Hippoglossus stenolepis (Pacific halibut): 118116930
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Entry
118116930 CDS
T08308
Symbol
tmc5
Name
(RefSeq) transmembrane channel-like protein 5
KO
K21988
transmembrane channel-like protein
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
02000 Transporters [BR:
hsp02000
]
118116930 (tmc5)
03037 Cilium and associated proteins [BR:
hsp03037
]
118116930 (tmc5)
Transporters [BR:
hsp02000
]
Other transporters
Pores ion channels [TC:
1
]
118116930 (tmc5)
Cilium and associated proteins [BR:
hsp03037
]
Other cilia and associated proteins
Stereociliary proteins
118116930 (tmc5)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TMC
YebO
TMEM208_SND2
Motif
Other DBs
NCBI-GeneID:
118116930
NCBI-ProteinID:
XP_047194197
LinkDB
All DBs
Position
2:8070380..8079647
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AA seq
965 aa
AA seq
DB search
MTSYSNGGFFNAAYHDSETLEVDRRYSNKSRHTNPYPRDDPAWQGDRAETHDGYMSHMTG
GNEASARVPWRGWQGESWRGIESIPMGLISARPGGPSQHHDLNHSTFQVNPDSQYDRAPS
VRLPSSMSGNMTLRWRGITERRMSMFPGIDPTHVAFTEDAIRNEMENEEQNLVKDLVAMS
TRDRIRAIQDLPMSFEEKKHIRSQVMAFKSSKQSRQFTCFADCSESVSLFFRRCGYSIRS
ARQTLELWQGIMKEIGGKFGTSVLSYFVFLKWLLMFNIFSFLVNFGFITIPLLVYDPLPN
IPPNVSFRGLEILTGAGYFTNTVMYYGGYSNETLVGLVDYNMQLAYFFTITVYMVLCGIA
LIFSMASSFRTNYVLASPASSGAWQLLCSWDFSVTNERAVKQRKNNLCVQLKESLSEKAQ
RELLTLSEKLKHLGVYLGSWLLSTGLAVGCGASIYYLCQYEQQRATDAASWSLLQEAETL
LVPFVVSLMNMVVPLFYSLFYKFEHYSSQRRQIYALVVRNVLLRMSILGVLCYYWMNVVA
TNFSCWESMVGQALYRLVIFDFFFLMLGSFFGEFLSNVIGTTLLPRLGVPEFDIARNVLE
LIYAQTLAWVGIYFSPLLPAIQIVKLFILFYLKKVSLTQNCQPPRRTGRAAQMQTTFIAL
LFFPFFVGALSMVAYTAWSLTPSEQCGPFRGLNNTFSVVGVWIDDLEEIPGSHWVVWIYQ
NVIRSEIFYFLITLIILVIIYMFWQVSQGRKELIGLLRQQIVNEGKDKSFLLDKLQNLQK
SQPTKKPKQKNQKKPKRRSDVHSSGGQSSSNAMFQAFLARQHFEEEEERRSDGGVPVPSD
MSTSSALMQAMLARQRADNLVDDVYQMSDKHLPSSGALTQAMQARQRAEARQRAEEDRID
DTGDPTSSVSNVMMQVMQARQRAEEENRSQWLPAQPQNPAPPGSSALIQAMLARQQAGNE
FDDGY
NT seq
2898 nt
NT seq
+upstream
nt +downstream
nt
atgacaagttacagcaacggtggatttttcaacgctgcttatcatgacagcgagacgctg
gaagttgatagaaggtattcaaacaaatcccgccatactaacccctatcctagggatgac
ccggcctggcagggtgacagggcagagacacatgacggctacatgagtcacatgacgggc
ggtaatgaggcttcagccagagtgccctggaggggctggcagggggagagctggaggggg
atagagagcatccccatgggcctcatttcagcgcgccctgggggcccttcacagcatcat
gacctcaaccacagcacatttcaggtcaaccctgactctcagtatgatcgcgcgccatca
gttcgacttccttcttcaatgtcaggcaacatgacactgagatggaggggaatcacagag
cggaggatgagcatgtttcccggcattgatcctacccatgtagcgttcacagaggacgcc
atcaggaacgagatggagaatgaggaacagaacctggtcaaggaccttgttgcaatgtca
acacgagaccgaatccgagctatccaggatcttccaatgagctttgaggaaaagaaacat
atcaggagccaagtaatggcgttcaagtcctccaagcaatctcgccagttcacatgtttt
gcagattgctctgagagtgtgtcactgtttttccgcaggtgtggctacagtatacggtca
gccaggcagaccctggagctgtggcaaggcatcatgaaagagattggtggcaagtttggc
accagtgtcctctcctatttcgtgttcctcaagtggctgctcatgttcaacatcttctcc
ttcctggtcaactttggcttcatcaccatcccgctgcttgtttacgaccccttacccaac
atacctccaaacgtgagcttcagaggactggagatactgactggagctggttacttcacc
aatactgtcatgtactacggtggctacagcaatgaaacacttgtgggtctggtggactac
aacatgcagctggcctatttcttcaccattacggtctacatggtgctgtgtggtattgca
cttattttcagcatggcaagctcctttaggacaaactatgtactagcatcaccagcttca
agtggcgcatggcagcttctgtgcagctgggattttagtgtaaccaatgagagagcagtg
aaacagcgcaagaacaacctctgtgtccaactcaaggagtctttgtcggagaaggcccag
agggagctgctaaccctctctgaaaaactgaagcacttgggggtttatcttggttcctgg
ctcctctccactggcttagctgttggctgcggagccagcatttactacctctgccaatat
gaacagcagcgagcaactgatgctgccagctggtctctgctgcaggaggcagagactctc
ctggttccctttgtggtgtctctgatgaatatggtcgtcccgctcttctactcactcttc
tacaagtttgagcactactccagccagcggagacagatctacgctctggtggtcagaaat
gtcctactcaggatgtccattctgggtgtcttgtgttattactggatgaacgtggtggct
acgaatttttcgtgttgggagtccatggtaggacaggctttgtaccgtctggtcattttt
gacttcttcttcctgatgttgggatctttctttggagagtttctcagcaacgtaattggg
accacattactaccacgtctgggggtccccgagttcgacatagccagaaatgtccttgaa
ctcatatatgcacagacacttgcctgggttgggatctacttctctcctctgctgcctgcc
atccagattgtcaagttgttcattttgttttacctgaagaaggtcagcctgacccagaac
tgccagcctccaaggcgaacaggcagggcagctcagatgcaaacaaccttcatcgccctc
ctcttcttccctttcttcgtgggagccttgtccatggttgcatacactgcctggagtctg
actccctcggagcagtgtggtccttttcggggactcaacaacaccttcagcgtggttggc
gtctggatagatgatctggaggaaatccctggttctcactgggtggtctggatctaccaa
aatgtcatcaggagtgagatcttctattttcttatcacactcatcatcctggtcatcata
tacatgttctggcaagtcagtcagggccgcaaggagttgattggtctactgagacagcag
attgttaatgagggaaaagacaagtcgttcttgttagacaagctccagaacctccagaaa
tctcagcctactaaaaaacctaaacagaagaatcaaaaaaagcccaaacgacgttcagat
gtccactcctcaggcggtcagtccagctcgaatgccatgtttcaggctttccttgctcgc
cagcatttcgaagaggaagaagaaagacgcagcgatggtggagtgccggttccctccgac
atgtccacctccagtgccctgatgcaggccatgttggcccggcagagagctgacaacctg
gttgacgatgtgtaccagatgtctgataaacacctgccatcctccggtgccctcacacag
gccatgcaggccaggcagagggcagaggccagacaaagagcagaggaggacaggatagat
gacacgggggacccaacatcttctgtgtcaaatgttatgatgcaagtcatgcaagccagg
cagagagctgaggaagagaacaggagccaatggctccctgctcagccacaaaacccagcc
cccccaggctccagtgctctcattcaggccatgttggcccggcagcaggccgggaacgaa
tttgatgacggttactga
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