Hippoglossus stenolepis (Pacific halibut): 118116023
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Entry
118116023 CDS
T08308
Name
(RefSeq) paired amphipathic helix protein Sin3a isoform X1
KO
K11644
paired amphipathic helix protein Sin3a
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04350
TGF-beta signaling pathway
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09130 Environmental Information Processing
09132 Signal transduction
04350 TGF-beta signaling pathway
118116023
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
hsp03036
]
118116023
Chromosome and associated proteins [BR:
hsp03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
Sin3A-HDAC complex
118116023
REST complex
118116023
Heterochromatin formation proteins
Other heterochromatin formation proteins
118116023
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sin3a_C
PAH
Sin3_corepress
PAH_ZNF598
HHD_RTEL1
Motif
Other DBs
NCBI-GeneID:
118116023
NCBI-ProteinID:
XP_035023256
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Position
1:5954934..5971509
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AA seq
1294 aa
AA seq
DB search
MKRRVEDQEPIFAPQQQQSRRPPVQGIAESFQHRALAPAPTVIEAATDTMQPSTGIQYSL
PQGYQVPTMPQSTSGHGHNTAPHVGPHTHSLAVQSQGPAVVQGHVHPPAPITSPQGQQQF
QRLKVEDALSYLDQVKLQFGNYPQVYNDFLDIMKEFKSQSIDTPGVINRVSQLFKGHPDL
IMGFNTFLPPGYKIEIQTNDLVNVTTPGQIHYITPHGISVQSMPIGPASSQPVSHHQHQS
LPQAGPQTTTATTTTTPPVPAQPTPNKTSKPIQSPAHTPTSQPNPSIPSYASPRSPTVQP
HTPVSSTPSGGPPLQNNQPVEFNHAINYVNKIKNRFQGQPDIYKSFLEILHTYQKEQRNA
KEAGGNYTPTLTEQEVYTQVAKLFKNQEDLLSEFGQFLPDANSSMLLGKTAPDRAESVRN
DHGGTVKRPLLNNKQRLSQNGLPIRRPAGVGATPPVKKKPKIMGKDHSMSEVSKHSTSTE
TMFFEKVKKALRSTEAYDNFLRCLHIFNQEVISRAELVQLVIPFLGKFPELFTWFKNFLG
YREFSHGEPSHAESLPKERAMEGIAMEIDYGSCKRLGSSYRALPKSYQQPKCTGRTPLCR
EVLNDTWVSFPSWSEDSTFVSSKKTQYEEHIYRCEDERFELDVVLETNLSTIRALESVQR
KLSRMSAEEQLRFKLDNTMGGSSEVIHRKAIQRIYGDKANDIIDGLKKNPAASVPIVLKR
LKIKEEEWREAQRGFNKIWQEQNEKYYLKSLDHQGVNFKQNDTKVLRSKTLLNEIELLYD
DRQERAVEEAPAPPLSGPHMTLTYDDSQILEDAAALIIHHVKRQVGIQKEDKYKIKQIIH
HFIPDLLFAQRGELSDVEDEDEEEEEDLEMDQDSPKKHNGLPGSSPSKSKLLFSNPAAQK
LRGTDEAYNLFFVNNYWYIFLRLHHILCSRLLRIYGQAEKQIEEDAREREWEREVLGVKR
EKSENPAIQLKMKEPMDIDVDDYYSVFLEMVRNLLDGNMEPAQYEDSLREMFTIHAYVAF
TMDKLIQSIVRQLQHLVTDDVCARVTDMYLSECANKATGGTLSTQTSRSTAEGVYQRKAE
QLMSDENSFKLMFVKSRGSLSMTMELLDTEDDNSDEPAEAERWSDYVSRYLNSDSASPEL
REHLAQKPVFLPRNLRQIRKCQRGWKQLQQERKTKAPSDTSQDGNSALKMQCMFKLNSYK
MVYVCKSEDYMYRHTALTRAHQSHQTVNRRLHRRFQAKVDTWAKEHVTSDMATDSQKWLM
GEEQEDLLSCTTTRCPEVLHYLDVNKYRVKYRTL
NT seq
3885 nt
NT seq
+upstream
nt +downstream
nt
atgaagaggcgcgtggaggaccaggaaccaatatttgcaccccagcaacagcaatcacgt
cgtcccccagttcaaggtattgcagagagcttccagcaccgggccctcgccccggcccct
actgtgatagaggcagccacagacaccatgcagccatccaccggcatccagtattctctc
ccccagggctaccaggtgcccacaatgccccagagcacaagtggacatggacacaacact
gcaccacatgttggtccccacacacacagtctggcagttcagtcccagggtcctgcagtg
gtccaaggccacgttcatccacccgcacccataacctctcctcaaggacagcagcagttt
cagcgactgaaggttgaagacgccttgtcctatctggatcaagtgaagctgcagtttggg
aattatccacaggtttataatgattttcttgacatcatgaaagagtttaagtcacagagc
attgacactcctggagtcatcaaccgcgtgtcccagctcttcaagggtcacccggacctc
attatgggttttaacactttcctgccccctggatacaagattgagattcaaaccaacgat
ctggtcaatgtgaccacgccgggtcagatccactacatcaccccgcatggtatttctgtt
cagagcatgcctataggtccagcatccagccaacctgtaagccatcaccagcaccagagt
ctgccacaggctggcccacagactaccaccgccaccaccacaaccaccccacccgtccca
gcccaacctactccaaataaaaccagcaagccaattcagtctccagcccatacacccacg
agccagcccaatccatccatcccatcctatgcctcaccgcgctcaccaactgttcagccc
cacactcctgtgagcagcacgccgtctggggggccaccgctccagaacaaccagcctgtg
gagttcaaccatgctataaactatgtcaacaagatcaagaaccgcttccagggtcagcca
gacatctacaaatccttcctggaaatccttcacacataccagaaggagcaaagaaatgct
aaagaggcaggaggtaactacacccccacactgactgagcaggaggtctacactcaggtg
gcaaagctcttcaagaaccaggaggacctgctctcggagtttggacagttcctgcctgac
gcaaacagctcaatgctgctgggcaagactgcaccagacagggctgagtctgtgcgtaat
gatcatggtgggacagtaaagagacccttactgaacaacaaacaaaggctgagccagaac
ggcctccccatcagaagaccagccggagtgggagccacaccgcctgtcaagaagaaaccc
aaaataatggggaaggaccacagcatgagtgaagtcagcaaacacagcaccagcactgaa
accatgttctttgagaaggtgaagaaggctcttcggagcacagaggcgtacgacaacttc
ctccgctgtctgcatatcttcaaccaggaagtcatttctcgcgctgagctggtccagtta
gtcatcccattccttggaaaattcccagagctctttacttggtttaaaaacttcctgggc
taccgcgagttcagtcacggggagccgagccatgcagagagtttacccaaggagcgtgcg
atggagggcatcgccatggagattgactacggttcctgcaagaggctggggtccagttat
agagcactgcccaagagctaccagcagccaaagtgcacaggacggacgccgctgtgcaga
gaggttctgaatgacacatgggtgtcgtttccatcgtggtctgaggattctacatttgtg
agctccaagaagactcaatatgaggagcacatttacagatgtgaggatgagcgctttgag
ctggatgttgtgttggagaccaacctttccacaatacgagccctggagtcggtgcagcgg
aagctttcacgcatgtcagctgaggagcagctgcgcttcaagctggacaacacgatgggc
ggctcctcagaggtcattcaccgcaaagctatccagaggatatatggggacaaggccaat
gacatcattgacgggcttaagaagaacccagctgcatctgtccccatagtgctgaaaagg
ttaaaaattaaggaggaggagtggagagaagcccagagaggattcaacaaaatctggcag
gagcagaatgaaaagtattacctgaagtcactggaccatcaaggcgtcaacttcaagcag
aatgacaccaaagtgctgcgttcaaagactttgctcaatgaaattgagttgctatatgat
gatcgtcaggagcgagcggtcgaggaagcccccgcacctccactgagcggcccgcacatg
accctgacctatgacgacagccagatcctggaagatgctgctgccctcatcatccaccat
gtcaaacgacaggtgggcatccagaaagaagacaagtacaagatcaaacagatcatccac
cacttcatcccggacctgctgttcgcacagcgaggtgagctctcggatgtagaggacgag
gacgaagaggaggaagaagacttggagatggatcaagacagccccaagaagcacaacggc
ttgccgggcagcagcccatcaaagtcgaagctcctcttcagcaacccggcagctcagaag
ctgcgcggcacagacgaggcctataacctgttcttcgtgaacaactactggtatatcttc
cttcgtctacaccacatcctctgttctcgtttgctgcgaatctacgggcaagccgagaag
cagattgaagaggacgcccgcgagcgagagtgggagagagaagtgttgggggtcaaaagg
gagaaaagtgaaaacccagcaatccaactgaaaatgaaggagccaatggatattgatgta
gacgactactactctgtgtttctggaaatggtgcgcaaccttttggatggaaacatggag
ccggctcagtatgaggactccttgagggaaatgtttactatccatgcctacgttgccttc
accatggataagctcatccaaagcattgtccggcagctccagcacctcgtcactgatgac
gtatgcgcacgtgtaacagacatgtacctgagtgaatgtgccaataaagcgacgggcggc
acgctgtccacgcagacgtccaggtccacagcagagggcgtctaccagcgcaaggcagag
cagctaatgtcggatgagaacagcttcaagctgatgtttgtaaagagtcgaggatctctc
agcatgaccatggagctgctggacacagaagacgacaactccgatgagccagcggaggca
gagaggtggtcagactacgtgagtagatacctgaactcagactctgcgtccccagagctg
cgtgaacatctggcccagaagccggtgttcctccccaggaatttgaggcagataaggaag
tgccagagaggatggaagcagctgcagcaggagagaaagaccaaggccccctcggacacg
tcgcaggacggtaacagtgcgctgaagatgcagtgcatgttcaagctcaactcctacaag
atggtgtatgtctgcaagtcagaggattatatgtacaggcacacggctctcacacgggcc
catcagtctcatcagacagtgaacaggcgcctgcacagacgcttccaggccaaagtggac
acctgggccaaagagcacgtcaccagcgacatggccaccgacagccagaagtggctgatg
ggagaagaacaagaagacctgttgtcctgcaccaccacccgctgcccggaggtcctccat
tatctcgacgttaacaagtaccgggtgaagtacagaactctgtag
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