Hippoglossus stenolepis (Pacific halibut): 118117445
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Entry
118117445 CDS
T08308
Symbol
smg7
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG7 isoform X1
KO
K14409
protein SMG7
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
118117445 (smg7)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsp03019
]
118117445 (smg7)
Messenger RNA biogenesis [BR:
hsp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
118117445 (smg7)
mRNA cycle factors
Common to processing body (P body) and stress granule
118117445 (smg7)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
TPR_2
zf-AD
Motif
Other DBs
NCBI-GeneID:
118117445
NCBI-ProteinID:
XP_035025547
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All DBs
Position
11:complement(24846358..24862259)
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AA seq
1187 aa
AA seq
DB search
MTLCAQYLRQAEALKADMTDSKLGAAEVWTSRQALQDLYQKMLVTDLEYALDKKVEQDLW
NHAFKNQITTLQSQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRV
KSSQLGIISNKQSNTSGIVSPQPSSCSYICQHCLVHLGDIARYRNQTSQAESYYRHAAQL
VPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALESREEGK
TKWSVSDFIKAFIKFHGHVYLSKSLDKVDALREKLEEQFQRLILQKAFSSQQLVHITVIN
LFELHHLRDLTCDGSEPAYSSEQQISWFQLLGLFMSFLGVMCSRVLLNKTRGEDIMGECP
LPAIKVSLDWLKLKPSVFHEAAVDQRQHVWPWLVSILNSFQPQEYDVSCSSVTPLPEEFE
LQGFLALRPALRSLDFTKGHQGILVDRDGPPVHTRHQRLISLGKWVADNQPGLIQCRVSE
DGLLLFITDIPEQAIEEPQEREAPVLQESSNGEQMPNDGGNSGLKSVLSAGKTQSSWPDS
SDRPVVTFKENIKPREQSREMMRNPHQKDGGKERRDFGKGNGAAGKGELKRDGKRKSELK
KTGHEKTTEAVKQVKAQTELRKTPVSEVKKTPVTQTQTTCSSQFIPIHHPGAFPPLPSRP
GFPPSAYVIPPPVAFPGLQVNPGFTFSTGVSVPGPFLQPAAHTQAGTQVQAGKQSHIPYS
QQRPSGPGPGQGPGSMNQSPSQGQQPLSQPPSQQALQQSVQLQVQTMSQQQQSPTRPVQQ
VGIGKSPPHLPGLQQYMQVQDQPAQIWNQAQAALQKMNPMQMSMKQQPSQTFFMASPDPL
KLYEHQLQPQLSNMDKKIKFPDAKMQDFYWEPSYRMGDGLAVMADRMKRPPPGGICSEQD
GSTGPRGPPFEDKSSPLLPPDLLKSLADFEEEEELVFSKPPDFFQALAAPLSSAPGPNMF
LSNQTRMESGPEVISQSSSLLPISGFPMQEYNQNSIFSQAYGKTLPPSSKPDAPMMHQEP
SLYSLFEGTPWSPSLPASSDHSTPASQSPHSSNPSSLPSSPPTHNHGAMPFSNFGPIGTP
DSRDRRVVDRWKADKTGAVSGFGLDYLPAAASSAASDTSWHQSGPTGSSWTNQESPMEES
SSTVLLDSLKSIWSSSMMQPGPSALEQLLLQQKQKQQRGHGAMNPPH
NT seq
3564 nt
NT seq
+upstream
nt +downstream
nt
atgaccctctgtgcccagtacctgagacaggctgaggccctgaaggctgacatgacagat
tctaagctgggggcggcagaggtgtggacgtctcggcaggccctgcaggacctgtaccag
aagatgctggtgactgacctggagtacgctctggacaagaaggtggagcaagacctgtgg
aatcatgcgtttaagaaccagatcaccaccctgcagagccaggccaagaaccgagccaac
cccaaccgcagtgaggtccaggccaacctgtcgctgtttctggaggcagcaagtggcttc
tacacacagttactgcaggagctgtgcactgtctttaacgtggacctgccgtgtcgcgtc
aaatcgtctcagctcggcatcatcagcaataaacagagcaacaccagcggcatcgtcagc
ccccagcccagctcctgctcctacatctgccagcactgcctcgtccacctcggagacatc
gcccgttaccgtaaccagaccagccaggcggagtcatactaccgacacgcagctcagctg
gttccatcaaacggtcagccctacaaccagctggccatcctggcctcttctaaaggagac
cacctcaccaccatcttctactactgccgcagtatcgcagtcaagttccccttcccagca
gcctccaccaacctgcagaaggccctgtccaaggccctggagagtcgtgaagaggggaaa
accaagtggagtgtgtcagatttcatcaaggccttcatcaagtttcacggtcatgtctac
ctgagtaagagtctggacaaagtggacgctctgagggagaaactggaggagcagtttcag
aggctgatcctgcagaaagccttcagttctcagcagctggtccacatcacagtcatcaac
ctgtttgagctccaccacctcagagacctgacgtgtgacggcagcgagccggcctacagc
agcgagcagcagatcagctggttccagctgctcggactcttcatgtccttcctgggcgtc
atgtgcagccgtgttctgctcaacaagaccaggggggaggacatcatgggggagtgtcct
ctgccggccatcaaagtttccctggactggcttaaactgaaacccagcgtcttccacgag
gccgcagtcgaccagaggcagcatgtttggccctggctcgtctccatcctcaacagtttc
cagccccaagagtacgacgtgtcctgttcctcagtcactcccctgccagaggagtttgag
ctgcagggtttcttggctctccggccggctctgaggtctctggacttcaccaaaggtcat
cagggaatcctggtggacagagacggcccgccggtccacactcgacaccagagactcatc
agtctgggtaaatgggtggcagacaaccagccagggctgattcagtgcagagtgagtgag
gacggtctcctcctgttcatcactgacattccagagcaggccatcgaggagccgcaagag
agggaggcaccggtgctgcaggagtcgtcaaacggcgaacagatgcctaacgacggcgga
aactccggcctgaagtcggtgctgtcggcggggaagacgcagagctcgtggcctgacagt
agtgacagacccgtcgtcaccttcaaggagaacatcaaaccccgagagcagagccgcgaa
atgatgcggaaccctcatcagaaggacggcggcaaagagcgcagagacttcggtaaaggc
aacggggctgctgggaaaggagagctaaagagggacgggaagaggaagagcgagctgaag
aaaaccggccacgagaaaacgactgaggccgtaaaacaggtgaaggctcagacggagctg
aggaagactccggtgtccgaggtgaagaagactcctgtcactcaaactcaaaccacctgc
tcctcccagttcatccccatccatcatcctggagccttcccccccctgcccagcagaccc
ggtttcccgccctcagcctacgtgatccctcctccggtggcgttcccagggctccaggtg
aatccgggcttcaccttctccaccggcgtgtccgtccccggaccgttcctccagccagct
gcccacactcaggctggcacacaggttcaggccggaaagcagtcccacattccctacagt
cagcagaggccctccggtccagggccgggtcagggccctgggtccatgaaccagagcccc
tcccagggtcagcagcccctgtcccagccgccctcccagcaggctttgcagcagtctgtc
cagctgcaggtgcagacgatgagccagcagcagcagtctcccaccagaccggtccagcag
gtcgggatcgggaagagtccgcctcacctcccaggactgcaacagtacatgcaggtccag
gaccagccggctcagatatggaaccaggcacaggcggcactgcagaagatgaatcccatg
cagatgtccatgaagcagcagccgtcacagacgttcttcatggcgtctccggatcctctc
aaactgtacgagcaccagctgcagccacagctgtccaacatggacaagaagatcaagttc
cccgacgccaagatgcaggacttctactgggagccatcctacaggatgggggacggcctt
gccgtgatggcagacaggatgaagaggcccccaccgggtggtatctgctcagagcaggac
ggctccaccgggccccgggggcccccctttgaggacaagagctcgcctctcctgcctcct
gacctgttaaaatctctagcagattttgaggaggaggaggagctcgtcttttctaagcct
cctgatttcttccaggccttggctgctcctcttagttctgctcctggaccaaacatgttt
ctgtccaaccagaccaggatggagagcggccccgaggtcatcagccaatcgtcttctctt
ctgcccatctctggtttccccatgcaggagtacaaccagaacagcatcttcagtcaggcg
tacggcaagacgctgccgcccagctccaagcccgacgctcccatgatgcaccaggagccg
tccctctactccctgtttgaagggactccgtggtccccctccctccctgccagctcagac
cactccaccccggccagccaatcccctcactcctccaaccccagcagcctgccgtcctcc
cccccaacacacaaccacggagctatgcccttctctaacttcgggcccatcggcactccg
gacagccgcgaccgccgggtagtggaccgctggaaggccgacaagaccggagccgtcagc
ggcttcggtctggactacctgccggctgctgcgtcctctgcagcttcagacaccagctgg
caccagagcggaccgaccggcagctcctggaccaatcaggagtctccaatggaggagtcg
tcttccactgtgctgctcgacagcctcaagtccatctggtccagctccatgatgcagccg
ggcccgtcggcgctggagcagctcctcctgcagcagaaacagaagcagcagcgaggtcac
ggcgccatgaacccgcctcactga
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