Hippoglossus stenolepis (Pacific halibut): 118115595
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Entry
118115595 CDS
T08308
Name
(RefSeq) phospholipid-transporting ATPase ABCA1
KO
K05641
ATP-binding cassette, subfamily A (ABC1), member 1
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp02010
ABC transporters
hsp04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09130 Environmental Information Processing
09131 Membrane transport
02010 ABC transporters
118115595
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
118115595
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
hsp02000
]
118115595
Transporters [BR:
hsp02000
]
ABC transporters, eukaryotic type
ABCA (ABC1) subfamily
ABCA1, 2, 3, 4, 7, 12, 13 subgroups
118115595
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ABC_tran
ABC2_membrane_3
R1_ABCA1
AAA_21
DUF4162
AAA_23
DUF7447
MRS2-like
Motif
Other DBs
NCBI-GeneID:
118115595
NCBI-ProteinID:
XP_035022752
LinkDB
All DBs
Position
2:complement(11719039..11757062)
Genome browser
AA seq
2267 aa
AA seq
DB search
MAVFTQLGLLLWKNFTYRRRQTIQLLIEIIWPLFIFFILISVRMHYPPYEQHECHFPNKA
MPSAGTLPWMQGIICNANNPCFRHPTPGESPAVVGNFNDSIISRLFIDAKKILLYTQNDK
SYEGYKGLLRALRKLQKNTARFKLKDFLKDNETLSHFLHHNASLPRHALKQIVEADVNLE
KVLTKGFGFHLRDLCNSTTLEEFVHIADRNVSLMTQEIICKSSSDWLDKAQSHFLSNLDF
LKPIRKDVKSDPKVVQEVSAATDHLLESLGALAVELASMNSWKDMRKEILYLTANATGSP
NQMYQAVSRIVCGHPEGGGLKIKSLNWYEDNNYKALFGNHGNDSDSEPHTSYDNSSTPYC
NSMMRSLESSPISRMIWRALKPLLMGKILYTPDTPATQRIIHEVNKTFQELGVLRDLGGM
WEEMRPKVWSFMENSEEMDLVRTLLQNNASAAFFNTQLSDTEWRVSDVINFLSKSSEDRR
PAGSAFTWREVFNETDQAIQTISRFMECVNLDKLEPVANEERLVNKSMGLLNNQKFWAGI
VFPDIARTNSTDLPPNVNYKIRMDIDNVERTNKIKDGYWDPGPRADPFEDLRYIWGGFSY
LQDVIEHGIIRAITGSKERTGVYIQQMPYPCFVDDIFLRVMSRSMPLFMTLAWMYSVAII
IKGVVYEKEARLKETMRIMGLNNGTLWLSWFISSLIPLLISASLLVLLLKMGNLLPYSDP
GVVFLFLGSFGVVTIMQCFLISTLFSRANLAAACGGIIYFTLYLPYVLCVAWQDYVGFGA
KLLVSLLSPVAFGFGCEYFALFEEQGVGIQWSNLLASPLEDDSYNLTTSICLMLFDAFLY
GVMTWYIEAVFPGQYGIPRAWYFPFTRTYWCGEKENRSLATPLSKKGNAEAVCIEEEPSH
IEPGVYIENLVKVYSHGNKLAVDELSLRFYEGQITSFLGHNGAGKTTTMSILTGLFPPTS
GTAYILGKDIRTELSTIRQNLGVCPQHNVLFSMLTVEEHIWFYGRLKGLPEEKVKAEMEQ
IVNDVGLPHKRKSRTSTLSGGMQRKLSVALAFVGGSKVVILDEPTAGVDPYARRGIWDLL
LKYRQGRTIILSTHHMDEADILGDRIAIISHGKLCCVGSSLFLKTQLGTGYYLTLVKRDY
DLTLQSCRNSASTVCYKKTEKEDNVSESSSDAGLGSEPESETTTIDVSLISNLIFKHVSE
ARLVEDLGHELTYVLPYQSAKDGAFVELFHELDDRLTDLGISSYGISDTTLEEIFLKVAE
DSGVDAVELSDGVVPTRTRRHHAFGDHQSCLKPFTEDDFEFNDSEESRETDWLSGTDGKG
SYQVKGWSLKRQQFVALLWKRFLYARRSRKGFFAQIVLPAVFVCIALVFSLIVPPFGKYP
SLALDPSMYGEQFTFISNDMPENSHTNKLLQALMEKPGFGTRCMEGEPITNNSCTALEDE
WSIPQVAQGLMDMFDNGNWTMENPSPLCECSCEGRKRMLPECPAGAGGLPPPHMKISDED
TLQNLTGRNISDYLVKTYAQIIGKSLKNKIWVNEFRYGGFSLGAHGSQLLSDSDDIDEAI
AHLRRRFHLERGAAADRFFHSLSSFVQGLDSKNNVKIWFNNKGWHSIGSFLNVMNNGILR
ASLPAGKDPTKYGITAHNHPLNLTKEQLSQVALMTTSVDVLVSICVIFAMSFVPASFVVF
LIQERVNKAKHLQFISGVQPLLYWLANFVWDMCNYIVPATLVIIIFMCFQQDAYVSSTNL
PVLALLLLLYGWSITPLMYPASFFFKIPSTAYVVLTSVNILIGINGSVSTFVLELFGSNE
IGGINDILKNVFLIFPHFCLGRGLIDMVKNQAMADALERFGENRFRSPLAWDMVGKNLFA
MAIEGLIFFIITVLIQYRFCIKARSSTSHLKPIGEEDEDVARERQRILGGGGQTDILELR
QLTKIYKRKQKPAVDRLCVGIPPGECFGLLGVNGAGKTSTFKMLTGDSLVTGGEAYLAGK
SVTSEIDEVHQNMGYCPQFDAINDLLTGREHLEFYAILRGVPEKEVCEVAEWGIRKLGLV
KYVDKSAGSYSGGNMRKLSTAIALIGGPPVVFLDEPTTGMDPKARRALWNAILSIIKEGR
SVVLTSHSMEECEALCTRMAIMVNGRFRCLGSVQHLKNRFGDGYTIILRVAGPDPDLRPV
MEFIEHELPGSNLKEKHRNMLQYQLPSSLTSLARIFSLLSQNKEALSIEDYSVSQTTLDQ
VFVNFAKDQSDEDHLKDIHLSKRDALVVDFSQLNTFLKDNKTRESCV
NT seq
6804 nt
NT seq
+upstream
nt +downstream
nt
atggcggtcttcactcaactggggttactgctttggaaaaacttcacctaccgacggaga
cagactatccagctgctgattgagataatctggcccctgttcatcttcttcatcctgatc
tcagtgcggatgcactatccgccctacgagcaacatgaatgccatttcccaaacaaggcc
atgccctctgcgggtaccctgccctggatgcaaggcatcatctgtaacgccaacaacccc
tgtttccgccatcctactcctggagagagtcccgcggtcgtgggaaacttcaatgactct
ataatctctcgtctgttcatcgatgccaaaaagatcctgctgtacactcagaacgataaa
agctacgagggctacaaggggctgctgagggccctcaggaagctgcagaagaacactgcc
cgtttcaagttgaaggactttttgaaagacaatgagaccctttcccacttcctgcaccac
aatgcctcacttcctcgtcatgctttgaaacagatagtggaggctgacgtcaatctggag
aaggtgctgactaaaggttttggcttccacctcagagacctctgtaacagcacgacactg
gaggagtttgtccacattgctgaccgcaatgtgtcgcttatgactcaagaaattatctgc
aagtcctccagcgactggcttgacaaggcccagagccacttcctgtccaacctagacttc
ctcaaacccattcggaaggacgtgaagtcggatcccaaagtcgttcaggaggtctcagct
gcaaccgaccatcttctggagagcctgggggcgctggctgtggagctcgccagcatgaac
agttggaaggacatgcgaaaggagatcctgtatctgactgcaaatgccacaggctctcca
aaccagatgtatcaggctgtgtcacgtatcgtctgcggacaccccgagggaggtggcctc
aaaattaagtctctcaactggtacgaggacaacaactacaaggccctgtttggaaaccat
ggcaacgacagcgacagcgagccccacacttcttacgacaactcttccacaccttattgt
aacagcatgatgcggagtctggagtccagccccatttccaggatgatctggagagccctg
aagccactgctcatggggaagatcctgtacaccccagatacaccagcaacacagaggatc
atccatgaggttaataagaccttccaggagctcggcgtgctgagggatcttggagggatg
tgggaggagatgagacccaaagtttggagcttcatggagaatagcgaagaaatggactta
gtcaggaccctgctgcagaataacgccagcgctgcattcttcaacacccagctcagtgat
actgagtggcgcgtgtcagatgtgatcaatttcctgtccaagtcctccgaggaccggaga
cctgcaggatccgccttcacctggagagaggtcttcaacgagaccgaccaggccatacag
accatctcacgcttcatggagtgtgtgaacctggacaagctggagcctgtagctaatgag
gagcgactggtcaacaagtccatgggtctcctgaacaaccagaaattctgggccggaatc
gtgtttcctgatatcgcccgtaccaacagcaccgacctgcctcccaatgtcaactacaag
atccgcatggacatcgataatgtggagaggacgaacaaaattaaagacgggtattgggac
cctggtcccagagcagaccccttcgaggatctgcggtacatctggggtggattttcctac
ctgcaggacgtcatcgagcacggaatcatcagagccatcactggctcaaaggagaggaca
ggcgtctacattcagcagatgccttacccctgttttgtcgatgacattttccttcgggtg
atgagtcggtcgatgcctctcttcatgaccttggcgtggatgtactccgtggccatcatc
atcaagggcgttgtgtacgagaaggaggcacggctcaaggagaccatgaggatcatggga
ctgaataatggcactctgtggctcagctggttcatcagcagtttaatcccgctgctgatc
agcgcctccctgttggtcttgttattaaagatgggcaacctgctgccgtacagtgatcca
ggtgtcgtgttcctgttcctggggtcgttcggcgtggtaaccatcatgcagtgtttcctc
atcagcaccctgttctctcgtgccaacctggcagcggcctgcgggggcatcatctacttc
actctctacctgccctatgtgctgtgtgttgcctggcaagactacgtcggctttggagcc
aaacttcttgtgagtttgctgtctcctgttgcttttgggttcggctgtgaatacttcgcc
ctgttcgaggagcaaggcgtcggtatccagtggtccaatctgctggccagccctctggag
gacgacagctacaatctaaccacctccatctgcctcatgctgtttgatgcctttctgtac
ggagtaatgacctggtacatcgaagctgtgtttcctggtcagtatggtatccccagggct
tggtacttccctttcactaggacgtactggtgcggggagaaagagaacagaagcctcgcc
acccctctgtcaaagaagggcaacgctgaagctgtgtgtattgaggaggagcccagccac
atcgaaccgggtgtttacattgaaaatttggtgaaggtctacagccatgggaacaagctg
gccgtagacgagctgtcactgaggttctacgaaggacagatcacctccttcctcggacac
aacggagctggcaagaccacaactatgtcaatcctgacggggttgttcccgcccacttcc
ggtacggcctacatccttggcaaggacatccgcactgagctcagcaccatccgacagaat
ctgggcgtctgtccgcagcacaacgtacttttcagcatgctgacggttgaggaacacatc
tggttctacggccgtctgaaggggctgccggaggagaaggtgaaggctgagatggagcag
attgtgaacgatgtcgggctgccgcacaaacgaaagtcccgcaccagcaccttgtccggt
gggatgcagaggaagctgtcagtggccctggcttttgttggaggctcgaaggttgtgatt
ctggatgaaccgactgctggggtcgatccttatgcacgtaggggcatctgggacttgctg
cttaaatacagacagggccgcaccatcatcctgtccactcatcacatggatgaggccgac
atcctgggcgaccgcatcgccatcatctcccatggcaagctgtgctgcgtgggctcctcc
cttttcctgaagactcagctggggacaggctactacctgaccctggtcaagagagactac
gacctgacacttcagtcctgcaggaattctgccagcaccgtctgctacaagaaaacagag
aaggaggacaacgtatcagagagcagttctgatgctggtttgggcagcgaaccggagagt
gaaaccaccaccatcgatgtatccctcatctccaacttgatattcaagcacgtctccgag
gctcgcctggtggaggatctcggccatgaactcacatatgtcttgccctaccagtccgct
aaagacggagcctttgtggagctcttccatgagcttgacgaccgactgaccgacctggga
atatccagctatggaatatctgacaccaccctggaagagattttcctgaaagtggctgag
gacagtggagtggacgctgtggagctttcggatggagtcgtaccaacaaggactcgtcgc
catcacgccttcggagaccaccagagctgcctgaagcccttcaccgaggacgactttgaa
ttcaacgactctgaagagtcccgtgagaccgactggctcagtggaacagatggtaaaggt
tcataccaggtgaaaggctggagtctgaagagacagcagtttgttgcactgctctggaaa
cgattcctctatgcccgacgctccagaaaaggattctttgctcagattgttctgcctgcg
gtgtttgtgtgtatcgctctggtgttcagcctgatcgttcctccctttggaaagtacccc
agtctggctctggatcccagcatgtacggagaacagtttaccttcatcagtaatgacatg
cctgagaattctcacaccaacaaactactgcaagctctgatggaaaaaccaggatttgga
acacgctgcatggaaggggaacccataacgaacaactcgtgcactgcattagaggatgag
tggtcgatcccacaagtcgctcaaggtttgatggacatgtttgacaacggcaactggacc
atggagaatccgtctcccctgtgcgagtgcagctgcgaaggccgcaagagaatgctgccc
gagtgtccggctggtgctggcggacttccaccaccacatatgaagatcagtgacgaagac
acgcttcagaatttgactggcagaaacatctcagactatctggttaaaacctacgctcag
attatcggaaagagcctgaagaacaagatttgggtcaacgagttcagatatggaggattc
tcactgggtgcccacggttctcagcttctgtccgacagcgacgatatcgacgaagcaatc
gctcatctgaggagacgcttccacctggagaggggagcggcagctgatcgtttctttcac
agtctctccagttttgtccaaggactagacagcaagaataatgtcaagatctggtttaac
aacaagggctggcacagcatcggctccttcctcaacgtgatgaacaacggcatcctgcga
gcaagtctgccagccggcaaagaccccaccaagtatggcatcaccgcccacaatcaccca
ctcaacctcaccaaggagcagctctcacaggtcgcattgatgacaacgtcagtggacgtg
ttggtgtccatctgcgtgatctttgccatgtccttcgtcccggccagttttgtggttttc
ctcattcaggagagagtgaacaaggcaaaacacttgcagttcatcagtggagtgcagcct
ctgctctactggctggccaactttgtctgggatatgtgcaactacatcgtcccagccaca
ctggttatcattatctttatgtgtttccaacaagacgcctacgtctcctccactaatctg
ccagtgctggctctgctgctgctgctctacgggtggtcgatcacccctctgatgtaccca
gcctcatttttctttaagatccccagcacggcctacgtggttctgaccagcgtcaacata
ctgataggaatcaatggcagtgtctccacatttgtgctggagctgttcggcagcaatgag
atcggtggcatcaacgacatcttgaagaacgtgttcctcatcttcccacacttctgtctg
ggcagaggactgattgacatggtgaagaatcaggcaatggctgatgctttggagagattt
ggtgaaaaccggttccgttcacctctggcttgggacatggtgggaaagaatctgtttgcg
atggccatagagggcctcatcttcttcatcatcaccgtcctcattcagtatcgcttctgc
attaaggccaggtcgtccacaagtcacctgaagcctattggagaagaagatgaggacgtg
gccagagaacgacagaggatcctgggtggaggaggacagaccgacatcctggagctcagg
cagcttaccaagatttacaagcggaaacagaagccagcagtggaccggctgtgtgtcggc
atcccccctggagagtgcttcggtttgcttggggtgaatggagcaggaaaaaccagcacc
tttaaaatgctgacaggagattctctagtgaccggtggagaggcgtacctggctggcaaa
agtgtaacttcagagatcgatgaagtgcatcagaacatgggctactgtccccagtttgat
gctatcaacgacctgctgactggcagagagcatctggagttttacgccatcctgagagga
gtgcctgagaaggaagtctgcgaggtggcagagtggggcattcggaagctgggcctggtg
aaatatgtggacaagtcagcaggcagctacagtggaggaaacatgaggaaactgtcgact
gccatcgctctcataggaggaccacctgtcgtgtttctggatgaaccaactacaggcatg
gaccctaaggcacgtcgggccttgtggaacgccatcctgagcatcatcaaggagggacga
tctgtagtcctcacctctcacagtatggaggagtgcgaggccctttgcaccaggatggcc
atcatggtcaacggcaggttccgctgtctgggcagcgtacagcacctcaagaacagattt
ggtgatggctacaccatcatcctgcgggtggctggtccggacccagaccttcggccggtg
atggaattcatagagcatgagctcccaggcagcaacttgaaggagaagcaccgcaacatg
ctgcagtaccagctgccctcgtccctcacttccctcgcccgcattttctccctgctctcc
cagaacaaggaggcgctcagcatagaggactactcagtctctcagaccactctagaccaa
gtgtttgtaaatttcgccaaggaccaaagtgacgaggaccatttgaaagacatccatctg
agcaagcgggacgctttggtagtggacttttcccagctaaacacctttctcaaagacaac
aagactcgggagagctgcgtctga
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integrated database retrieval system
