Hippoglossus stenolepis (Pacific halibut): 118116366
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Entry
118116366 CDS
T08308
Name
(RefSeq) AT-rich interactive domain-containing protein 1B
KO
K11653
AT-rich interactive domain-containing protein 1
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
118116366
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
hsp03000
]
118116366
03021 Transcription machinery [BR:
hsp03021
]
118116366
03036 Chromosome and associated proteins [BR:
hsp03036
]
118116366
Transcription factors [BR:
hsp03000
]
Eukaryotic type
Helix-turn-helix
ARID
118116366
Transcription machinery [BR:
hsp03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
118116366
Chromosome and associated proteins [BR:
hsp03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
118116366
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BAF250_C
ARID
Motif
Other DBs
NCBI-GeneID:
118116366
NCBI-ProteinID:
XP_035023933
LinkDB
All DBs
Position
10:complement(15994711..16170863)
Genome browser
AA seq
2296 aa
AA seq
DB search
MAAQVASAPTRTNNKNKKLSSGLGPELNSGKSGGGGGGGTVQRSGPMLGAGDGTLNNVDH
RRRNELNMVHSTSTTHGAPDGHDKDGNNLTSASASTNSTTSSMEAGLIANHKLKCVGSGD
PPQSQPLPQQQPPPQFGQFAPHQQRQIQSNNTANNNGQGPRGDRGMDHQHHGGKENLLGG
QGEPQQQQQQHMPGKGEGELTCKPAERMTSTRYDHSNLGPTSNNSEFNNNYYTPRPCYEQ
HGGQQQQSSGMGVTHSSAHNSMENSHEAGFHNNQYNQYPGYRASYGGGAYGMMGPSGCRQ
PGNMMMGSNSSTSHGKSPLGAGSGGFQRFPGQTQQQQPQPQPQQQQQQQHPSGATPTLNQ
LLTSPSPMMRGYGAAYQDYSGPTAQQQGAMGLGKDVGPQYGPASAHGWGGQQRNHPHSLS
PGNGGQGLGRTQVSSMDFMAMKRSQLYGMANNPYSTPQQPGGGPYPPSQPYTSPPPHRYP
MGMQGRGQMMGGMQYPQQQQVAPYGQQVMAGYGQQQQPGQQQQGTPPYFSPPQQTPPGPN
QSPYLQPRPPPQQEAQQESYNTRGPAPGNSGKANNEDGVSQDRPSSLPDLSGSIDDLPTG
TEAGLVSTVSAGGSSSSSSSSSQGEQGGASNQGQSPFSPHASPHLPSQRSGPSPSPVGSP
AGSTQSQHSRSGSGPISPASGPSANNAAPGSNVALQSSGNGPDGAHPPITRSPMAQERGF
MSNMQRNQAGSQFASPQSGPSMSPHPSPGGPLYPGMVPYSQSGPTGHYGPQGSQYGHQGN
YPRPSNYSGTASASYSGPGPNSLGMNATSPMHGQGPGQPIPVGRSHGPSNQNRVYPPMAP
SSPSMPQPAGPGMGPPSLGSSNRKVQDAGAAVVLGSANSTHNRQGSYPGPGISQASTMAT
TVPYSQPASNNSSAMGNAQGPAYMPPSGALAMSGDGMMSPDGKPKVDVKDDTGPVNEPPK
PKLQDGYSNNNSSSSSSQQCVSQPATPGGALPVPSPLSPSPASLSSYHGDDSDSISSPPW
PLKTPSSPKANPNASSLSGERITRLFELGVEPERRGWVERYLTFMEERGTAVSQLPTVGK
KPLDLWKLYLAVREIGGLAMVNKNKKWRELSTTLNVGTSSSSASALKKQYIQYLFAYECK
MERGEEPPADSSSSSGSGSGSGSGSSSMAGGENRKQVKIQPPSPANSGGSLQGPQTPQSS
GSSSTAEAAGDLKPPTPATTPLGQVTPLPPNRSSVSVQDPFSEVSDPAFVKRAASLPPSA
PYQQGLSMPDMMMRMQYDTKDPFAGMRKMAGADPYIPGQMPGGGLQDMYGRPPSSLSMSQ
RSQYPYGPGYDRRPDHVMGMEGSMGPPGSQNNLGPSNSEGSMYSASRYPSQQRHDGYGQQ
YPSMPYGMHPSGMYPQQQGYKRPMDGMYGPPPKRHESDMYAMQYGNQQPDMYNHYSGGYS
GPEHRGLQGQFPYPYPRDRIGPSGQSQHSLMGGGPTPNHAADGPNMWPSRTDLGYPYPNR
QGPPSQMPPYGSIGRDDMDGRPGQEQWHRQSPYLSSAGGMPPLSRQPSSYSNSPSMANHL
PRAPSPGAFQRSLDSRMSPSKMQFMSPMKMPKPGMAMMGSQGGGSMGQFPPNLRRDLNYP
PGSVEASMPILKPRRKLTSKETGTPEAWRVMMSLKSGLLAESTWALDTINILLYDDSTVA
SFILSQLPGFLELIVEHFRRCLIEIFGILEEFEVGTVAHKNFLDPPPNQKEEEPTPEQET
DSAVQPESESAPAVETQVEQTGGVTEEAPTVAAEPESAVVNGEKEECEASRKKEDKNKED
REKEGKEKEEGEKGAESKKESTEQPVTELQPKPQQASKYDKLPIKVVHKEDLIEDMTERL
GYITEFTSGLLHWQAGGGDSTAHIQTHFEPRIAPPARADEKTRKEDKQEQKMEDGKKQPL
KHITATIDDVLCARVDALSYAHPARSLPSYPFRVHPDGEQDHITLLEDEPRCLDEAPLST
ISAWQDSLSKRCLCVSNIVRSLSFIPGNDLDMSRHPALVLLLGRLLLLQHQHPERMRSPP
SYQRDEQREQGLSSSKEEWWWECLSLLRENALVTLANISGHLDLSTYSDTICLPILDGLL
HWMVCPSAEAQDPFPSAAPHSLLTPQRLVLECLCKLSIQDGNVDLLLATPPFSRQEKLFT
VLLRYVGQRKAQVYREMAVAVLSHLAQGDPTAARAIAMQKGSVGNFVGFLEDGVSMAQYQ
QNPHSLLHMGHPPLDPPSINMMCRAAKGLLAMAKVEENKTEFALYESRLLDISISSVLSA
GVVTIICQVLFHLGKL
NT seq
6891 nt
NT seq
+upstream
nt +downstream
nt
atggctgcgcaagtggcatcggctccgaccagaactaataacaaaaataagaaattatcc
agcggtctgggtccggagctcaattcggggaaatccggaggaggtggaggaggagggacc
gtgcagcgaagtggaccgatgctgggagccggagatgggactctgaataatgtagaccat
cgccgccgtaacgagctcaacatggtccattcaacttccacgactcacggcgcgccggac
ggccacgacaaggatgggaataacctcacgtccgcgtcggcgtcgactaattcaaccact
tcctcgatggaagcgggtttgatcgcaaaccacaagctgaaatgtgtggggagcggagat
ccccctcagtcccagccgctgcctcagcagcagccaccgccgcaatttggccaatttgcg
ccacatcagcagcgacagatccaaagtaacaacaccgccaataacaacggccaggggccc
cgtggagaccggggcatggatcaccagcaccacggtggcaaagagaacctgttggggggg
cagggggagccacagcagcagcagcagcagcacatgccaggtaaaggtgagggggagctc
acctgtaaacccgcggagaggatgacgagtaccaggtacgatcattctaacttagggcca
actagtaacaactccgagtttaacaacaactattacactccacggccctgttacgagcaa
catggcggacagcagcagcaaagcagtgggatgggggtaacgcactcctcggcacataac
agcatggagaattcccacgaagcagggttccacaacaaccagtacaaccagtacccgggg
taccgggcgagctacggcggcggggcctacgggatgatggggccctctgggtgccggcaa
cctgggaacatgatgatgggcagcaactcctcaacaagccacggcaagtctcccctggga
gcgggttcgggcggcttccagaggttcccgggacaaacccagcagcagcagccgcagccg
cagccgcagcagcagcagcagcagcagcatccctcaggggccaccccgaccctcaaccag
ctgctcacgtcccccagcccgatgatgcggggttatggcgctgcctatcaagactacagt
ggccccacggcgcagcagcagggcgctatgggcctggggaaagacgtggggccccagtac
ggacccgcttcggctcacggctggggaggacagcaaaggaaccaccctcactctctgagc
ccgggtaacggaggacaaggcctcggcaggacgcaggtgtcctccatggacttcatggct
atgaagcgatcgcagctgtacggcatggccaacaatccttactccactccacagcagcca
gggggcggaccttacccccctagccagccgtacacgtcacctcctccgcaccgatatccg
atgggcatgcaggggaggggtcagatgatgggtggcatgcagtaccctcaacagcagcag
gtggcgccgtacggccagcaggtgatggcgggctacgggcagcagcagcagccagggcag
cagcagcagggaacccccccatacttcagcccccctcagcagacccctcctggcccaaac
caaagcccctacctgcagcctcgaccaccaccacaacaggaggcccagcaggagagctac
aacacccggggtcctgctccagggaattctgggaaggccaacaatgaggatggtgtctcc
caggaccgcccctccagtctgccggatctgtccggctcgattgatgacctccccacaggg
acggaggctggtctggtctcgaccgtcagcgccggtgggtcgtcctccagcagcagcagc
agtagccagggggagcagggaggcgccagtaaccagggacagtcccccttctccccgcac
gcctccccacatctccccagccagaggagcggcccctctccttcccctgttggctcgccg
gcgggctccactcagtcccagcactctcgctctggctctggacccatctctcctgccagc
ggaccctctgccaacaacgccgcaccaggttccaacgtggccctgcagagctctggaaac
ggaccagatggagcccacccaccaatcacccgctcacctatggctcaggagagaggattt
atgtccaacatgcagaggaaccaggccggctcccagtttgcttctcctcagtctggaccc
tctatgtccccgcacccttcacctgggggcccattgtatcctggaatggttccctactcc
cagagcggccccacaggccattacggacctcaaggatcacagtatggacatcaaggtaac
tacccccgtccctctaactacagcgggacggccagtgccagctacagcggccccggcccc
aacagcctgggtatgaatgctaccagccctatgcacggccagggtcccggccagcccata
cctgtgggacgtagccatggcccgagcaaccagaatagggtttatccgccaatggctccc
agctctcccagcatgcctcagccagctgggcctgggatgggtcctccgtctttgggtagc
tctaaccgcaaggttcaggatgcaggagccgctgtggtgctgggatctgccaactcaaca
cacaacaggcagggcagctatccaggccccggcatcagccaagcaagcactatggccacc
accgtcccctacagccagccagcaagcaacaacagctcagctatgggtaacgcacaaggt
ccagcctacatgccgccttcaggagccttggcgatgtcaggggacggaatgatgagcccg
gatgggaaacccaaagtggacgtgaaagatgacacaggccccgtcaacgagcctcccaaa
ccaaagctacaggacggctacagcaacaacaacagcagcagcagcagctcccagcagtgt
gtgtcccagccagcgacaccaggcggcgccttgcccgtgccctcccctctctcccccagc
ccggccagcttgtcctcctaccacggggacgacagcgacagcatcagcagcccaccatgg
ccactcaagaccccttctagccccaaagccaaccctaacgcctcctccctcagtggggag
cgaatcacgcgcctttttgagctgggtgtggagccagagaggcggggctgggtggaacga
tacctgaccttcatggaggagaggggcacggccgtctcccagctgcccactgtgggcaag
aagccactggacctgtggaagctctacttggctgtccgtgagataggaggcctcgccatg
gtaaacaagaacaagaagtggcgtgagctgtccaccacgctgaacgttggcacgtcgagc
agctccgccagcgccctcaagaagcagtacatccagtatctgttcgcctacgagtgtaag
atggagaggggagaggagccgccggcggacagcagcagcagcagcggcagcggcagcggc
agcggcagcggcagcagcagcatggctggaggggaaaacaggaagcaggtcaagatccag
ccaccgtcacctgcaaactcaggcggctccctccaaggcccacagacaccacagtcgtct
ggcagcagctccacagcagaggcagcaggggacctgaaaccccccacacctgcgaccacc
cctctggggcaggtcacaccgctgccccccaacaggagtagtgtgagcgtacaggacccc
ttctcggaggtgagcgacccggccttcgtaaagcgtgctgcctccctgcccccctcagct
ccctaccagcagggcctcagcatgcctgacatgatgatgaggatgcagtacgacaccaag
gacccctttgccgggatgaggaagatggctggagctgatccctacataccaggtcagatg
cctggtggtggtctgcaggacatgtatggccgacccccatcatctctgagcatgagccaa
agatcacagtatccgtacgggccaggctacgacaggagaccagaccatgtgatggggatg
gaggggagcatgggtcctcctgggagtcagaacaacctggggccgtccaacagcgagggc
agcatgtactctgccagcagatacccttcacagcagagacacgacggctacggtcagcag
tatcccagcatgccatatgggatgcatccatctgggatgtacccacaacagcagggctac
aaacggcccatggacggtatgtacggccccccacccaagagacatgagagcgacatgtat
gccatgcagtatggtaaccagcagccggacatgtacaaccactacagtggtggatactca
ggccctgaacacagaggcttacagggacagttcccctacccttacccccgcgaccgcata
ggcccctcaggacagagccagcacagtttgatgggcggggggcccactcctaaccacgct
gctgatgggcccaacatgtggccatccaggacagacctgggctatccctaccccaaccga
cagggtccgccatctcaaatgccaccgtacggctccattggtagagatgacatggacggg
cggcctgggcaggagcagtggcaccgtcagtctccctacttgtcttcagcaggtggcatg
ccgcccctgtcccgccagccatcgtcttattccaactccccatccatggccaaccacctg
cccagagcacccagcccaggggccttccagcgctccctggactctcggatgtcacccagc
aaaatgcagttcatgtcgcccatgaagatgcctaagcctgggatggccatgatgggctca
cagggcggtggatccatgggtcagtttcctcccaacctgaggagggacctcaactaccca
ccaggatcagtggaggcctccatgcccatcctcaagccccgtcgcaagctcacctccaag
gagactggtacgcctgaggcctggcgcgtcatgatgtctctgaagtctgggctgctggca
gagagcacatgggctctagacaccatcaacatcctgctgtatgacgacagcactgtggcc
tccttcatcctctctcagttgcctggattcctcgagctcatcgtggagcacttccgccgc
tgcctgatcgaaatctttgggatcctggaagagtttgaggtgggaaccgtagctcataaa
aactttttggatcctcctcctaaccagaaggaagaagaacccacccctgagcaggaaacg
gactctgctgttcagcctgagtcagagtcagccccggcagtggagacgcaggtggagcaa
acaggaggcgtcacagaggaagctccaaccgttgctgcagagccagagtctgctgtggtg
aacggtgaaaaggaggagtgtgaggcgagcagaaagaaggaggacaagaacaaggaagac
agagagaaagaggggaaggaaaaagaagagggtgaaaaaggagcagagagtaaaaaggag
tctacggagcagcctgtcactgagttacaacctaaacctcaacaagccagcaaatacgat
aagctccccatcaaggtcgtccacaaagaggacctgattgaagacatgacagagcgctta
ggttacatcactgagttcaccagtgggctgctccactggcaggccggtggtggcgactcc
accgcacacattcagacacactttgaaccccggattgctccacctgccagagcggatgag
aaaacaagaaaagaggacaagcaggaacaaaagatggaggacgggaagaaacaaccactg
aaacacatcaccgctaccattgatgatgttttgtgtgctcgtgttgacgccctctcttac
gcccaccctgcacgctccttgccatcctaccccttccgggtgcacccggacggggagcag
gaccacatcaccctgcttgaggatgagcctcgctgcctggacgaggctccgctctccaca
atatccgcctggcaggactcgctgtccaagcggtgcctctgcgtctccaacatcgtcagg
agcctgtccttcatccctggcaacgacttggacatgtcccgccaccctgcactggttctt
ctcctgggcaggctgctcctgctgcaacaccagcacccggagaggatgaggtcgccccct
agctaccagagagacgaacagcgcgagcaggggctgtcgagtagcaaagaagagtggtgg
tgggagtgtctgagtctgctcagggagaacgccctggtcacgctggccaacatctctgga
catctggacctctccacctactcagacaccatctgcctccccatcctggacggcctcctc
cactggatggtgtgcccctccgctgaagcccaggaccccttcccgtcagcagcgccccac
tccctgctcacccctcaaaggttggtgctggagtgcctctgcaagctgagtatccaggat
ggcaacgtcgacctcctgctagctacgccgcccttcagccgacaggagaaactgttcact
gtccttctccgttacgtgggacaaaggaaggcccaggtgtacagggaaatggcggtggcc
gtcctctcccacctggcacaaggagaccccacagcagcacgtgccatagccatgcagaag
ggcagtgtgggtaattttgttggtttcttggaggatggcgttagcatggcgcagtaccag
cagaaccctcacagcttactgcacatggggcatccccctttggacccgccgagcataaac
atgatgtgcagagcagccaaaggcctcttggccatggctaaagtggaggaaaacaaaacg
gagtttgcgctgtacgagagccgattattagacatctccatttcctctgtgctcagcgct
ggagtggtgaccattatttgccaagttctctttcacttggggaaattatga
DBGET
integrated database retrieval system
