Hippoglossus stenolepis (Pacific halibut): 118116330
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Entry
118116330 CDS
T08308
Symbol
scaf8
Name
(RefSeq) SR-related and CTD-associated factor 8 isoform X1
KO
K13191
RNA-binding protein 16
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hsp03021
]
118116330 (scaf8)
03041 Spliceosome [BR:
hsp03041
]
118116330 (scaf8)
Transcription machinery [BR:
hsp03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
118116330 (scaf8)
Spliceosome [BR:
hsp03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA binding proteins (RBPs)
118116330 (scaf8)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CID
RRM_1
Transformer
DUF3525
RRM_occluded
Motif
Other DBs
NCBI-GeneID:
118116330
NCBI-ProteinID:
XP_035023860
LinkDB
All DBs
Position
10:complement(16800660..16828151)
Genome browser
AA seq
1413 aa
AA seq
DB search
MEAVKAFNNELYSLNEYKPPISKAKMTQITKSGIKAIKFYKHVVQSVEKFVQKCKPEYKV
PGLYVIDSIVRQSRHQFGTEKDVFAPRFSKNIIPTFQHLYRCPSDDKSKIVRVLNLWQKN
AVFKSDIIQPLLDMAAGIAPPSVTPVMSSSAAAVNNATPGTPATPATPANLVQGLPDWAS
QINNTDTVAAVAQILQSPQGQQLQQLVQSLQMQQQKPQPSLLQALDAGLVVQLQALTAQL
TAAATANSLNPLEQRVSSFNKKLLGPFDFGNDSERGEESKKDSSSSQLPMVSEPINSSLF
HQLAEQLQQQNLEQFQKQLMEHQQKAMSIEGQDSIFGQENSAATAQSISQPQLPDSDNKM
DDSIDNQQQDMDMDLDEGPDGMEEESFEAEEKKAVSTRSRTRSRSRSRSPKRRRSRSRSG
SRKRKHRKRSRSRSRDRKRKSSRSYSSERRAREREKERQKKGLPPIRSKTLSVCSTTLWV
GQVDKKATQQDLTNLFEEFGQIESINMIPPRGCAYICMVHRQDAFRARQKLSTGSFKIGS
KVIKIAWALNKGVKQEYKQFWDVDLGVTYIPWEKVKLDDLDDFAEGGIIDQETVNDEWET
AKNAEPVKEVTSQQVIAETTAVSNSQTEAYNQQVTMMPVQLPVPQAVPSAVGLVPPSFPV
PMGIPPPGYGPPPPFLRAGFNAAQPPPGFLQAAQAAGMASATSSLLQPSVATGQDAVKDS
LFGAMIPQTSTIPGSFMPSALPGAGVFNPVGVQTQISHEKTGQSAEGLDAAAELTLQGMQ
NAVRSGMGLLGMHPSASLTHPLHQSGLAGQRMPGLLPLDVRPNLLQPGAAARFPLLLQHG
PTQQAVGLLESSLQAQARARAPFSQLDPFNRAPNLANENVSKTEDKSSSNADEGKDQDYR
FPPMEKPSTGLLRTPPPDHRETLGGGAAGGAAGRPPLLQTPGTQPARTSLVGRLQALAGF
TPDNRWNQTRGDFDERDGMRGAPQAPGGPKGFQEERPTPGQSFPNRFDSRPGAAGGAGVP
ANAGAAGGPQAWNRSSSTTAPFDSELHQDLDDRRRQWDRQRDRDERDFDFRREMNGYRHS
HSRERERDRDRERERERDKEKDRENQRERERGGWTPLLPLPTPLLPTPPLNPNLTLNQGK
LLAPLKLNPQLQQRFQSPLLPQAQGKPPLMGLNQPLPQVQIKTPPPSQSHADTAEGQSET
PASSESPQAQSPPSAQSPEPSPDDNIGQSPLSDAPIQAKSPPQSETPPLSESESESLSHT
TAQSPSKTTASPETESPNQALPLVDASPQYSPVAFTQAVSPPEEPTHSVEEQESPQKSEE
EEEEEEEEESQDSASSSQPQWVNGPGMDNMDVADPTPEGSPEPTSEPTSESVHSESEAEQ
LASPKDVDNEQSEPMEEAASQPVVDTVTDTEGT
NT seq
4242 nt
NT seq
+upstream
nt +downstream
nt
atggaggccgtcaaagccttcaacaatgagctgtactcgctcaacgagtacaagccgccc
atctccaaggccaagatgactcagatcaccaagtctggaatcaaagctataaaattctac
aaacacgttgtccagagtgtagaaaagttcgtacaaaagtgcaaaccggaatacaaggtt
ccggggctgtacgtcatcgactccattgtcaggcagtcacgacaccagtttggcacggag
aaggatgtttttgccccacgcttcagcaagaatatcatccctacgttccagcacctctac
cgctgcccttcagatgataagagtaaaattgtgcgagtgctcaacctttggcaaaagaat
gctgtcttcaagagtgacatcatccagcctctattggacatggcagcagggattgctccg
ccgagtgtcacccctgtcatgtcaagcagcgctgccgcggtcaataacgctacacctggc
accccagctaccccagcaaccccagccaacttagtccagggtctgccagactgggcctct
cagattaacaacacagacactgtggctgctgtggcacagatcctacagagtccccaggga
caacagctgcagcagttggtacagagtctgcagatgcagcaacagaaaccccagccatcc
ctgctgcaggccttggatgccggcctagtggtgcagttgcaagctctgactgcacaactc
actgcggcggctactgccaacagcctcaaccccctggagcagagggtctcctcctttaat
aaaaaacttttgggtccatttgactttgggaatgattctgaacgtggcgaggaatctaaa
aaggactcctcatcatctcaactacctatggtgtccgagccgatcaacagctccctcttc
caccagttggcggagcaactgcaacaacagaacctggagcagtttcaaaagcagcttatg
gagcaccagcagaaggccatgagcatagaagggcaggattcaatatttgggcaggagaac
tctgctgcgactgctcaaagcatcagccagccacagcttcctgattccgacaacaagatg
gacgactccatagacaaccaacagcaggacatggacatggacctggacgagggcccagat
ggaatggaggaggagagctttgaggcggaggagaagaaggctgttagcacacgctccaga
acacgctcaaggtcacgctctaggtctcccaagaggaggcgatctaggtcccgctctggc
tcacggaaacgtaagcaccgcaagcggtcacgctcacgctccagagatcgcaagaggaag
tcatcacggtcttactcgagcgagagacgcgcccgcgagcgagagaaggagcgacagaag
aaaggactgcctcccataagatccaagacactaagtgtttgcagcacaactctgtgggtg
ggccaggtggacaaaaaggccactcagcaagacctcaccaatctgtttgaagaatttggc
cagattgagtctataaatatgatccctcccagaggctgtgcctacatctgtatggtccac
agacaggacgcattccgcgcccgccagaagctcagcaccggctcctttaagatcggctcc
aaggtcatcaagattgcgtgggctctgaacaaaggggtaaagcaggagtacaagcagttt
tgggacgtggatctgggtgtcacctacataccctgggagaaggtgaagctggatgatcta
gacgactttgctgaaggaggaatcattgaccaggagaccgtcaatgatgagtgggaaaca
gccaagaatgctgagccagtgaaggaagttacgagtcagcaagtgatcgctgagacgacg
gctgtatcgaactctcagactgaggcatacaaccagcaggttaccatgatgcctgtacag
ctgccagttccccaggcggttcccagtgccgtgggtttggtaccccccagcttcccagtc
cccatgggtatacccccccctggctatgggccgccaccacccttcttaagagctggcttc
aatgctgcacagcctccgccaggttttctgcaggcagcacaggccgcaggcatggcctca
gctacttcttctctactgcagccttcagtggccacaggccaagatgctgtcaaggattct
ctgttcggcgctatgatccctcagaccagcaccattcccggcagcttcatgccctcagcc
ctccctggagccggtgtgttcaatccagtgggagtccaaactcaaatcagccatgagaaa
acgggtcagtctgcagagggactagatgccgctgcagagctcacacttcaaggcatgcaa
aatgcagtccggagtgggatgggtctccttggcatgcacccttcggcttccctcacacac
ccactgcatcagtctggtctcgcagggcagagaatgcccggcctgttgcctctagatgtg
cgacctaacctcctccagcctggggcggcagcccgcttcccactcctcctgcagcacggc
cccacccagcaagccgtgggcctcctcgaaagttctctccaggctcaagctcgtgccagg
gctcctttctctcagctggaccccttcaacagggccccaaatcttgccaatgaaaatgta
tccaagacagaagacaagtcttcctctaatgctgatgagggcaaagaccaggactatcgc
ttcccccctatggaaaagccgagcacgggcctgctgaggacccctccaccagaccatagg
gagacccttggaggtggagcagcaggcggagcagcaggcagacctcctttgctccagacc
ccggggactcagcccgccagaaccagcctagtgggacgactgcaggctctcgcaggcttc
actcctgataaccgctggaaccagaccagaggggactttgatgaacgagatgggatgcga
ggagccccacaggctcctggtggtccaaaaggcttccaggaggagcgccccacacctgga
caaagtttccccaaccgctttgacagccgtcctggggcagcaggaggggctggggttcct
gcaaatgctggtgctgctggtgggccacaggcctggaaccgaagtagtagcactacagcg
ccttttgatagcgaattacaccaagacttagacgaccgaagacgccagtgggacaggcaa
agagacagagacgaaagagattttgatttcaggagggagatgaatggttaccgccacagc
cacagccgagagagagaacgcgacagggacagggagagggagagagagcgtgacaaagag
aaagaccgtgagaatcaacgtgagcgtgaacgtgggggctggacaccgctccttcctctt
cctacacctctgcttccaactccacctcttaatcctaacctgaccttgaaccaaggtaaa
ctactggcaccactcaagttaaatccccagcttcagcaacgattccagtctccactcctg
cctcaagctcagggcaaaccccccctcatgggtctgaaccagccgctccctcaggttcag
atcaagactccccctccatcccagagccacgcagacacggccgagggccagtcagaaaca
ccagcttcgtctgagtcacctcaggcgcagtcgccaccctcagcccaatcacctgaacca
tcacctgatgataatataggtcagagccccttgtctgacgctcccattcaggccaagtca
ccgccacagtctgagacccctccactgtcagaatctgaatctgaatcactatcccacacc
acagcccagtccccctccaagaccactgcttctccagaaactgagagcccaaaccaagcc
ttacctttggttgatgcatcaccccagtactcacctgtggccttcacacaagctgtcagc
ccccccgaagagccgacccactctgtggaggagcaggaaagcccacagaagagtgaggag
gaggaggaggaggaggaggaagaggagtcacaagatagtgcctcctcaagtcaaccccag
tgggtcaacggacctgggatggacaatatggatgtggctgaccccacacccgagggctct
cctgagcccacttcagagcccacctctgagtctgtgcactctgaaagtgaagcggagcag
cttgcctctcctaaggacgtagacaatgaacagagtgagcccatggaggaagctgcgagt
cagccagtggtagacactgtcacagacactgaggggacataa
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