR:hsp03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   mRNA cycle factors
    Common to processing body (P body) and stress granule
     118115560 (atxn2)
SSDB
Motif
Pfam: SM-ATX LsmAD PAM2
Other DBs
NCBI-GeneID: 118115560
NCBI-ProteinID: XP_035022679
LinkDB
Position
9:complement(21039045..21058138)
AA seq 1136 aa
MSMKAGGNRSKPGGGSAAGAPAPGAGGSGGGRQNLGRGRHSGKGPAAVIFNGVYANMRMV
HVLTSVVGTKCELKVKDGAVYEGVFKTYGPECDLVLDAAHSKSPEPSIGPRKEDIVESII
FKASDVVVVTFKDVDLSFAKKVSSDTDNFTDAAVSSRINGEHKEKDLEPWDGGETHNSDS
LESLDTDVSNGWDPNDMFKYNEEKYGVMSTYDSSLSTYTVPLERDNSEEFLKREARASQL
AEEIEASATYKARVALENDERSEEEKYTAVVRGEREPHTLSSRENKYIPPGQRNREAMSW
GPGRQNSPRLAQGSAGPSTPRPGPHDYSPNSGADQRVVNGGSSHWPSPCPSPSSRPPSRY
QSGPSSLPPRAATPTRPPSRPPSRPSRPPSHSSHPSYPSSSSSFSHHGPTSPASTLPKRM
SSEGPPRMSPKSQRTPRAHRVPPCRTTGIPPGVDLISHNAPGEVPVTTPSRSSSSGGTWS
SVVSGAHRPRSPRQNSMGGASPGSSSLPSPQTGTAPVETVVTPTSASSPTAACPAPNMVA
SPTGDAKECRVQETRQTSPTANKENIKPLESSPSIPRPVCKGPPSMAPDHRKQIDNLKKF
SVDFRLQSSSNPDPAFDQMMTKPPRDPADKPKDLPLDKTSTVAREGNEEGVVVIAAGTAA
GAPAPSSANTNTSKPGSPAALSPSPSAPDLKRAGLDVASQGVQTTATFSGAKHEEKEEKK
EAVQDQVRKSTLNPNANEFKPRFNQQPKPANTPTPPRPQGQPSPSIVVQQPPAVYSQTVC
FPQMYPLTPVSPGVQKSIIWKSPAMYQVQMPHMTVSQSKPYRPGKVPNMPQQRSDQHHPQ
GTPTMMHPVTAAGPPIVAQSPAYSAQYFTCSPQQFTSQPLVQQMTHYQSQAQHVFSPVMQ
GSARMMGPPTHGQPSLVSSSTTQYPEQTHTMYVSQGPMPQQYPHPSATLHAHPQHPQPSA
TPTGQGQQGGPQQHGGPPNHPSASPVQHPQHPQAAAAAAAAQALHMANQSPQQQMYSALA
PTPPSMTPGPNPQSPQASFPSAQQTVYIHPQQVQHGYNHNHMAHVQQAHMQSGLVQSHHQ
APNHPQMMLMATQGPPGGPQPQMPQNALNPIPVSSTTHFSYLAHPQVQPHHHQQQL
NT seq 3411 nt   +upstreamnt  +downstreamnt
atgtcaatgaaggccggtggaaatcgcagcaagcccggcggtggcagcgccgctggtgcc
cctgcccctggagccggaggaagcggcgggggacgacagaatctgggcaggggaagacac
agtggtaaaggtcctgcagcagtcattttcaatggtgtatatgcaaatatgaggatggtc
catgtcttgacttcagttgtggggaccaagtgtgagctaaaagtgaaagatggtgcagtc
tatgaaggagtctttaagacatatggtccagagtgtgacctggtgttggatgcagcccac
agtaagagccctgagccgagcataggccccaggaaagaggatattgtggagagcatcatt
ttcaaggcctcagatgtggtagtggtgaccttcaaagatgttgacctgagtttcgccaag
aaagtctcctctgatacagacaacttcacagatgcagcagtgagcagtaggatcaatggc
gagcacaaagagaaagatctagagccttgggatggtggagagacccacaactctgacagc
ctagagtctctggatacagatgtgtcaaatgggtgggaccccaatgacatgttcaagtac
aatgaggagaagtatggagtgatgtctacatatgacagcagcctctccacatatacggtc
cccctggagcgggacaactcggaggagttcctcaagagggaagcgcgtgcttcccagctg
gccgaggagattgaggccagtgccacatacaaggcccgcgtggccctggagaatgatgaa
cgctccgaggaggagaaatacactgcagtggttcgaggggagagggagcctcacacgctt
agcagcagggagaacaagtacattcctccaggtcagaggaacagggaagcgatgtcttgg
ggaccaggacgtcagaattcacctcgtctggctcagggctcagccgggccctcgacccct
cgacccggacctcacgactacagtcccaactccggagccgaccagagggttgttaacgga
ggttcatcccattggccctcaccctgcccgtctccttcctcccgccccccctctcgttac
cagtctggcccctcctccctgcctcctcgggcggccacgcccaccaggccaccttccaga
cccccctctcgaccctccaggcctccctctcattcatcccacccctcctatccctcctcc
tcatcctccttttcccaccatgggcccacctcgccagcctccactctgcccaaacgcatg
tcttcagaaggtccacccaggatgtctcccaaatcccagcggacacctcgtgctcacaga
gtgccaccttgccggacaactggcatccctcctggagtggacttaatttcccacaatgcc
cccggagaggtcccggtgactaccccaagtaggagcagctcctctggagggacatggtct
tcagtagttagcggagctcaccgacctcgctcccctcgtcagaatagcatgggtggagcc
tcccctggctcctcctccctcccgtcacctcagacaggaacagctcctgtggaaactgtc
gtcacaccaacatcagcttcctctcctactgctgcttgtcccgctcccaacatggttgcc
tcaccaacaggagatgcaaaagagtgtcgcgttcaggagacgagacaaacatcccccacg
gcaaacaaggagaacatcaagcccttggagagctcgcctagtatccccagaccagtctgc
aaaggacccccttcaatggcaccagaccacagaaaacaaatagataatttaaagaaattt
agtgtagattttaggttgcagtctagttcaaacccagaccccgcctttgaccagatgatg
accaagccacccagagatccagcagacaagcctaaagaccttcccctggacaaaacctcc
accgtggcgcgggagggcaatgaagagggtgttgtagtgattgctgctggaaccgctgcg
ggtgcccctgctccttcctctgccaacacaaacaccagtaagcctggcagccctgctgct
ctgtccccatctccctcagccccagatctaaagagggcagggctggacgtggcctcgcag
ggagttcagacgacggccacattcagtggagccaagcatgaagagaaggaggagaaaaag
gaggctgtgcaagatcaagtgagaaaatcaaccctgaacccaaacgccaacgagttcaaa
cccaggttcaatcaacagcccaaaccagccaacaccccgacaccccctcgtcctcagggc
cagcccagcccatccattgtcgtccagcagcccccggctgtctacagccagacagtctgc
ttcccccaaatgtatccgctcacacccgtcagcccgggagtgcagaaaagcataatatgg
aagtctccagctatgtaccaggtgcagatgcctcatatgaccgtcagccagtctaaaccc
tacagaccaggtaaagtacccaacatgccccagcagaggtcagaccagcaccacccgcag
ggcacgcccaccatgatgcacccagtgacggcagcaggaccgcctattgtagcacagagc
cccgcctattctgcccagtacttcacctgcagcccgcagcagttcaccagtcagccactg
gtccagcagatgactcactaccaatcgcaggcgcagcatgtgtttagtccagtaatgcag
gggagtgccaggatgatggggccacccacacacggccaacccagcctcgtctcctcttca
actacacagtacccagagcagacacacaccatgtatgtgtctcaagggccgatgcctcag
cagtacccccaccccagtgccactttgcacgctcacccacagcacccgcagccctctgcc
acgcctacaggccaaggccagcagggtggtccccaacagcatgggggtcctcctaaccat
ccatcagccagcccagtccagcacccacaacacccgcaggctgctgcagctgcagcagca
gcccaggccctccacatggccaaccagtctccacagcagcagatgtactcagccttggcc
cccacacccccctccatgaccccagggcccaaccctcagtctccccaggcatcgttcccc
tctgcccagcagacggtctatatccacccgcagcaggtgcagcacggctacaaccacaac
cacatggcgcacgtgcagcaggcccatatgcagtctggtttagttcagtctcaccaccag
gcgcctaaccaccctcaaatgatgctgatggccacccaggggcctccaggggggccgcag
ccccaaatgcctcagaacgccctcaaccccatcccggtttcatccaccacacatttctcc
tacctggcacatccacaagtgcagcctcatcatcatcagcagcagctgtag

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