Hippoglossus stenolepis (Pacific halibut): 118115967
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Entry
118115967 CDS
T08308
Symbol
srrm1
Name
(RefSeq) serine/arginine repetitive matrix protein 1 isoform X1
KO
K13171
serine/arginine repetitive matrix protein 1
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03013
Nucleocytoplasmic transport
hsp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
118115967 (srrm1)
03015 mRNA surveillance pathway
118115967 (srrm1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsp03019
]
118115967 (srrm1)
03041 Spliceosome [BR:
hsp03041
]
118115967 (srrm1)
Messenger RNA biogenesis [BR:
hsp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
118115967 (srrm1)
Spliceosome [BR:
hsp03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
SR-related proteins
118115967 (srrm1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PWI
DUF2457
Motif
Other DBs
NCBI-GeneID:
118115967
NCBI-ProteinID:
XP_035023110
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All DBs
Position
10:17473713..17483947
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AA seq
865 aa
AA seq
DB search
MDAGFFRGTSAEQDNRFSNKHKKLLKQLKFAECLDKKVDMTKVNLEVIKPWITQRVTEIL
GFEDDVVIEFIFNQLDEKHPDSKMMQINLTGFLNGKNAREFMRDLWPLLLSAQDNIAGIP
SAFLEQKKEEIKQRQIEQEKLASLKKVDDDKKEKEKENRERAQSKSPRRRKTRSPSPRRR
SPVKRDRKPSPSRSPRRKSSPVGGTSPPPPLMQLPTKPLEQLVEPDTSGRSMPEAVVQEA
SSTCDTVLEVVKADSVMEVKEPSPEKILKKEERPRSREREKDTRRERPHHRSRSHSRTRR
RRSRSRSFSPRRRPSPRRRMSPRRRSPPRRGPPSSRHRHRRSPVRRRRSRSASSSGSSSA
HSGSPKKVMKRISSTPPRKQLQHRDTSISPAGKERRSPSPRGRRGRGSASPPRSSGLKRK
PGGRGDSPPDNAKARHSDGSESEEDKNDKGATADSVQQRRQYRRQNRQSSSDTGSSSSED
EGPKRPTAGPAARNGEVRRRRSRTPSPRRRHRDPSPRKRRSPSPTRRRRSPSPPRRRRSP
SPPRRRSPSPPPRRRSPSPRRYSPPIQRRYSPSPLPPQKRKMSSSPAKRSSPGGKRRPSR
SPKRRSSPAPRRRTPPTSSPSRHRRSPMLTSGWQSRDTRSPPAAANRLSPSPVKRGRAVR
DSPSPQGCFKTSSSSPSNQRRQQSPSHGGKPIRRVSRTPEPRSNQRPSPIPQPMRRASSR
SRSVSPQPAAQKRPAPASASPSPSRSASGSPPPAKKASSGSGSQSPSKNSDIDGSLKKKK
KKKEKKHKKEKKHKKHKKHKKEKSGAPGAGEGQENQGVEEDGDSRKESESEVDDSLDDLE
KHLREKALRSMREKGKTQISPSQMS
NT seq
2598 nt
NT seq
+upstream
nt +downstream
nt
atggacgcgggatttttccgcggcacaagtgcggagcaagacaaccgtttcagcaacaag
cacaagaaactgctgaagcagctgaaatttgcagaatgtctggacaagaaggtggacatg
accaaagtgaacctggaggtcatcaaaccctggattacacaaagagtgacagagattctg
gggttcgaggatgacgtcgtcatagagttcatatttaaccagcttgatgaaaagcaccca
gatagtaagatgatgcagatcaacctgacaggcttcctgaatgggaagaacgcccgggag
ttcatgagggacctgtggcccctgctgttgagtgcccaggacaacatcgctggcataccc
tctgcttttctggaacagaagaaagaggaaattaaacagagacagattgaacaggagaag
ttggcttctcttaagaaggtggatgatgataagaaggaaaaggagaaagaaaacagagag
agggctcagtcaaagagtccaagaaggcggaagacaaggtcaccatcaccacgacgaaga
tcgccagtgaagcgcgacaggaaacctagcccctcacgctccccacgtcgcaaatccagc
ccagttggtggcacttctccccctccacccctgatgcagctgcccacgaaacctttagag
cagcttgtggagccagatacatcaggaaggtcaatgccagaagcagtggtccaagaagct
tcatccacctgtgacacagttttggaggtggtgaaagcagactcagtgatggaagtcaaa
gaaccctcccctgagaaaattctgaagaaagaggaaagaccgcggtctcgggaaagagag
aaggacaccagacgggaaaggcctcatcaccgctcccgctctcattcccgcactcgcaga
cgacgctcccgttccagatctttttcccctcgccgaaggccgagtcctaggaggagaatg
tctcctcgtcgaaggagtcctccccgacgtggtccccccagctccagacacagacacagg
cgctccccagtccgtaggaggcgctctcgctctgcttcatcctccggcagcagctctgca
cactctggctctcctaaaaaagtgatgaaaagaatatctagcacaccacctcgaaaacag
ctgcaacatcgggacacatccattagccctgcagggaaggaaagacgctcaccatctccc
agggggagaagaggacggggttcagcttctccacccagatcatctggtttaaagcgaaaa
ccaggaggaagaggggattctccgcctgataacgccaaggccagacattctgatggttct
gagtccgaagaggataaaaatgacaaaggggcaacagcagattcggtgcagcagcgacgt
cagtatcgcaggcagaatcgacagtcgtcttcagataccgggtcttcctcctcagaagat
gaagggccaaaaaggccaacagcagggccagctgccagaaacggtgaagtcaggaggaga
cgaagccgtacaccttctccaaggaggcgacacagggatccatctccaaggaaaagacgt
tctccatctcctacacggcgacgtcgctccccttctcccccacgacgccgaagatctccc
tctcctcctagacgcaggtctccttctccaccacctcgccgccgatctccatcccctcga
cgttattctccccctatccagcgccgctacagcccctcacctttgcctccacagaagagg
aagatgtctagctctcctgcaaagcgctcttccccaggaggcaagcgacgtccctccagg
tctcccaagcgcagaagttctcctgctccaaggagacgcacacctccaacctcatcacct
tcccgacacaggaggagccctatgttgacttctggctggcaaagcagagatacacgttcc
cctcctgcagcagcaaaccgcctgtccccatccccagtaaagcgcggtcgtgctgtcaga
gattcccctagcccccagggatgcttcaaaacctccagctcatctccatctaaccagcgg
agacaacagtccccttcacacggcggcaaacccatccgcagagtgtcccgcaccccagag
ccacgcagcaatcagagaccctctcccatcccccagcctatgaggagagcatcttccaga
tcgagatctgtttcccctcaaccagcagctcaaaaacgtccagccccagcatctgcctcc
ccctcaccgtcacgctctgccagtggctccccaccaccagccaaaaaggccagcagtgga
tccggcagtcagtccccaagcaagaactctgacattgatggcagcttaaagaaaaagaag
aagaagaaggagaaaaaacacaaaaaggagaagaaacacaagaagcacaagaagcataag
aaggagaagagcggtgcccctggtgctggagaaggacaagaaaaccagggtgtggaggag
gatggagattcaaggaaggaatcggagagtgaagtagacgacagccttgacgacctggag
aagcacctaagagagaaggccttgcgctccatgagggagaaggggaagacccagatatct
ccatcacaaatgtcctga
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