Hippoglossus stenolepis (Pacific halibut): 118117572
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Entry
118117572 CDS
T08308
Name
(RefSeq) collagen alpha-5(IV) chain-like
KO
K06237
collagen type IV alpha
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04382
Cornified envelope formation
hsp04510
Focal adhesion
hsp04512
ECM-receptor interaction
hsp04518
Integrin signaling
hsp04820
Cytoskeleton in muscle cells
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118117572
04518 Integrin signaling
118117572
09140 Cellular Processes
09144 Cellular community - eukaryotes
04510 Focal adhesion
118117572
09142 Cell motility
04820 Cytoskeleton in muscle cells
118117572
09150 Organismal Systems
09158 Development and regeneration
04382 Cornified envelope formation
118117572
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hsp04147
]
118117572
00536 Glycosaminoglycan binding proteins [BR:
hsp00536
]
118117572
Exosome [BR:
hsp04147
]
Exosomal proteins
Exosomal proteins of other cancer cells
118117572
Glycosaminoglycan binding proteins [BR:
hsp00536
]
Heparan sulfate / Heparin
Extracellular matrix molecules
118117572
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Collagen
C4
Motif
Other DBs
NCBI-GeneID:
118117572
NCBI-ProteinID:
XP_047197967
LinkDB
All DBs
Position
11:13090734..13114670
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AA seq
1676 aa
AA seq
DB search
MWRPLLVVPLMVFAVMLSGTGATNCVCRRKSRCHCKGVKGSRGDKGLRGVTGSPGLDGRP
GPTGYAGPMGAKGNTGSDGHVGPKGDPGPEGKEGFAGSHGLPGIPGLQGPPGPLGAPGCN
GTDGEDGPPGIHGALGIDGNPGHPGLRGPKGESRTSASSVEGPPGPPGRDGEQGAPGSRG
ETGPPGDPGPRGNDGFLGRPGAQGSKGQGGTGGIPGPQGPKGRPGPHGQPGPPGRIREFL
TDIQQQIEALKGDRGDAGENGCKGEPGDVGYGFDSKGAKGDKGQQGPEGKSGKDGDPGQG
HKGNPGHRGEPGNPGTAGGTGEKGDRGPSGPPGYIHGPVPEPLKGYHGDPGSPGPRGLPG
RQGVVGFPGQQGLPGRASGFYVPGPSGPNGFPGSKGDPGEPGDIYIGLPGLEGDPGDGGL
PGDQGPPGPPEDRTNRITKGVPGMKGIMGIPGAPGYSGTFGIKGEKGESCSQCTGSGHPG
LPGPPGPQGIPGYNQGPCAKGVPGFPGPKGVPGGPGAIGDSGFQGPPGQKGDSHSYHTPG
LKGEIGGPGQPGNPGANGLPGTLGLPGRKGYQGPPGDLYPSTGVEQDKGFPGPPGPLGHP
GPVGFPGPVGYGHAGHPGSKGDIGVPGLPGLPGIPGQKGEPIHIHTKGLPGPPGFKGLPG
DPGNIGYQGLRGTPGIPGTPGEKGERGDVAFPRKLGIPGPKGAKGQPGLPGIPRMGLPGQ
PGSQGPPGVPGLKADSGPGKCGPPGLPGFPGEPGVQGPIGDAGTPGLLGNPGLNGNAGLP
GEKGSQGFIGPPGLPGSKESCNGLSGPEGSPGPNGYPGLPGPNGFPGEKGNPGLPGSGHP
GPRGQPGSPGSSVAGLHGLPGQKGIMGRNGLPGKPGLRGEPGPEGFPGYGLKGFPGILGP
PGQIGSAGPDGAKGSQGPPGMDGEPGPRGPPGTGSPTPIEIIGPPGDPGYIGPPGQTGTH
GDTGSTGPKGQSGTEGGPGGPGPRGPPGAPGAPGIGGAVCEEGSQGPAGVLGDPGFRGPP
GLKGTKGDQGITGGPGLVGKTGQTGYKGVNGEPSYSGYGLPGPAGQKGEPGSSNSELMKG
QKGEPGISGLVGVPGSSGARGNPGPVGDNGLTGYQGAKGSYGPTGLKGHPGPHGSPGKRG
LWGVAGYTGPKGNQGRDGIPGPPGQKGDSIIEGTPGRRGDTGLPGPPGNPGPPGLSVTAS
PGPTGDRGLPGARGVNGPQGLTCREGACLLGLKGDSGHPGFPGRRGSPGLPGPPGPTVAG
LKGDRGNMGPAGIPGYCGPQGDQGLQGPPGARGPPGGPGPIGDSGPPGFQGPRGGTGHPG
YIPGPPGPPGHKGFPGQPGPKGEPVFGKEIYEPGPPGLPGPSGNRGAPGSTGVSGPTGHQ
GQPGIKGVRGSSPLGLPGFPGRKGDTGTAGVPGPEGRTGDPGLKGPPGLPGSGFSCHTDS
FLIVRHSQSIHVPDCPHGSIFIYSGYSLLFINGNEKAHGQDLGTMGSCLPRFSTMPFLFC
DTESNCRYASRNDYSYWLSTDTPIPANMVAIAGDKLASYISRCSVCETTSNVIAVHSQTT
RIPQCPQGWESLWTGYSFVMQTGVGADGSSQPLVSPGSCMESFRQVPFIECHGKGTCNYY
PDSYSYWLASLDPNNMFSKPVHRTVKGPALESVVSRCQVCRKPVTARPGDGRGDSI
NT seq
5031 nt
NT seq
+upstream
nt +downstream
nt
atgtggaggccgctgctcgtggtccctctgatggtgttcgctgtgatgctgtcgggcacc
ggggccacaaattgtgtgtgcagaagaaaatccaggtgccactgtaaaggagtgaaaggc
agcaggggagacaaaggtttacgaggagttaccggttccccaggactggacggccgtcca
ggaccaactggttatgctgggccaatgggagcaaagggcaacacagggtctgatggacac
gtgggaccaaaaggcgatccgggacctgaaggcaaagaaggatttgctggatctcatggt
ttaccgggtatcccgggtttacaagggcctccaggacccctaggggccccaggatgcaat
ggaactgatggagaggatgggcctcctggaatccacggggccctcggtattgatggaaac
ccaggtcatccaggtctgcgtggacctaagggtgaatctcggacgtcagcaagttcagta
gaagggccacctgggccacctgggagggacggagaacagggagccccaggttcccgtgga
gagactggaccacctggggaccctggaccaaggggcaatgatggctttcttggccgtcca
ggggctcagggatccaagggtcaagggggcacaggcgggatcccaggacctcaaggacca
aagggaagaccaggaccacatggacaaccggggccaccaggtcgaattagggagtttttg
actgacatacagcaacagattgaggctctaaagggagatagaggagatgcgggagaaaac
ggctgcaagggcgaaccaggagacgtcggttatggcttcgactctaaaggagcaaaggga
gacaaaggacagcagggtccagaaggaaagtcagggaaggatggggatcctggtcaagga
cataagggaaaccctggccacagaggtgagccaggaaatccagggaccgcaggaggaacg
ggtgaaaagggagatagaggtccttctggtccacccggatatatacatgggcctgtgcct
gagccactcaaaggatatcacggagatcctggttcccctggaccacgtgggcttcctggt
cgtcagggtgttgtgggctttcctggacaacaaggacttccaggccgtgcatctggcttt
tatgtgccaggcccaagcggtcctaatggctttccaggttccaaaggggaccctggggag
cctggggatatttatattggactcccaggtctagaaggagaccctggtgatggaggtctt
cctggggatcagggcccacctggacctccagaagacagaactaacaggattaccaaaggt
gtcccaggaatgaagggaatcatggggatccctggagccccgggatatagcggaactttt
ggaataaaaggagagaaaggggagtcctgtagtcagtgtaccggatcaggacacccaggc
ttaccaggtcccccggggccacaaggcattcctggctacaatcaaggaccatgtgccaaa
ggtgttccaggcttcccaggacctaaaggtgtacctggaggaccaggtgcaattggtgat
tcaggatttcaaggtcctccgggacaaaagggagactcacattcctatcacaccccagga
ttaaagggagagataggaggcccaggacagcctggaaaccctggtgcaaacggtctccct
gggactcttggattaccaggtcgcaaaggatatcaaggccctccaggggatttatatcca
agcactggtgtggagcaggacaagggttttccaggtccaccagggcctttaggtcatcca
ggaccagttggcttccctggcccagtaggatatgggcatgctggacatccaggaagtaag
ggagatattggtgtacctggcctcccaggactgcctggaattccaggccagaaaggggaa
cctatccacattcacaccaaaggactccctggaccacctggatttaaaggtctgcctggt
gatcctggaaacatcggttatcaaggattgcgaggtaccccaggaataccaggtacccca
ggagagaaaggagaaagaggggatgtggcatttcccagaaagctcggaattccagggcca
aaaggtgcaaaggggcagccaggactcccaggtattcctcgtatgggattgcctggtcag
ccaggttcacaaggccctcctggtgttccgggactgaaggctgatagtggtcctggaaaa
tgtgggcccccaggcctgccagggtttccgggagaacctggagtgcagggacctatagga
gatgctgggactcctggtctacttggaaacccagggctaaatggcaacgctggtcttcca
ggagaaaaaggaagtcaaggctttataggcccccccggactacctggtagcaaggagtca
tgtaatggtttatctggaccagagggatcaccaggacccaatggttatccaggactccca
gggcccaatggcttccctggtgagaaggggaatccaggtttaccagggtcgggtcatcct
ggcccccgtggtcagcctggttcccctgggtcatcagtggcgggcttacatggacttcct
ggacaaaaagggattatgggacgaaacggcctgcctggtaaaccaggactgagaggagaa
ccaggaccagaaggctttccaggatatggactgaaaggattccctggaattctaggacca
ccaggccaaataggttccgctggccctgatggagccaaaggttcccagggtccaccaggc
atggatggagaacctggtcccagaggtcctccaggcactggatcaccaacaccaatagaa
atcattggacccccaggagaccctggctatattggtccccctggtcaaactggtacccat
ggagacactggaagtactggaccaaaagggcaaagcgggacagaaggaggaccagggggt
cctggaccaagaggtcctccaggtgctccaggtgctccaggtattggtggagcagtgtgc
gaagaaggaagtcaaggacctgctggagtcctgggagacccaggatttagaggacctcca
ggcctgaaaggcacaaaaggagatcaaggtatcactggagggccgggtctagtcggcaaa
acaggtcaaactggatacaaaggggttaatggagaaccaagttactctggatatggactc
cctggaccagccggacaaaagggtgaaccaggatcaagcaatagtgaattgatgaaaggt
cagaaaggagaacctggcatcagtggactagtaggtgtaccaggaagttcaggagccaga
ggaaacccaggacctgttggagacaatggtttaacagggtatcaaggagctaaaggttca
tatgggcctacaggacttaaaggacacccaggacctcatggttcaccaggcaaacgagga
ctgtggggtgttgctggttatacaggtccgaaaggcaaccagggcagggatgggatccct
ggaccaccaggacaaaaaggggactccataattgaagggacacccggaagacgtggtgac
acaggtctaccaggtcccccaggaaaccctggtcctcctggcttgtctgtgacagcgagt
cctggaccgacaggagacagaggacttccaggcgcacgtggggttaatggtcctcagggg
ctaacgtgtagagaaggggcatgtttactgggattaaaaggagacagtggccatcctgga
tttcctggcagacgaggctctcctggtttacctggccctccaggtcccactgtagcgggg
ttaaaaggagacagagggaacatgggtcctgcaggaatcccaggttattgtggtccacaa
ggagatcaagggcttcaaggaccacctggtgcaagaggcccacctggaggcccagggcca
ataggtgactcaggtcctcctggattccaaggccctcgaggtgggacgggacaccccgga
tacatcccaggcccgccgggaccacctggacacaaaggttttcctggacaacctggccct
aaaggcgaaccagtatttggcaaagaaatctatgaaccagggcctcctggcttacctggt
ccctccggaaatcgaggagccccaggaagcacgggagtgtcaggaccaactggccatcaa
ggccagccaggaatcaaaggggtgcgtggttccagcccactcggcctgcccggttttcct
ggccgcaagggagacacaggaacagccggggttccaggtccagaaggtagaaccggagac
ccaggcctgaagggtcctccggggttgcccggtagcggtttttcatgtcacactgacagt
ttcctgatagtgagacacagtcaaagcatccatgtccctgactgccctcatggctccatc
ttcatctactctggatactccctcctcttcatcaatggaaatgagaaagctcatggtcag
gacctcggcacaatgggaagctgcctccctcggttctccaccatgcccttcctgttctgt
gacacagagagtaactgtcgctacgcttctcgaaatgactactcgtactggttgtccact
gacactcccattcccgccaacatggttgccatcgcaggggataaactggcctcctacatc
agcaggtgctcagtgtgtgaaaccacctccaatgttatagccgtccacagccagacaact
cggatacctcaatgtccccagggatgggagtccctgtggactggatactcatttgtcatg
caaacaggcgttggtgcagatggctcatcccagcctctggtttctcctggctcatgtatg
gaaagtttccgccaagtgcccttcattgaatgtcacggcaaggggacatgtaactactac
cccgactcctacagctactggttggcctccctcgaccccaacaacatgttcagtaaacct
gttcatcggaccgtcaagggacccgctctagaaagtgttgtcagccgttgtcaagtctgt
aggaaaccagtaacggctcgcccaggtgacggacgtggggacagtatttaa
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