Hippoglossus stenolepis (Pacific halibut): 118117558
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Entry
118117558 CDS
T08308
Name
(RefSeq) collagen alpha-4(IV) chain
KO
K06237
collagen type IV alpha
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04382
Cornified envelope formation
hsp04510
Focal adhesion
hsp04512
ECM-receptor interaction
hsp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118117558
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
118117558
09142 Cell motility
04820 Cytoskeleton in muscle cells
118117558
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
118117558
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hsp04147
]
118117558
00536 Glycosaminoglycan binding proteins [BR:
hsp00536
]
118117558
Exosome [BR:
hsp04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
118117558
Glycosaminoglycan binding proteins [BR:
hsp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118117558
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
118117558
NCBI-ProteinID:
XP_035025771
LinkDB
All DBs
Position
11:complement(13071926..13090733)
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AA seq
1669 aa
AA seq
DB search
MRSSLTVVTLCRWILVVFIFVQQLSAGDVEQLCQGRNCSVCRCHPAKGARGSPGKPGEQG
PQGPMGPWGHRGPPGDKGRRGIEGSHGLEGPKGDRGKTGAPGFSGNDGSLGHPGAGGEPG
LPGLDGCNGTMGRPGVPGTHGLDGLNGPLGFPGLKGIKGEPLYGVTLPGLPGERGRDGEH
GLPGGRGLMGPKGHDGFSGPPGPEGSVGREGVRGPPGNPGGSLAGDKGDGGEQGPPGPPG
PEEVIEFPLDFLPLKGYKGDRGLPGPCGPKGNMGDIVDFNRQRNKGEQGILGFLGLPGLP
GIPGIDGQKGPQGFYGEEGLPGLIGRTGPKGYPGDSGLPGPLYLYNGSDARGAKGEHGYQ
GASGIPGDQGYPGMRGPPGPPGLTVSEEPGLPGPPGHPGPKGYKGQPGRYNNFEMNPFLG
PKGTKGLTGPKGGRGLPGRPGCGDYYCEPGVPGDPGDPGFKGSRGQKGREGIKGCQGECE
CRFVVGSVGLPGPPGYPGSPGFPGAQGLIGDPGLKGDEGARGPYGFQGIPGFKGDKGPKG
DSFVASGQGVQGDRGFPGNTGPPGATGRPGKDGLPGPSGDPGPPGYGYAGLPGTKGDPGV
VGPKGFPGIVGTKGPGFPGPTGPPGPKGDHGYPGTPGVTGRPGPPGEIENCCDEEAIGSP
GPKGEPGTPGIPGEPGIHGLQGVPGHLGLKGLRGDDGGTVGVGLPGPPGLNGDPGDPGPY
GIRLDGPPGIPGIPGLPGRKGSTGDILSACPGVIGPAGQPGVIGTKGPRGIPGNPGSPGI
HGRPGQTGHQGEPGVSGDPGATGPPGPSCTVCELDGLPGPPGPPGNPGQRGIPGYLVQKG
LKGDMGPPGHGLKGLIGSPGLPGFPGSPGPSGTIGPSGDTGIDGWPGTKGEIGYPGRAGA
SGLPGRTGPPGPRGKQGEKGFTGQPGDTGDPGLLGNKGLRGLPGLPGPSGRVNMTKGPEG
LSGRRGQPGQQGLGGLKGIRGIPGDSGPEGWPGPPGFKGSVGVPGRVGIPGPPGHPGIKG
FPGPRGYTGHVGDPGDPGPTGNIGIQGIQGLPGAKGEPGKSIGQPGPPGPRGLPGDNRPD
APRRSPGDSGDPGLRGGPGQPGQPGIPGEPGRLGGLGFPGPRGTSGHQGFPGIPGDQGGL
GPTGPTGPSGPQGPPGPPGLDGLDGLRGPKGLKGASGQDIHGPQGLDGFPGVKGLKGHQG
PPGVTFPGPKGLTGPPGDTGLPGFPGEPGYPGTECRTPSPGPHGDVGYEGPSGLPGLPGE
RGPPGTSFSGDRGPTGPPGLTGCKGAMGHQGPPGSHNNPGFIGPKGERGPIGPRGAQGTN
GQQGFPGPRGPKGKTGTAGNRGVRGAPGDSISGLGVAPLGLPGPIGSPGSRGFPGDVGPP
GTPGRKGETGSAGPMGDPGLLGPAGPNGSVGDPGEVGQQGFIGPQGVSGPPGEQGQPGHR
KISRSGHLLVVHSQSVQVPQCPEDSSQLWVGYSLVYLEGQEKAHTQDLGQAGSCLPVFST
MPFSYCNTAACHYASRNDKSYWLSTTAPIPMMPLFGQEISSHISRCAVCETVSPAVAFHS
QDHVVPACPPGWRSLWNGFSFLLHTGEGVNGGGQSLTSSGSCLKDFRTHPFIECQGERGS
CHYFANLYSFWLTTVSETEQFIIPRPGTIKAADKQRRKASQCHVCLRGI
NT seq
5010 nt
NT seq
+upstream
nt +downstream
nt
atgagatcctcacttactgtagtgacgctgtgcaggtggatccttgtggtgtttatcttc
gtgcagcagctcagcgcaggggatgttgagcagctgtgtcaaggtagaaactgctctgta
tgtcggtgtcatcccgccaaaggtgcacgggggtctccagggaagccgggggagcaaggc
ccccagggaccaatgggaccttggggacacagagggccacctggagacaaaggcaggagg
ggaatagagggatcacacggccttgaggggcccaaaggagaccgtggcaagactggtgca
cctggtttctctggtaacgacggctctttaggtcaccctggggcaggtggagagcctggt
ttgccaggactggatggctgtaatgggacaatgggtcgacctggagttcctggtactcat
ggtttggacggtctgaacggtccgctgggatttcctggacttaaaggaattaaaggagaa
ccactgtatggtgttacccttcctggacttcctggggagcgtggcagagatggagagcat
ggtttacctggaggacgaggactcatgggacctaaaggccatgatggcttctctggtcct
cctggacctgagggctcggtaggacgtgaaggtgtcagaggaccaccaggaaaccctgga
ggatcactggcaggtgataaaggcgatggtggtgagcaaggtccacctggccccccagga
ccagaggaagtcattgaatttcctctagactttcttccactcaaaggctacaagggagac
agaggtcttcctggaccatgtggaccaaagggcaacatgggggatatagtagactttaac
agacaaagaaataaaggagagcaaggaatccttggatttcttggacttccgggtcttcct
ggtattcctggtatagatggacaaaagggacctcagggtttctatggagaggaaggactt
ccaggtctcattggaagaactggaccaaagggttacccaggagattcaggtcttcccggt
cccctttacttatataatggaagtgatgccagaggagctaaaggtgaacatggttaccaa
ggggcatctggaatcccaggagaccaggggtacccggggatgcgaggacctcctggccca
ccagggttaacagtatcagaggagccaggccttcctggtccacctgggcaccccggtccg
aagggctacaaaggacaaccagggcgttataacaactttgaaatgaatccgttcctggga
ccaaagggaactaaaggactcactggacccaaaggtggtagaggcctccctggtcggcca
ggatgtggagattactactgtgagcctggtgtcccaggcgaccctggtgacccaggattc
aagggatctcgtggacagaaaggacgcgaaggaattaaagggtgtcaaggggaatgtgaa
tgtaggtttgttgtgggaagcgtaggcctgcctggtccacctggttatccaggatctcca
gggtttcctggagctcaaggactcattggggacccaggtctgaagggagacgagggtgca
agaggaccatatggctttcaaggaattcctggttttaaaggagacaaggggccgaaaggt
gactcttttgtggcaagtggtcaaggtgtccagggtgacagaggatttcctggaaatact
ggtcctcctggagcaacaggtaggccaggaaaggatggcctccctggcccctcaggagac
cctggaccaccaggttatggatatgcaggattacctggtaccaaaggtgaccctggtgtt
gttggacccaaaggttttccagggattgtaggcaccaaaggacctggttttccaggccct
acagggcccccaggacccaaaggagatcatggttatcctggcaccccaggagtaactggc
agaccaggacctccaggtgaaattgaaaattgctgtgatgaagaagcgattggatcacct
ggtccaaagggtgagccaggcaccccaggaattccaggtgagccaggaatacacggtctc
cagggagttccaggacacctaggccttaaaggattgagaggagatgatggtggaactgta
ggggttggactgccaggacctccaggtttaaacggggatccaggtgaccctggtccctat
gggattaggctggatggccctccaggcattccggggataccaggactcccaggcagaaag
ggttcgacaggagacattctctctgcctgtccgggtgttattggcccagctggccaacct
ggggttattgggacaaaaggacctcgtggcattcctggaaaccctgggtctccaggcata
catggccgacctggacaaacaggccaccaaggagagccaggagtcagtggtgaccctggt
gccactgggcccccaggcccatcctgtactgtatgtgaactggatggactcccaggccct
ccaggccctccagggaaccctggacagagaggaataccaggctaccttgttcagaagggt
ttgaagggagatatgggtccacctggtcatggactgaagggtcttataggatctcctggc
ctccctggttttccaggctcacctggacccagcggcaccattggcccttcaggagatact
gggattgatggctggccagggacaaaaggtgaaattggctaccctggtagggccggagca
agtggtttaccaggtcgtactggacctccaggacccagaggtaaacagggagaaaaaggc
tttactggtcaaccaggtgacacaggagacccaggactgctgggtaataaaggtttacga
ggtctcccaggattaccaggcccatcaggacgtgtgaatatgactaaaggcccagaaggg
ctttcaggaaggaggggacaaccaggccaacaaggacttggaggcttaaagggtataagg
ggaataccaggtgattcggggcctgagggatggcctggtccaccagggtttaagggcagt
gttggtgttccaggcagggtaggaatcccgggacctcctgggcaccctggaatcaaaggt
ttccctggtccaaggggatatacaggacatgttggagatccgggagatccagggcctaca
gggaatatagggatacaagggatacagggattgcctggtgccaagggtgagccaggaaag
tcaattggacaacctggtccacccggacccagaggactgccaggggataatagacctgat
gcacccaggaggagtccaggtgattcaggtgacccaggactcaggggagggccaggacag
cccggacaaccaggcattcctggggaaccaggaagactcggaggattaggcttccctggg
cctcgtggcacatctggccatcaagggtttccaggtattccaggtgatcaaggaggtctc
ggcccaacaggtccaactggcccaagtgggcctcaagggccccctggaccaccaggtctg
gatggattggatggacttagaggtccaaaagggttgaagggagcaagtggccaagatatc
catggcccgcaaggactagatggttttcctggagtcaaaggtctgaagggccatcaagga
cccccaggagtcacctttcctgggcctaaaggtctgacgggcccacctggtgacacaggt
cttccaggcttccctggcgaacctggataccctggcacagaatgccgcacaccttcacca
ggaccccatggagatgtaggatatgaaggaccttcaggactcccaggtcttccaggggaa
cgaggtcctccaggcacatccttcagtggagaccgaggaccaactggccccccagggtta
acaggttgtaagggagccatgggccaccaagggcctcctggatctcacaacaatccaggc
tttatcggtccaaaaggtgagagaggtcccattggtcccaggggtgctcaaggaaccaat
ggtcagcaaggtttccctgggccacggggccctaagggaaaaactggtacagctggaaat
aggggtgtcagaggagctcctggtgattccatcagtggactaggggtggctcctctcgga
cttccaggaccaattggttcccccggatctcggggattccctggtgatgtgggtcctcct
gggactccaggacgtaaaggagagacgggttctgcagggcccatgggtgaccctggttta
ctgggtcctgctggtcctaatggctctgttggagacccaggtgaagtcggtcagcaagga
ttcattggaccacaaggtgtttcaggcccacctggtgaacaaggtcaaccaggtcacagg
aagatatccaggtcaggccacctcttggttgtccacagccagtcagtgcaggtgccacag
tgccctgaagacagcagtcagctttgggtgggctacagtctggtgtacctagagggacaa
gagaaggctcacacacaagacctgggccaggctggctcctgcctccctgttttctctacc
atgcctttctcctactgcaacacagctgcctgtcactacgccagccgcaatgacaaatcc
tattggctctccaccactgctcccatacccatgatgccactgttcggccaggagattagc
tcccacatcagccgctgtgccgtgtgtgagacggtgtcacctgcagtggctttccatagc
caggatcacgtggttcctgcatgcccgcctggctggaggagtctgtggaacggcttctct
ttcctcctgcacacaggggaaggtgttaatggcggtggccagtctctgacctcctccggc
agctgcctcaaggatttcagaactcaccccttcatagaatgccagggcgagcgaggctcc
tgtcactacttcgccaacctctacagcttttggctgactactgtgagtgagaccgagcag
ttcatcatcccgagacccggcaccatcaaagcagccgacaaacagcgacgcaaggccagc
cagtgtcatgtctgcctcagaggcatataa
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