Hippoglossus stenolepis (Pacific halibut): 118115600
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Entry
118115600 CDS
T08308
Symbol
smarcb1a
Name
(RefSeq) SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1-A
KO
K11648
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily B member 1
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03082
ATP-dependent chromatin remodeling
hsp03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
118115600 (smarcb1a)
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
118115600 (smarcb1a)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
hsp01009
]
118115600 (smarcb1a)
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hsp03021
]
118115600 (smarcb1a)
03036 Chromosome and associated proteins [BR:
hsp03036
]
118115600 (smarcb1a)
Protein phosphatases and associated proteins [BR:
hsp01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
118115600 (smarcb1a)
Transcription machinery [BR:
hsp03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
118115600 (smarcb1a)
SWI/SNF complex
118115600 (smarcb1a)
Chromosome and associated proteins [BR:
hsp03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
118115600 (smarcb1a)
PBAF complex
118115600 (smarcb1a)
SWI/SNF complex
118115600 (smarcb1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF5
INI1_DNA-bd
DUF1679
Motif
Other DBs
NCBI-GeneID:
118115600
NCBI-ProteinID:
XP_035022759
LinkDB
All DBs
Position
9:26074772..26079847
Genome browser
AA seq
373 aa
AA seq
DB search
MALSKTFGQKPVKFQLEEDGDFYMIGSEVGNYLRMFRGSLYKRYPSLWRKLASVEERKKI
VESSHDHGYTQLATSVTLLKASEVEEILEGNDEKYKAISISTEPPAYLREQKGKRNSQWV
PTLPNSSHHLDAVPCSTTINRSRLGRDKKRTFPLCFDDHDPAVIHENATQSEVLVPIRLD
MEIEGQKLRDAFTWNMNEKLMTPEMFAEILCDDLDLNPLAFVPAIASAIRQQIESYPTDS
ILEEQSDQRVIIKLNIHVGNISLVDQFEWDMSERENSPEKFALKLCSELGLGGEFVTTIA
YSIRGQLSWHQRTYAFSENPLPTVEIAIRNTGDADQWCPLLETLTDAEMEKKIRDQDRNT
RRMRRLANTAPAW
NT seq
1122 nt
NT seq
+upstream
nt +downstream
nt
atggcgctcagcaagacgttcggacagaaaccggtgaaattccagctggaggaggatgga
gacttctacatgatcggatcggaggtgggaaactacctccgtatgttcagaggctccctg
tataaaagatatccgtcattatggaggaaactggcatcggtagaagaacggaagaaaata
gtggagtcgtctcacgatcatggttacactcagctggcgaccagcgtgactctgctgaag
gcctccgaggtcgaggagatcctcgaaggcaacgacgagaagtacaaagcgatttccatc
agcactgagcccccagcctacctcagggaacagaaggggaagaggaacagtcagtgggtt
cccacgctgcccaacagttctcaccacctggacgccgtgccctgctccaccaccatcaac
cgcagccgactgggccgcgacaagaagaggaccttcccactgtgctttgacgaccatgat
ccagctgtgatccacgagaacgccactcagtccgaagtcctggttccgatccgcctggac
atggagatcgaggggcagaagctcagagatgctttcacctggaacatgaacgagaagctt
atgacgcccgagatgtttgctgagatcctttgcgatgacctggacctcaacccgctggcc
ttcgtccctgccatcgcctcagccatccgacagcagatcgagtcttacccgaccgacagc
atcctggaggagcagtcggaccagagggtcatcatcaagctgaacatccacgtaggcaac
atctctctggtggaccagtttgagtgggacatgtccgagagggagaactctccggagaag
tttgccctgaagctttgctccgagctcggcttgggtggggagttcgtcaccaccatcgcc
tacagcatccgcggtcagctgagctggcaccagaggacgtacgccttcagtgagaacccc
ctccccacagtggagatagccattagaaacacaggcgatgctgaccagtggtgccccctg
ctggagaccctgacagacgcagagatggagaagaagatcagagaccaggacagaaacacg
aggcgaatgaggcgactggcgaacacggcacctgcttggtag
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integrated database retrieval system
