Hippoglossus stenolepis (Pacific halibut): 118115914
Help
Entry
118115914 CDS
T08308
Symbol
lrfn5a
Name
(RefSeq) leucine-rich repeat and fibronectin type-III domain-containing protein 5
KO
K16358
leucine-rich repeat and fibronectin type-III domain-containing protein 5
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04517
IgSF CAM signaling
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04517 IgSF CAM signaling
118115914 (lrfn5a)
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04515 Cell adhesion molecules [BR:
hsp04515
]
118115914 (lrfn5a)
04990 Domain-containing proteins not elsewhere classified [BR:
hsp04990
]
118115914 (lrfn5a)
Cell adhesion molecules [BR:
hsp04515
]
Immunoglobulin superfamily
SALM family
118115914 (lrfn5a)
Domain-containing proteins not elsewhere classified [BR:
hsp04990
]
Fibronectin (FN) domain-containing proteins
Fibronectin type III domain-containing proteins
118115914 (lrfn5a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LRR_8
LRR_5
Ig_3
I-set
LRR_4
LRR_1
ig
LRR_9
Ig_2
C2-set_2
fn3
FN3_DSCAM-DSCAML_C
C2-set_3
Motif
Other DBs
NCBI-GeneID:
118115914
NCBI-ProteinID:
XP_035023027
LinkDB
All DBs
Position
10:21455126..21586286
Genome browser
AA seq
876 aa
AA seq
DB search
MERLLLCVMLAVAMAVRAQICPKRCVCQILSPNLATLCAKKGLLFVPPNVDRHTVELRLA
DNFVTSVKRKDFANMTRLVDLTLSRNTISFITPHAFADLENLRALHLNSNRLTRIGNDTF
SGMSKLHHLILNNNQLMVIHQGAFNDLLALEELDLSYNNLDSIPWEAIQRMTSLHTLSLD
HNMLDYIPEGTFSLLQKLNRLDVTSNKLQKLPPDPLFQRAQVLATSGFMTSTSFALSFGG
NPLHCNCELLWLRRLNREDDLETCASPQHLAGRYFWSVPEEEFLCEPPLITRFSHEMRVL
EGQRVALRCKARGDPEPAIHWISPEGKLVSNSSRTLVYSNGTLDIIISTVKDTGSFTCIS
SNPAGEAHQTVDLVIIKLPHISNNTNNIQEPDPGSSDISTSSRGGANGSNVTGDVKGGVD
KRVVTAEATSSTALIKFNFQRNIPGIRMFQIQYNGSQDDSLVYRMIPPSSKNFLVNNLAA
GTQYDLCVLAIYDDIITSLTATRVVGCVQFSTETEYMRCHFMQSQFLGGTMIIIIGGIIV
ASVLVFIIILMIRYKVCNPGEGGKGVSMSMTNVHSQTNGQQSQGCTVTPSVSKHGSIGLD
DLSGGTKKRSGAAGEGVGGKDTVTQLSDSSLPDCSTATSVLSQPWAARSPTAGVEEREKA
GEDRAQASALTPTGTTGSLPKPKRKPAPSKPVSVCSNTSAVPENLASPRPASSSSSSTAC
SVLLPPSLGLENLNTNRNNSTSLNQTPPPFAPTPFSSSLNTPSPVPSIRFRETPILRRAP
RASSTTTTTSSSAKYQTLPVEEGGRSRARRRNSLSEGGSKTRSNPNSHQGGAAPKLGRIV
RNKRSQSMSGMLLLKDGDGDSDKGRCDSDWILESTV
NT seq
2631 nt
NT seq
+upstream
nt +downstream
nt
atggagaggctgttgctgtgtgtgatgctggcggttgccatggcggtgcgggcacagatc
tgcccaaagcgctgcgtgtgtcagatcctgtcgcccaacctggcaaccctgtgtgccaag
aaaggcctcctgtttgtaccgcccaacgttgataggcacacagtggagctccggctggct
gacaactttgtcaccagtgtgaagaggaaagactttgcaaacatgacacgactggtcgac
ctcacattatccagaaacaccatctccttcatcacacctcatgcctttgctgatctggaa
aacctcagagccctacacctcaacagtaaccgcctgacgaggataggcaacgacacgttc
agcgggatgtcgaagctccaccacctgattctgaacaacaaccagctgatggtgatccac
cagggagcgttcaacgacctgctggcgctggaagaactggacctgagttacaataatctg
gactctattccttgggaagccatccagagaatgacgagcctccacacgctgagtttagac
cacaacatgttggactatattcctgagggaaccttctcgctgctacagaaactcaaccgg
ctggacgtcacctcaaacaaactgcaaaagcttccaccggaccctcttttccaacgagca
caggtcctggccacgtcggggttcatgacgtccacttctttcgcgctgtcattcggtggg
aaccctctccactgcaactgtgagttactgtggctgaggaggttgaacagggaggacgac
ctggagacgtgcgcctcaccgcagcacctcgctggtcgatacttctggtccgtccccgag
gaggagttcctgtgtgagccccccctcatcaccagattctcccatgagatgagggtgctc
gaagggcagcgagtcgcactaaggtgtaaggcaagaggcgatccggagccagccatccac
tggatctctccagagggcaagctggtgtccaactcctccagaacgttggtgtactccaac
gggaccctggacatcatcatcagtactgtgaaagacactggctccttcacctgcatctcc
tctaaccccgccggtgaggcccaccaaacggtcgacctggtcattatcaaactcccgcat
atctccaacaacaccaacaacatccaggaaccggacccaggatcttcagacatttccacg
tcgagccggggcggggccaacgggagcaacgtgacgggcgacgtgaagggcggggtggac
aagagggtggtgacggccgaggccacgtcgtcgacagcgctgattaagttcaacttccag
aggaatattccgggcatcaggatgttccagatacagtacaatggaagccaggacgactcg
ctggtgtacagaatgatccccccatcgagcaagaacttcctggtcaacaacctggcagca
gggacccagtacgacctctgcgtgctggccatctacgatgacatcatcacctccctgacg
gcaacacgagtggtcggctgtgtgcagttcagcactgagacggagtacatgaggtgtcat
ttcatgcagtcgcagttcctcggcgggaccatgatcatcatcataggagggataatagtg
gcctcggtgctcgttttcatcatcatcctgatgatacggtacaaggtgtgtaaccctggc
gagggtggaaaaggtgtttctatgtctatgaccaacgtccactcacagaccaacgggcag
cagtcgcagggatgcactgtgactcccagcgtctctaaacacggctcaatcggattagac
gacctctctggaggcacaaagaaaaggagcggagcagcaggagaaggagtcggaggcaaa
gatacagtgactcagttgtccgactcctccctgcctgactgctccacggccacgtcagtt
ctcagccagccttgggcggccagaagcccgactgcaggagttgaggaacgggagaaagca
ggtgaagatcgagctcaagctagcgccttgacgccaaccggcaccactggttctctgccc
aagccaaagcggaagcccgctccgagtaagccggtctcggtttgctcgaatacctcggct
gtccctgaaaatcttgcctcccctcgacctgcctcctcctcctcctcctccactgcttgc
tctgtgctcctccctccctccctcggtctggagaacctcaacaccaaccgcaacaactcc
acctccctcaaccaaaccccacctccctttgcccctacccctttctccagctctctcaac
acgccgagccccgtcccttcaataagattcagagagacacccattctgcgtcgggctcca
cgcgcctcctccaccaccaccacaacttcctcctccgccaagtaccagactctccctgtt
gaggagggagggaggagcagggcaaggaggaggaattctctcagtgaaggaggctcaaag
actcgatctaaccctaactcccatcagggaggagcagcacccaagttgggccgcatagtg
cgtaacaaaaggagccaatcaatgagcgggatgctgctccttaaagatggggatggagac
tcggacaaagggcggtgtgattcagactggatcttagaaagcacagtttga
DBGET
integrated database retrieval system
