Hippoglossus stenolepis (Pacific halibut): 118117332
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Entry
118117332 CDS
T08308
Symbol
acin1a
Name
(RefSeq) apoptotic chromatin condensation inducer in the nucleus
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03013
Nucleocytoplasmic transport
hsp03015
mRNA surveillance pathway
hsp03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
118117332 (acin1a)
09122 Translation
03013 Nucleocytoplasmic transport
118117332 (acin1a)
03015 mRNA surveillance pathway
118117332 (acin1a)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsp03019
]
118117332 (acin1a)
03041 Spliceosome [BR:
hsp03041
]
118117332 (acin1a)
Messenger RNA biogenesis [BR:
hsp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
118117332 (acin1a)
Spliceosome [BR:
hsp03041
]
Complex C
Other components
EJC/TREX
118117332 (acin1a)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
118117332
NCBI-ProteinID:
XP_035025377
LinkDB
All DBs
Position
11:6342647..6359710
Genome browser
AA seq
1744 aa
AA seq
DB search
MADLEDVTLDGRPLQSLRVADLKAALEERGLSKSGQKNALIKRLKGALMLENLQRTSTAH
IGLQPNSQIGEEMSQNSFIKQYLAKQQELLRQRLEREAREAYETNDQEDHAEVNNSTSCP
PQAQDVTPALPEQHKPPGPSGGEGFFSEGNDEEGDRNNEADMSSPPASGSVAMRVPGGEH
RPERGFASSEVAADSDDDDSEEAEEDGDDDDWDSGARRRNLREPARVPSSRERSGASCQP
QQQHIPSLLSPQLRQPTPPPSPPPELSFPLPDTPKQSPPSPDVAPPRHSPSTSSSGSSSS
GSRSSSPEPQRSGHTERKPGPLTLLARKMESEGAFSGAGWHGGDGEGDRHDSSSPSATLF
PSRGPPEGLVSAITHTANTAGHMPFPMIPGTNQGVTGAHSAHIQVPVSVLKATATEERDR
QRDLEIEREELERQRKLEQEKAMELERERALALEREEKQRALERERIERQQALEREEREK
ALQRERALALERERKERELVLERERQERELALERDRQERELALAKEREEREQALARERKE
RELVLERERRERELLALAKEMEEREQALARERALERQKELERQRALEQERLQREREDREK
REREEMQRAMELERAKTLERERQERDRAIEQERLERERALEAERRQRIEREKALEQEKLE
RFEREKALEHERLERERALEQERIEKEKALERERIEKEKALERERIEREKTLERERIERE
KALELERIEREKAIQQERLERERALEQERSELERKEKERIERERVGREKALEREREEKER
AERKAALEKERMEKERAEKERKERLEREKLEQERALEKERKERALKEERERALERQRKEK
EEQEKEQARMAEKERESHLPPSKRGRDIGLTPLPTPPSLSTGPARKLSTEAGAQEDVHAQ
IPRSESQAAESSAPMSPTPLSQQSSFKKFRFLRDSPIQPQPSSTSMVIKRPRTFSDTPQP
QASPVLSPSSVTEQQQQGGHRPSAEQEDRKMQTKPEVVAGPPGPTKNEAAKPVPDDREQA
DSVKAEHAAKDSTQKSKVDESKSPSSPLAQREGRDAKKQEKQTRRRSTSNDSSSSESGSE
SSSSRSSRSSASSQEETSSSRNRREVKPVRDSSPQHRMTVEILAEGSKEIPKATPLKRAI
SGDMSNTTADGDSHIKKPFIEAAPGEETQRKRTDSEREEEKDKQRQVKETGMAESEKLPE
NSEETPKAFSARKISLSSNKLSPGPGSVEGEQESGAAAGRKRRWGSSTAVTAKKPSISIT
TDSLKSLIPDIRPCLGQEAIVDLHPEEAVLSGVEDEERERSDQDLQIRRTVTQVVHLESK
ENGQKEVKRSRHEELEEEDLQGEKDRTMTLEEKMDTSFPGAVETQSPSHTGHDVEINTVT
PSDTLIRRSISQQKTGVSITIDDPVRTSQQPSPPRGKVSNIVHVCNLVRPFTLGQLKELL
SRTGTLVEDSFWIDKIKSHCYVTYSCSEEAVATREALHGVKWPQSNPKVLSVDFCQQDEL
DFHKGLVTADRTGAEEQGPGTGRGRTSGLPSLLPERDQWAEREREMERRERAKAEREWDR
DKVKEFGKPGSEKEGGPRRSRSRERKRKERGKSKEKKTEKKEKAAEDPPAKLLDDLFRKT
KAAPCIYWLPLTDEQFIQRETARADRAKEREKRRKEQEEEEEKKREEERKERMKAGGGTT
GDRSEGEKDKDRERDRERGRDRDRERERENDKRRDGYRRQGGSGAGGGGSRRSRSRSDPR
ERRR
NT seq
5235 nt
NT seq
+upstream
nt +downstream
nt
atggcggacctcgaagacgttacgctggacgggagaccgctccagtccctccgagtggcg
gatctgaaggcggctctggaggagagggggctctcaaaaagcggccagaagaatgctctg
atcaagagactcaagggggctcttatgttggagaatcttcagaggacctccactgctcac
attggcctgcagccaaactctcagattggtgaggaaatgagccagaacagctttatcaag
cagtatctggctaaacaacaggagctcctgcggcagcgtctggagagggaggcccgcgag
gcatatgaaacaaatgatcaagaggaccatgcagaagttaacaatagtacctcatgtcct
cctcaagcccaggatgtcacaccagcattgcctgagcagcacaagccaccgggcccctct
ggtggagagggattttttagtgaagggaatgatgaagagggtgatagaaacaacgaggcc
gacatgtccagtcctcctgcgtctggctctgtggccatgcgtgttcctggtggtgaacac
cggccagagaggggttttgcctccagtgaagtcgcagctgacagcgatgatgacgatagc
gaggaagcagaggaggatggtgacgatgatgattgggacagcggtgctcgtaggagaaat
ctcagagagccagccagagtgccctcaagcagagagaggtctggagcatcctgtcaaccc
cagcagcaacacatcccttcccttttgtctccacagctccgccaaccaacacctccaccc
tccccgcctccagagttatcattccccttgcctgacacccctaaacagagcccccctagt
ccagatgtagctccccctagacactcacccagtacctccagctctggctcctctagcagt
ggcagccgcagcagcagcccagagccacagaggagtgggcatactgagcgaaagcccggc
ccactgaccctcctggctcgtaaaatggagtcagaaggtgcgttctcaggagcaggttgg
cacggcggtgatggggaaggcgataggcatgatagcagttctccttcagccacattgttt
cctagcagagggcctccagagggtctggtatctgccatcactcacacagccaacactgca
ggccatatgccatttcccatgattccaggcaccaaccaaggtgtcacaggggcacattca
gcccatattcaagtacctgtgagtgtacttaaagccactgcaacagaagagagggacaga
cagagggacttggagatagaaagagaagagcttgagaggcagagaaaacttgagcaagag
aaagcaatggagttagagcgggaaagagctcttgcactagagcgtgaggaaaagcagaga
gctttggagagagagagaattgagcgacagcaggccttagaaagagaggaacgagaaaaa
gccttacagagggagagagcgcttgctcttgagcgagagagaaaggagagggaacttgtc
cttgagcgagagagacaggagagggaacttgctctcgagcgagatagacaggagagggaa
ctagctttggctaaagagagggaggaacgagagcaagccttagcacgagaaagaaaggag
agggaacttgtccttgagcgagagaggcgagagagggaactactagctttggctaaagag
atggaggagcgagagcaagccttagcacgggagagggccctggagcgacagaaggagctt
gaaagacagagggctctggagcaagagcgtttacagagagaaagagaggatagggaaaag
agagagagggaagaaatgcagagggctatggagctagaaagagctaagactttggagagg
gaaaggcaggagagagacagggcaattgagcaggagaggttggagagggaaagagctttg
gaggctgagagacggcagagaattgaaagagagaaggctttggagcaggaaaagttggaa
aggttcgagagggagaaagccttagagcatgagagactagaaagggagagagccctggag
caagagaggatagaaaaagagaaagctttagaacgggagagaattgagaaagagaaggcc
ttagagcgagagagaattgaaagagagaaaaccttagagagggagagaattgagagagag
aaagccttggagttagagagaatagaaagagaaaaggctatacagcaagaaaggttggag
agggagagagccctagagcaagagagatccgagcttgagaggaaggaaaaagagagaatt
gaacgagagagggtagggagagaaaaggccttggaacgagaaagggaggaaaaagagaga
gcagagaggaaggcagctctggagaaggagaggatggagaaggaaagagctgaaaaggag
aggaaagaaaggctagagagggagaaactggaacaggagcgagccttagagaaggagagg
aaagagagagccctaaaggaagagagggaaagggctctcgaacgccaacgaaaagaaaaa
gaggaacaggagaaagagcaagctaggatggctgaaaaggagagagagagtcacctccct
ccatccaaacgtggccgtgacattggtctcacccccctgcccactcctccctccctctcc
acaggaccagctagaaaattatcgactgaggcaggagcacaggaagatgtccatgctcaa
ataccacggagtgaaagccaggcagcagagtccagtgcacccatgtcaccaacacctctg
tcacaacagtcttcatttaagaagttccggttcttaagggactctccaattcagccacag
ccttcctccacttccatggttatcaagcggccccggaccttctctgacaccccccagccc
caggcctcacctgtcctctccccctccagtgttacggaacaacaacagcagggaggacac
aggccctctgctgaacaagaagatcgaaagatgcagacaaaaccagaggttgtcgctggg
ccaccaggacccacaaaaaacgaggctgcaaaacccgtaccagatgacagagaacaggca
gattcagtgaaggctgaacatgctgccaaggattccacccaaaaatctaaagtggatgaa
agcaagagtccttcaagcccactagcccagcgggagggtagggatgctaagaagcaagag
aaacaaacaagacgaagatcaacgtctaacgattcctcttcctcagagtcgggctctgag
tcctcatcatctcggtcttctagatcgtctgcatcttctcaagaggaaacttcctcctcc
agaaatagaagggaggtgaaacctgtaagagactcctcaccacagcacaggatgactgtg
gagattcttgctgagggttctaaagaaatccccaaagccactcctctcaaaagagcgata
tctggagacatgagtaacacaactgctgatggagacagtcacatcaagaaacctttcatt
gaagctgcacctggagaggagacacaaagaaaaagaacagacagtgaaagagaagaggaa
aaggacaaacaaaggcaggtgaaggagactggcatggcagagtcagagaagcttccagag
aacagcgaggagacaccaaaggccttctcagctcgtaagatctctcttagcagcaacaaa
ttgtcgccaggccctggcagtgtggagggtgagcaagagtctggggctgcggccggtcgc
aagaggcggtggggttccagcacagctgtcactgccaagaagccttccatcagcatcacc
acagactcactgaagtctctgatcccagacatccgaccatgtcttggtcaagaagcaata
gtggatctgcacccagaggaagctgtcctctctggggttgaggatgaagagagggaacgc
tctgaccaggaccttcaaatccgtcgcactgtcacacaggtggtgcacttggagagcaag
gagaatggacagaaagaggtgaagaggagcagacatgaggagctggaggaggaagatcta
cagggagagaaagacagaacaatgacgcttgaagagaagatggacacctcatttcctgga
gcagtggaaacccaatcaccatcacatacaggccatgatgtagaaatcaacactgtgacc
cccagcgacaccctcattcgtcgctccatcagccagcagaaaacgggtgtctccatcaca
attgatgacccggtccgcacgtcccagcagccttcaccgcctcgtggcaaagtctccaac
atagttcacgtctgcaacctggtgcggccattcactttggggcaactgaaggagttgctc
agccgaacaggcaccctggtggaggacagcttctggattgataaaatcaagtctcactgc
tatgtcacttactcgtgctcagaggaggctgttgccacacgggaagctcttcatggagtg
aaatggcctcagagcaacccaaaagtccttagtgtggacttctgccagcaagatgagctg
gacttccacaaaggcctggtgacagccgacagaactggagctgaggaacaggggcctggc
actggtcgtggtcgaacatcaggcctgccctctctcctccctgagcgagaccagtgggct
gagcgtgagcgtgaaatggagcgccgggagagggccaaagcagagcgggagtgggatcgt
gacaaggtcaaagagttcggcaaacccgggtcagagaaggagggaggtcctagaaggtcg
cgctcccgagaacgaaaacgtaaagagagaggaaagagcaaagagaaaaagactgaaaag
aaggagaaagcagctgaggatcctccagcaaagctgcttgatgacctgttccgaaaaact
aaagcagctccttgcatatactggcttccacttaccgatgaacagtttatccagcgagaa
actgccagagcagaccgggcgaaggagcgagagaaacggaggaaggagcaagaggaggag
gaggagaaaaaaagggaagaagagcgcaaagagaggatgaaagctggaggtggaacaaca
ggagaccggagtgagggtgagaaggacaaggacagagaaagagacagagaacgaggtaga
gacagagacagggagagggagagggaaaatgataaacgcagggatggctacagaaggcag
gggggcagcggggcaggtggcggcggcagccgacgctcacgcagccgcagcgacccgcga
gaaaggcggcgctaa
DBGET
integrated database retrieval system
