Hippoglossus stenolepis (Pacific halibut): 118115612
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Entry
118115612 CDS
T08308
Symbol
pole
Name
(RefSeq) DNA polymerase epsilon catalytic subunit A
KO
K02324
DNA polymerase epsilon subunit 1 [EC:
2.7.7.7
]
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03030
DNA replication
hsp03410
Base excision repair
hsp03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
118115612 (pole)
03410 Base excision repair
118115612 (pole)
03420 Nucleotide excision repair
118115612 (pole)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
hsp03032
]
118115612 (pole)
03400 DNA repair and recombination proteins [BR:
hsp03400
]
118115612 (pole)
Enzymes [BR:
hsp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
118115612 (pole)
DNA replication proteins [BR:
hsp03032
]
Eukaryotic type
DNA Replication Elongation Factors
DNA polymerase epsilon complex
118115612 (pole)
DNA repair and recombination proteins [BR:
hsp03400
]
Eukaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
Long Patch-BER factors
DNA polymerase epsilon complex
118115612 (pole)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF1744
POL2_thumb
DNA_pol_B_exo1
zf_DPOE_2
zf-DPOE
DNA_pol_B
DNA_pol_B_exo2
RNase_H_2
CENP-B_dimeris
Motif
Other DBs
NCBI-GeneID:
118115612
NCBI-ProteinID:
XP_035022772
LinkDB
All DBs
Position
9:complement(15253114..15268669)
Genome browser
AA seq
2290 aa
AA seq
DB search
MVFFKNSGRYRADRGQGGGGDQDQDDGSSALKRLERSQFTDEMDARFDFDRMKEPGEKTG
WLINMHPAEILDEDKRMISAVDFYFIQEDGSRFKVALPFKPYFYIATKRNCEREVISYVS
KKFQGKVAKLEILPKEDLDLPNHLVGLKRSYIKLSFNSLDDLMKVKREISPAVRKNRERE
HSNDAYTSMLSSALSGGHVTSTDEDVRSKSISDQLDNIVDMREYDVPYHVRVSIDLKIHV
AHWYNVRYRGSAYPPEIVRRDDLVERPDPVVLAFDIETTKLPLKFPDAESDQIMMISYMI
DGQGFLITNREIVSENIEDFEFTPKPEYEGPFTVFNEDDEAAMIQRWFDHVQETKPNIFV
TYNGDFFDWPFIETRAGLHGLSMYREIGFQKDNQGEYKSSQAIHMDCLRWVRRDSYLPVG
SHNLKAAAKAKLSYDPVELDPEEMCRMATEEPQTLATYSVSDAVATYYLYMKYVHPFIFA
LCTIIPMEPDEVLRKGSGTLCEALLMVQAFHANIVFPNKQEQVFNKLTDDGHVMDSETYV
GGHVEALESGVFRSDIPCRFKMNPAAFDFLLQRVERTMRHAMEEEEQIPLEQITNFNEVC
DEIKKKLISLKEVPNRIECPLIYHLDVGAMYPNIILTNRLQPSAVVDEATCAACDFNKPG
ATCQRSMAWQWRGEIMPASRSEFHRIQQQLESEKFPSLFPNGPPRAFHNLNREEQAKHEK
KRLADYCKRAYKKTHVTRLEQRVTTICQRENSFYVDTVRAFRDRRYEFKGLHKVWKKKLS
SAQDCGDAAEVKRCKNMEILYESLQLAHKCILNSFYGYVMRKGARWYSMEMAGIVCFTGA
NIITQARELIEQIGRPLELDTDGIWCVLPNTFPENFVVKTSNEKKPKVTISYPGAMLNIM
VKEGFTNDQYHELVDPGSLTYNTRAENSIFFEVDGPYLAMILPASKEEGKKLKKRYAVFN
EDGSAELKGFEVKRRGELQLIKIFQSSVFEAFLKGTTLEEVYASVAKVADYWLDVLYSKA
ANMPDAELFELVSENRSMSRKLEDYGEQKSTSISTAKRLAEFLGDQMVKDAGLSCRYVIS
RKPEGSPVTERAIPLAIFQAEPSVKKHFLRKWLKMSSLHDLDIRSILDWSYYIERLGSAI
QKIITIPAALQQVKNPVPRVRHPDWLHKKLLEKNDIYKQKKISELFTSEGKRQVAHQPLE
AGQAADIEDFGRPARPLQPAILISTKRKRASQGEESQVESQVLELTQSWREILGPPPPMG
EAQEELLVWLRYHKKKWELQLRQRKERKKRRRMLDGEAQPVGGGVIRDGPTTGLGSFLRR
TARSILDMPWQIVQIAETSHPGLYKLWAVIGNDLHCMKLNIPRVFYVNQKVPKQEEGAMY
KKVNRMLPRSNIVYYLYEYCVPEDMYQEHINQINADLSAPDIEGVYETQVPLLFRALVQL
GCVCMVNKHIVRDLAGREADTFDLEHLEMRSLAQFSYLEPGSVRHMYFYHHSQGHKALFG
LFIPSQRKASIFILDTVRSNQMPNLNNLYTAERTALLEKTTEDLLPPEKHNFEVRAESDP
KAIYRALQRILLNYKEERRGPTLIAVQSNWELRRLSAGMPVLEEFPVVPVHVLDEISYNV
LDWQRHGARRMIRHYLNLDSCLSQAFDMARYYHLPVGNLPQDVSIFGSDLFLARHLRKHN
HLLWLSPTARPDLGGKEADDSRLVMESDDRGSVEINSQGCYSTVCVEMDLQSLAVNTLLQ
SQHVNDMEGGASLGVSFDVIQQASLEDMMSGNQGASAHASYDETALCSNTFRILKSMVVG
WVREITQYHNVYADNQVMHFYRWLHSPSSLLYDPALHRTLHNMMKKVFLQLVAEFKRLGS
TVVYGNFNRIILCTKKRRTDDAIGYVGYITNSIHSREIFHSLSLSFSRCWEFLMWMDPAN
YGGVKGKLPSNLLPGEEGAKQKKNKRGEGEEDGSEDEDEEEAEVEEDEETDEVEELIESN
WNIMQYLPQTASCQKYFLMIVSAYIAAVYHSMKEELRRNAPGATPVKRRGGSQASQQAVG
DLSALPGMISFSQEYVSSELTQNFFTITQKIQKKVMGTRSVTQPSELFPVLPGSHLPLKN
PALEFIKYVCQVLSLDANIANQVNKLKRDLLRLVDVGEFSDDAQFRDPCNSYILPEVICH
QCNFCRDLDLCKDPSVAQDGSVLPQWFCSNCQAQYETESVEMALVEALQKKLMSYTLQDL
VCNKCKGVKDANMPLYCRCAGDFDLTFSIKSFSEQITVFQNIASHYNMSFLEETIDWLLL
MNPQVRQSSR
NT seq
6873 nt
NT seq
+upstream
nt +downstream
nt
atggttttcttcaaaaacagtgggagatacagagcggatcgaggacaaggcggaggagga
gaccaggaccaggacgatggatcctcggctctcaagcggctggagcgcagccagttcacc
gacgagatggacgcccgcttcgacttcgacaggatgaaggagccgggggagaaaaccggc
tggctgatcaacatgcaccccgcagagatcctggatgaagacaagaggatgatcagtgct
gtggacttttatttcattcaggaggatggaagcaggtttaaggtggctctacccttcaag
ccatatttctacatagccacaaaaaggaactgcgagagagaggtcatctcatacgtgtcg
aagaagttccagggaaaggtggcgaagctggaaattctcccaaaggaggatctggacctg
ccgaaccatttagttggcctgaagagaagctacatcaagctgtcgttcaacagcctggac
gacctcatgaaggtgaagcgggagatctctccagcagtgcgcaagaaccgagagagggag
cactccaatgatgcctacacttccatgttatccagtgccttgtcaggaggccatgtgacc
tccacagatgaagacgtgaggtcaaagagtatctcagaccagctggacaacatcgtggac
atgagagagtacgacgttccctatcacgtgcgagtgtccatcgacctcaagatccacgtg
gctcactggtacaatgtgcgatacagaggcagcgcttacccaccagagatcgtacggaga
gacgatcttgtcgagcgaccagatcctgttgttttggctttcgacattgagacgaccaaa
cttccactgaagtttccagatgctgagtcagaccagattatgatgatctcctacatgata
gacggacaggggtttctaataacaaaccgagagatcgtctctgagaacattgaggatttc
gagttcactcccaaacctgagtatgaagggccgttcactgttttcaatgaggatgatgag
gcggctatgattcagaggtggtttgatcacgttcaagaaacgaagccaaacatctttgta
acatacaacggagacttcttcgattggccttttattgagactcgggccggcctccatggg
ctgagcatgtacagggagatcggtttccagaaggacaatcagggggagtacaagtccagt
caggccatccacatggactgcttaaggtgggtaagaagagacagctaccttccagtggga
agtcacaatctgaaggcagcagcgaaggccaaactgagctacgacccggtagagctggat
ccggaggagatgtgccgcatggcgacagaggagccacagactttggccacttactccgtg
tcagatgccgtggccacgtattacctgtacatgaaatatgttcatcccttcatcttcgct
ctgtgcacaatcatccccatggagcctgatgaggtgctgcgtaaaggttctgggactctg
tgtgaggccttgctcatggtgcaggcctttcacgccaacatcgtcttccccaacaagcag
gagcaggtcttcaacaaactgacagacgacggccacgttatggactctgagacgtacgtg
ggcggccacgtggaggcgctggagtccggagtgtttcgcagtgacatcccctgccgtttc
aaaatgaacccggctgcattcgacttcctgcttcaaagagtcgagagaacgatgcgtcat
gccatggaggaagaggagcaaatccctctggagcaaatcacaaactttaatgaggtctgc
gacgagatcaagaagaagctgatttcactgaaggaggttccaaacaggatcgaatgcccc
ctcatctaccatctggacgttggggcgatgtaccccaacatcattctcaccaaccgtctg
cagccatctgctgtggttgacgaggccacgtgtgctgcctgtgactttaacaaacctgga
gccacctgtcagaggagcatggcctggcagtggagaggagaaatcatgcctgccagtcgc
agtgagtttcaccgtatccagcagcaactggagtcagagaagttcccgtcgctgtttccc
aacggtccacctcgcgctttccacaatctcaacagagaggagcaagccaagcatgagaag
aaacgtttggcagactactgcaagagagcctataagaagacacatgtcaccaggctggag
caacgcgtcaccaccatctgtcagagagaaaactccttctatgtggatactgtgagagct
ttcagagatcgacgctacgaattcaaagggctccacaaggtgtggaagaagaagctgtcg
tcagctcaggactgtggagacgctgccgaggtgaagcgctgcaagaacatggagatcctg
tacgagtctcttcagctcgctcacaagtgtattctcaactctttctacggctacgtcatg
aggaaaggggcgcgctggtattccatggagatggctggcattgtgtgcttcaccggagcc
aacatcatcactcaagccagagagctgatcgaacaaatagggagaccactcgagttggac
accgatggtatctggtgtgtcctacctaacacctttcctgagaattttgtcgtgaagacg
agtaatgagaagaagcccaaggtgaccatctcctacccaggggccatgctgaacatcatg
gtgaaggagggattcaccaacgaccagtaccacgagctggtcgaccccgggtccctcacc
tacaacacccgggcagagaacagcatcttctttgaggtggatgggccgtacctggccatg
atcctgcccgcctcaaaagaggaaggaaagaagctgaagaagaggtacgctgtgtttaat
gaggacggctctgctgagctcaagggttttgaagtgaagagaagaggagagctccagctc
atcaagatatttcaatcctcagtgtttgaggctttcctcaaaggtaccactctggaggag
gtctacgcatcggtggccaaagtggccgactactggctggacgttctgtacagcaaggct
gccaacatgccagatgcggagctgtttgaactggtttccgagaatcgttccatgtccagg
aagctggaggactacggagagcagaagtccacgtcgatcagcaccgctaagagactcgct
gagttcctgggagaccagatggtgaaagacgctggtctgagctgtcgctacgtcatctcc
cgaaaaccagagggttcacctgtcacagaaagagccattcctctcgccatcttccaggca
gagcccagtgtgaagaaacatttcctccgtaagtggttgaagatgtccagcctgcacgac
ttggacatccgctctatcctggattggagttattacatagagaggttgggtagtgccatt
cagaaaatcatcaccatccctgcagctctgcaacaggtgaagaacccagtgcccagagtg
agacatcccgactggcttcacaagaaactcctggagaaaaacgacatttacaagcaaaag
aaaatcagtgaactgttcaccagtgagggcaagagacaggtggcccatcagcctcttgaa
gcaggccaagctgcggacatagaggacttcgggcggccagccagacccctgcagccggcc
atcctcatcagcaccaagcggaagcgagcttcccagggagaggaaagccaggtggagtct
caggtcctggagctcacccagtcctggcgagagatcctgggaccacccccacccatggga
gaggcacaggaggagcttttggtgtggctgcgctaccacaagaagaagtgggagctgcag
ctgaggcagaggaaggagagaaagaagaggaggaggatgctggatggtgaagctcagcct
gtaggtggaggagtgatcagagacggccccaccaccggccttggcagcttcctgcgcaga
acagcccgcagcattctggacatgccctggcagattgtgcagatcgcagagacgagtcac
cctggcctgtacaagttgtgggctgtgattggtaatgacctccactgcatgaagctcaac
atcccccgtgtcttctacgtcaatcagaaagtccccaaacaagaggagggagccatgtac
aagaaggtgaaccgcatgctgcctcgctccaacattgtgtactacctctatgagtactgt
gtaccagaggacatgtaccaggagcacatcaaccagatcaacgcagacctgtcggcacca
gacatcgaaggagtctacgaaacacaggtccccttgctgtttcgggctctggtgcagctt
ggatgtgtgtgtatggtcaataaacacatagtgagggatctggccggcagggaggcggac
acttttgatctggagcatctggagatgaggtctctggcccagttcagctacctggagcca
gggagtgttcgccatatgtacttctatcatcacagccagggacacaaggctctgtttgga
cttttcatcccctctcagcgcaaagccagcatcttcatcttggacacagtgcgaagcaac
cagatgccaaacctgaataacctttacactgcagagcgcaccgccctcctggagaagacg
acagaggatctcctgcctccagagaaacacaacttcgaggttcgagctgaaagcgaccca
aaggctatttaccgcgcactgcagcgcattctgctcaactacaaggaggaacgtcgtggg
cccaccctcatcgctgtgcagtcaaactgggagctgcgtcgattgtcagcggggatgccg
gtgcttgaggagtttcctgtcgttccagtgcatgtgctcgacgagatcagttataacgtg
ctggattggcaacggcacggtgcccggcgcatgatccgtcactacctcaacctggacagc
tgcctgtcgcaagctttcgacatggccaggtattaccacttgcctgtggggaacttgcct
caggatgtgtccatcttcggttcagacttgttcctggcgagacatcttcggaaacacaac
cacctcctgtggctgtcacctacagccagacctgacctcgggggaaaggaggctgatgac
agccgtctggtcatggaaagcgacgacagaggttctgtggagatcaactctcaaggatgc
tattccaccgtttgtgtggagatggacctgcagagcctggcagtgaacaccctcctccag
tcgcagcatgtcaacgacatggagggtggagccagtctgggcgtcagtttcgatgtgatc
cagcaggcctcgctggaggacatgatgtcaggaaatcagggggcaagcgctcatgctagc
tatgatgagactgctctctgctccaacaccttcaggatcttgaagagcatggtggtggga
tgggtcagggagatcactcagtaccacaacgtatacgccgacaaccaggtgatgcacttc
taccgctggctgcactccccgagttctctgctctatgaccctgctctgcatcgcaccctg
cacaacatgatgaagaaggtgtttctacagttggttgcagagtttaaacgtcttggctca
actgtggtgtacggaaacttcaacaggatcatcctgtgtactaaaaaacggaggacagat
gatgcaatcggctacgtggggtatatcactaacagcatccactccagagaaatcttccac
tctttgtccttgtccttctcccgctgctgggagtttctgatgtggatggacccggccaac
tacggcggcgtgaaggggaaactgccctccaacctcttgcctggagaggaaggagccaaa
cagaagaaaaataaacgaggggagggtgaagaggacggcagcgaggatgaagatgaggag
gaagcagaagttgaggaagatgaagagacggatgaggtggaggagctgatcgagagcaac
tggaacatcatgcagtacctgcctcaaactgcctcctgtcagaaatacttcctcatgatc
gtctcagcctacattgcagctgtgtaccacagtatgaaagaggagctgagacgtaatgct
cctggagcaacgccagttaagagacgtggaggcagccaggcttcccaacaggcagtggga
gacctgagtgctcttcctggaatgatctccttctcccaggaatacgtgtccagtgagctg
acacagaacttcttcaccatcactcaaaaaatccagaagaaagtgatgggcaccaggagt
gtgacgcagccctcagagctgttccctgtcctgcctggatcccacctgccactcaaaaac
ccagcactggagttcatcaaatatgtctgccaggtcctctcactggacgccaacatagcg
aaccaggtgaacaagctgaagagggacctcctgcgtcttgtggacgtcggcgagttttca
gacgacgctcagttccgtgatccctgcaactcctacatcctaccagaggtcatctgccac
cagtgcaatttctgtcgtgacctcgacctctgcaaggacccatctgtggcgcaggacggg
tctgtcttgcctcagtggttctgctccaactgccaggcccagtacgagaccgagtctgta
gagatggctctggtagaagctctgcagaagaagctgatgagctacaccctgcaggacctg
gtgtgtaacaaatgtaaaggcgtgaaggacgcaaacatgcccctctactgcagatgtgcc
ggagactttgacctcactttctcaatcaagagcttctccgagcagatcacggtgtttcag
aacatagcgtcccactacaacatgagcttcctggaggagaccattgactggctgctcctg
atgaatccacaggtccgacagagctctcgctga
DBGET
integrated database retrieval system
