Hippoglossus stenolepis (Pacific halibut): 118116613
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Entry
118116613 CDS
T08308
Symbol
dicer1
Name
(RefSeq) endoribonuclease Dicer isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
hsp03036
]
118116613 (dicer1)
Chromosome and associated proteins [BR:
hsp03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
118116613 (dicer1)
microRNA pathway
RISC loading complex
118116613 (dicer1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Dicer_platform
Dicer_dsRBD
Dicer_PBD
Ribonuclease_3
Ribonucleas_3_3
Dicer_dimer
PAZ
Helicase_C
DEAD
ResIII
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
118116613
NCBI-ProteinID:
XP_035024293
LinkDB
All DBs
Position
10:25965987..26055510
Genome browser
AA seq
1898 aa
AA seq
DB search
MAGLQLVTPATSPMGPFFGLPWQQEAIHDNIYTPRKYQVELLEAALEHNTIVCLNTGSGK
TFIAVLLTKELSHQIRGHYQRNAKRTVFLVNTALSVVQQAAAVRTHSDLQVGEYTDLEET
SAWTDQRWSQEIIENQVLVMTCHIFLHVLRNKILLLSKLNLVVFDDCHLAITDHPYCEIM
KLFEGCSCSPRILGLTASLLNGKCDPSELEQKIQNLETILKSNAETATDLVVLDRYSSQP
REVVLDCGPYLDKSGLSSHLLMELDEALHFLNDCNISVDREDRNPTLISKQILSDCRAVL
QVLGPWCADKAAGIMVRELQKYIKHEQEELNRKFLLFTDTILRKVHALCEEHFSPASLDL
KYVTPKVFRLLEILHEYKPFERQQFESVEWYNNRNQDNYVSWSDSEDDDEDEEVESKERP
ESNFPSPFTNILCGIIFVERRYTAVVLNRLIKEAGKQDPDLAYISSNFITGQSIGKNQPR
NKQMEVEFRKQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSK
GRARAPVSNYIMLADSERTKAFEEDLATYKAIEKILRNKCSKSVEVSDFEVEQVLDDDNT
LPPYVLRSEDGGPQVTINTAIGHINRYCARLPSDPFTHLAPKCKTLEMQDGCFQSTLYLP
INSPLRVPVKGPTMTCARLAEKAVALVCCEKLHKTGELDDHLMPVGKETVKYEEELDLHD
EEETSVPGRPGSTKRRQCYPKAIPVCLRDSYAVDIYYLYVIGMVLTTPLPDELNFRRRKL
YPPEDTTRCFGILTAKPIPRIPYFPVYTRSGEVTISIELQKSGFMLTSNQLNLITRLHQY
IFSHILRLEKPALEFKPTLADSAYCVLPLNVVGDSNTLDMDFKFMEDIEKSEARTGIPTT
QYTKQNPFTFKLEDYQDAVIIPRYRNFDQPHRFYVADVYTDLTPLSKFPSPEYETFAEYY
KTKYNLDLSNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWESLQNKQI
LVPELCAIHPIPASLWRKAVCLPSILYRLHCLLTAEELRAQTASEAGVGAQTLPPDFRYP
NLDFGWKRSIDSKTFISCPESCSEDSKGHCKHQQTITPDPSCLTQPDSYHSSLPEQGALA
APESEDTTCTHNLINGTAFVAHCDNSSHQDKHLLQHDNCQCSQPSFPGLPSPESKQTTTS
VPVQPSHSLKKSCPPQSSEGPGRISENTNKATSVCSRVTTASNTPTAPSPHLVSDSQHRV
QIGVSPKSLGPNPGLILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEG
RLSYMRSKKVSNCNLYRLGRKKGLPSRMVVSIFDPPVNWLPPGYVVNQDKCIIDKQDLGA
KEELLVNGQSGNDDDENDEEGEEVDEGGEVMLKDEPNEGNVEDDLEYYKEHIKFIDNMLL
GSGAFAKKISLSVLPPSPTVASASSPVMESPYEWKAPKKPLHTSSAHHPSEPAASGPLAE
EFDYSSWDAMCYLDPSKAGDEDDFVVGFWNPSEENCGVELGKQSISYDLHTEQCIADKSI
ADCVEALLGCYLTSCGERAAQMFLCSLGLKVLPLERGSLTGALGQSCQTTTIDLCYGWLK
IPPRCMLDHPDAEQTLNHLISGFENFERKINYTFQNKAYLLQAFTHASYHYNTITDCYQR
LEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAISP
ELFQVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDS
MMSLERVWQVYYPMMRPLIEKFSANVPRSPVRELLEMEPETAKFSPAERTYDGKVRVTVE
VVGKGKFKGVGRSYRIAKSAAARRALRSLKANQPQVNN
NT seq
5697 nt
NT seq
+upstream
nt +downstream
nt
atggcaggcttacagcttgtcacccctgctacttcacccatggggcctttctttggtctg
ccatggcagcaggaggctatccatgacaacatctatacacctaggaaatatcaggtagaa
cttcttgaagcagctcttgaacataatactattgtctgcttgaatactggctcagggaag
acctttattgcagtacttctaacaaaagagctctcccaccaaatccgtggacattatcaa
agaaatgccaagaggactgtttttctggtgaacacagctttgtctgtagttcagcaagca
gctgcagtcaggactcactctgaccttcaggtgggagagtacacagatttggaggaaacc
tcagcatggactgaccaacggtggagtcaagagataatcgagaatcaggtgctggtcatg
acttgccacatattcctgcatgttttgaggaataaaatcttactgttgtctaaactcaac
ttggtggtttttgatgattgtcacctggccattacagaccacccctactgtgagataatg
aagctgtttgaagggtgttcatgtagtcctcgtatcctgggtctcacagcttctcttctc
aatggaaaatgtgacccttcagaactggagcagaagatccagaatttggaaacaatcttg
aagagcaatgctgagactgccaccgaccttgttgtcctggacagatactcctctcagcca
agagaagtggtgctggactgcggcccctatttggacaagagtggtctttcctcccatttg
ctgatggaactggacgaagctctccacttcctgaacgattgcaacatatctgttgacagg
gaggatcgcaatcctacattaatttccaaacagatcctgagtgactgccgggctgtgctg
caggtgctggggccctggtgtgcagataaggcggcaggcattatggtgcgggagctccaa
aagtatatcaaacatgagcaggaagagctcaaccgtaagttcctgctcttcactgacacc
atcctgcgcaaagtgcatgccctctgcgaagagcacttctcccccgcttcactggacctc
aagtatgtcacccctaaggtcttccggctgcttgaaatcctgcacgaatacaagcccttt
gagaggcagcagtttgaaagcgtggagtggtacaacaatcggaaccaggacaactatgtg
tcctggagtgactcagaggatgacgatgaggatgaggaggtggagtccaaagagaggcct
gaatccaactttccctcacctttcaccaacattctgtgtgggatcatctttgtggagagg
cgttacacagctgttgttctcaaccgtcttatcaaagaggcggggaagcaggacccagac
ctggcttatatcagcagcaacttcataactggccaaagcattggcaaaaaccagccacgg
aacaaacagatggaggtggagtttaggaaacaagaggaggttctccgcaaattccgggct
catgaaaccaacctccttattgccaccagcattgtggaggaaggtgtggatattccaaag
tgtaacctggtagtgcgatttgacctgcccactgagtacaggtcctacgtccagtccaaa
ggcagagctcgggctcctgtctccaactatataatgctggctgacagtgagaggaccaaa
gctttcgaggaagatctcgctacatacaaggccatagagaagatcctgaggaacaagtgt
tctaagtcagtggaggtgagtgactttgaagtggagcaggttctggatgatgacaacacc
cttccaccttatgtgcttcgatctgaggatggaggtccccaggtcaccattaacacagcc
attgggcacattaacaggtattgtgctcggctacccagcgatccatttacccacttggca
cccaaatgtaaaactttggagatgcaggacggatgcttccagtccacactctacttaccc
atcaattcccctctgcgagtccctgttaagggtcctacaatgacctgtgccagattagca
gagaaagctgttgcactagtatgctgtgagaaactccacaaaacgggtgagttggatgat
cacctgatgcccgtggggaaggagactgtcaagtatgaggaggagctggaccttcatgat
gaggaggagaccagtgtcccaggccgacctggttctaccaaaaggaggcagtgctaccct
aaagctataccagtgtgtctgagggacagttatgctgtagacatatactatctatatgtg
attgggatggtccttaccacccctctcccagatgaactcaacttccgcagaaggaagctc
tacccaccagaggacaccaccaggtgctttggcatccttactgccaaacccatacctcga
atcccttatttcccagtgtacactcgctcgggtgaagtgaccatctccattgagctgcag
aagtctggcttcatgctcacatccaaccagctcaacctcatcacccgcctgcaccagtac
atcttttcccacatactccgcctggagaaacctgcactggagttcaagcccacgctagca
gactctgcttactgcgttctacctctgaatgttgttggggactccaacacacttgatatg
gattttaagttcatggaggacattgagaagtctgaggcccgcactggcattcctaccact
cagtacaccaaacagaaccccttcaccttcaagttggaggactaccaggatgctgtcatc
attccaaggtatcgtaactttgaccagcctcatcgcttctatgtcgccgatgtgtacaca
gacctgacgccgcttagcaagtttccttcacccgaatacgagacgtttgctgagtactac
aaaaccaagtacaacctggatctgtccaacctaaatcagcctctcctggatgttgatcat
acctcctccagactaaacctgttgacccctcggcacctcaaccagaagggaaaagccctg
ccactcagcagtgcagagaagaggaaggccaagtgggagagcctgcagaacaaacagatc
ctggttccagagctgtgtgccatccaccctatccctgcctccctgtggaggaaagcagtg
tgtctgccgagcattctctaccgcctccactgcctcctgactgctgaggagctcagagcc
cagacagccagtgaagctggagtgggagcccagaccctcccacctgacttcaggtatcca
aacctggactttggctggaagagatccatagacagcaaaacatttatctcctgtcctgag
tcctgcagtgaggatagcaagggtcactgtaagcaccaacagacaataacccctgacccc
agttgcctaacacaacccgatagttaccactcttctctgcctgagcagggggcccttgca
gcccctgagtctgaagacaccacctgtacccacaacctaattaatggcactgcctttgtc
gcacactgtgacaacagcagtcaccaagacaagcaccttctccaacatgacaactgccaa
tgctcccagcccagctttcctgggctgccgagccctgaatcgaaacaaaccactacctca
gttcctgtgcagccctcacacagcttgaagaagtcctgtcctccccagtctagtgaagga
cctgggaggatttctgaaaacacaaataaagctacctcagtctgcagccgagtaaccacg
gcttccaacactcccacagcaccttctcctcaccttgtgtctgactcccagcacagagtc
cagataggcgtctcccccaaaagtctggggcccaaccccggcctcatcctgcaggccttg
accctgtcaaacgcaagtgatggcttcaacctggagcggttagagatgctgggtgactcc
ttccttaagcatgccattaccacatacctgttctgtacctatcctgatgctcacgaggga
cgactcagttacatgcgcagcaagaaggtgagcaactgtaacctgtatcgtctggggagg
aagaaggggctcccaagcaggatggtggtgtccatctttgacccccctgtgaattggctc
cctcctggctacgtggtcaaccaagacaaatgcatcattgacaaacaggatttaggggcc
aaagaagagcttctggtcaatgggcaatctgggaacgacgatgatgagaatgatgaggag
ggtgaagaagtggatgaaggcggtgaggtaatgctgaaggatgaaccaaatgagggcaac
gtggaagatgatctggagtactacaaggaacacattaaattcattgataacatgttgctg
ggatctggtgcatttgcaaagaagatctctttgagtgttctccctccatctcccaccgtg
gcctcggcttcctcacccgtaatggagtctccatatgaatggaaggcccccaagaagccc
ctccatacctcctcagcccaccacccctctgagccggcagccagcgggcccttagccgaa
gagtttgactacagttcgtgggatgccatgtgctacctggaccccagcaaggccggagac
gaggatgactttgtggtgggtttttggaatccatcggaggagaactgtggagttgagctt
ggcaagcagtcaatctcctacgatctgcacacagagcagtgtattgcagacaagagcatt
gctgactgtgtggaggctttgcttggctgctacctaaccagctgtggagaaagagctgcc
cagatgttcctctgctcattgggcctcaaggtgttaccgttggagagagggagcctaaca
ggagctctggggcaaagctgtcagacaacaactattgacctgtgttatggctggttaaag
atcccaccccgctgcatgctggaccatccagatgcagagcaaactctaaaccacctcatt
tccggctttgaaaactttgaaagaaagatcaactacacctttcagaataaggcttacctc
ctgcaagcctttacccatgcatcttaccattacaacaccattacagattgttaccagcgg
cttgagttccttggtgatgcaattttagactacctcataacaaagcacctttatgaagac
ccacggcagcattcacctggtgtgctgacggacttgcgctcagcactcgttaacaacacc
atctttgcctctctggctgtcaagtacgactaccacaagtacttcaaggccatctcacct
gagcttttccaggtcattgacgactttgtgcagtttcagttggagaagaatgagatgcaa
ggcatggattctgagctgcgacgctctgaggaagacgaggagaaggaggaggacattgag
gttcctaaggccatgggggatatctttgagtcgttagccggagcaatttacatggatagc
atgatgtcattggagagggtttggcaagtgtattatcccatgatgaggccacttatagag
aaattctctgccaatgtgccacgctctcctgtgagggagcttctggagatggaaccagaa
actgccaagttcagccctgcagagagaacgtatgatggaaaggtgcgggtgacggtggag
gtagttggcaagggcaagtttaaaggagttggccgcagttaccggatcgccaagtcagca
gcggcaagacgagctctgcgtagcctcaaagccaatcaacctcaggtcaataactga
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