Hippoglossus stenolepis (Pacific halibut): 118117611
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Entry
118117611 CDS
T08308
Symbol
rb1cc1
Name
(RefSeq) RB1-inducible coiled-coil protein 1
KO
K17589
RB1-inducible coiled-coil protein 1
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04140
Autophagy - animal
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09140 Cellular Processes
09141 Transport and catabolism
04140 Autophagy - animal
118117611 (rb1cc1)
09180 Brite Hierarchies
09181 Protein families: metabolism
01009 Protein phosphatases and associated proteins [BR:
hsp01009
]
118117611 (rb1cc1)
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hsp04131
]
118117611 (rb1cc1)
03029 Mitochondrial biogenesis [BR:
hsp03029
]
118117611 (rb1cc1)
Protein phosphatases and associated proteins [BR:
hsp01009
]
Protein serine/threonine phosphatases
Phosphoprotein phosphatases (PPPs)
Protein phosphatase-1
PP1-interacting proteins (PIPs)
118117611 (rb1cc1)
Membrane trafficking [BR:
hsp04131
]
Autophagy
Autophagosome formation proteins
ULK complex
118117611 (rb1cc1)
Mitochondrial biogenesis [BR:
hsp03029
]
Mitochondrial quality control factors
Mitophagy factors
Parkin-independent mechanism factors
118117611 (rb1cc1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
ATG11
ATG17_like
TBK1_ULD
ubiquitin
Motif
Other DBs
NCBI-GeneID:
118117611
NCBI-ProteinID:
XP_035025861
LinkDB
All DBs
Position
11:complement(16214378..16228401)
Genome browser
AA seq
1637 aa
AA seq
DB search
MKLYVFQVNNGCTLTFDTDLAVQTVLELKHAIQAKYKIATQHQVLVVNGGECMAAERRVC
SYSAGTETNPIFLFNKEMILCDRDPTIPKTTFSIESEIQVKVEESLLMPAVFHTVASRTQ
LALEMFEVAKKLCSFCERLVHDEHLQHQGWAAIMANLDDCTLSYQKLLVKFDAAYSNYQH
ELEEIKVKLTKLGTAVAVMARIPLLESLTRHSYRESMEKSSPTPGKDSDGTEEEKSSESV
RYTAEAKRPSKLSASFSASQAATCKPTGDHETNEMTDRGGLRAALLDDDDDDDDDDDSDD
DDDDDTPEFANPSSFNVTLLDWINVQDRPNDVESVVRKCFDSINRLDPRVIQPFLTDCRD
TIGKLDNQNMKAIKGLEDRLYALDQMIASCKKLVNEQKELAQGFLANQKRAENLKDTSVL
PDLCLSHTNQLMIMLNNHRKLLDIKKKCTTAKQELANNLQVRLKWCCYVMLHADQDSEKL
QALLRLLTELLERVRVVEALSTVPQMYCLAVVEVVRRKMFMRHYREWAYALVKDGKRLYE
AEKFKRESFGKLFRKSFLRNRLFRGLDSWPPTSFCTRKPRRFDDELPDISLEDLQYLKSC
CPLEVQPFLMVPTMCDFEPLNRHVETLHQLVQAAQSVDEMSQTITDLLNEQRASYCHSSH
RSTMQTPQSESIPGSTTPGSSKTPTSLGLQGPGCQPLHVPVPAPLEDLSPDSIDAQTFDF
ETIGHPNMDPVLQQGSLDLDSLVESPESDFMSAVNEFVIEGNLTSPNPISDPTSPDMMVE
SLYSSVINAIDNKRMQDTTTLERENFRITVLKQVIEKYQSAAEESHSNLRSVKDDLHHLR
GLVLKEQHDFGFDLRDMTTEVRNVVDNFCLTHELKLKEQHQSELLSVRQELEKQVQTLTE
ENQVNQNIVRDVQRAMLELEGLMERKEKELTQLENERERWMETERGQTDRIKNLEQLISD
QAEEIKTLSAARDSLTSQLENLHFEIERGQQKIRQELEAVEQTHLKELEVRMKQEHKAQL
ETLTQDNKEALEHLASENSTNLSEAADQHATALGEKENQIKDLEARITELAELRCKLEVE
LALKESETEEVRLLFEEAKTQQAEAVKSQVEAEYEVGLAELRSLMRNEKDHCISELVDRH
EEETILLHNELSSLQKQSQDAETNHSEQQQKLKQELEQQVTQSEEKEKQFTSFRELEQEL
RTLVNKLQTENDLLSQKVEQDRRATETELEKQESTKVASPEAFKELEQQKEEMENRLLKK
IKKLESELHERRSSKSDEGSPLRAEEIADAAAPLSLDSALQERLQQERASLLSQIELLEK
KKNEEIQNLKTSLIAESQTNFNTVLTREKLKKEQIIHDLTEKLHNVTQQQEKDKALIESL
SEDRASVIQEKKHLEEELNRLRSTALVSSAFFTPHPSALEVTEAGASGALGALGASGALG
ASAAGAAAARALHVAGYCSSEPMAETDRLACVAAIRDDENVDSAVEASMVTVHDNILMSE
EKQRILLLERTLHMKEEENKRLSQRLMSQSMSSVSSRHSDKIAIRDFQVGDLVLIILDER
HDNYVLFTVGPTLYFLHSESLTALDLKPASGTSRRPWVLGKVMEKEYCQAKKAQNRFKVP
LGTKFYRVKAVPWNRKV
NT seq
4914 nt
NT seq
+upstream
nt +downstream
nt
atgaagttgtatgtgttccaggtcaacaatggctgcacgctgacatttgacactgacctt
gctgtccaaactgtactggagcttaaacatgccatccaagccaaatataagattgcaact
caacatcaagtccttgttgtcaatggcggggaatgtatggctgcagagagacgggtctgc
agctacagtgctggcactgaaacaaatcccatattcttgttcaacaaagagatgatcttg
tgtgaccgggatccaacgatccccaaaaccaccttctcgattgagagtgagattcaggtc
aaggtggaggagtctctactgatgccagctgtttttcacactgttgcctcacgaacacaa
cttgctctggaaatgtttgaagttgccaagaaactttgctctttctgtgaacgtttggtt
catgatgaacatcttcaacaccaaggctgggctgctatcatggctaatctggacgactgc
actctgtcttatcagaagttgcttgtaaagtttgacgcggcatactcaaattatcaacat
gagttggaagaaattaaggtgaaacttacaaagttagggacagcggtagctgtaatggct
aggatacctctgctggaaagtttgacaagacacagttacagagagagcatggagaagtcc
agtccaaccccaggaaaggattcagacgggacagaagaagaaaagtcctctgagtctgtg
cgctacactgctgaggcaaagaggccctccaagttatcagcatccttctctgcttcacaa
gcggccacatgtaagccaaccggtgaccatgaaacaaatgaaatgactgacaggggtggg
ctgagagctgcgctattagatgatgatgatgatgacgacgacgatgatgacagcgacgat
gatgacgatgacgacactccagagtttgccaacccgtcctccttcaatgtcacactatta
gactggatcaacgtgcaagacagacccaatgatgtggaatcagttgtgaggaaatgcttt
gactccatcaataggcttgacccacgggtcattcaacccttcctgacagattgtcgtgac
actattggtaagttggataatcaaaacatgaaagccatcaaggggcttgaggacaggttg
tatgctcttgaccaaatgattgcaagctgtaagaagttggtgaacgaacaaaaggaactt
gctcagggatttttggccaatcagaagcgtgctgaaaacctgaaggatacatctgttctg
cccgacttgtgtctgagtcacaccaaccagctgatgatcatgctgaacaaccacaggaag
ctgctcgacatcaaaaagaagtgcactactgccaaacaagaacttgcaaacaaccttcaa
gtcagactcaaatggtgctgctacgtgatgcttcatgcagaccaggacagtgagaagctt
caggctctactcagactcctgacagagctattggaacgagtgagagtggtggaggccctc
agtactgtgccccagatgtactgcttggcggtggtggaagtcgtcaggaggaaaatgttt
atgcgccactacagagagtgggcttatgcacttgtgaaagatggcaaacgactgtacgag
gccgagaaattcaaaagggaatccttcgggaaactctttaggaagtctttcctcagaaat
cgtttgtttagaggactcgattcatggcctcccacatcattctgtacacgaaagccgaga
aggtttgacgatgaacttccagacatttcacttgaggacctgcagtacttgaaatcttgt
tgtcctttggaggtgcagcctttccttatggttcctacaatgtgtgactttgagccctta
aatcgtcacgtagagacgcttcaccagctggttcaagcagcgcagagcgtggatgagatg
tcccaaactatcactgacctgttgaacgaacaaagggcatcctattgtcatagctctcac
agatcaaccatgcagaccccacagtctgaaagtatacctgggagcaccacaccggggtcc
tccaaaaccccaacctctcttggccttcagggtccaggctgccaacccctacacgttcct
gtcccagctcctttggaggacttgtccccagacagcattgatgcacaaacgtttgacttt
gaaaccatcggccatccgaacatggacccagtcctgcagcagggctccctcgacctggat
tctctagtagagagcccagagtctgatttcatgtctgctgtcaatgagtttgtgattgaa
gggaacttgacctccccgaaccccatcagtgaccccactagtcctgatatgatggtagag
tctctgtactcttcagtgatcaatgccatcgacaataagcgtatgcaggacaccacaaca
ctagagagggagaattttaggatcactgtcctcaaacaagttattgagaagtatcagtct
gctgcagaggagtcccattccaacttaagaagtgtaaaggatgatctccatcacttacgg
ggtctagtgttaaaagaacaacatgactttggctttgacctgagggatatgaccacagag
gtgcgcaacgttgtggacaacttctgcctgacccatgaactgaagttgaaggagcagcat
caaagtgagctgctctctgttcggcaagagcttgagaagcaggttcagacactaacggag
gaaaaccaagtaaaccagaacattgtgagagacgtccagcgtgcgatgctcgagctggag
ggccttatggagcgcaaggagaaagaacttactcagctcgagaatgagagagagcgatgg
atggaaacggagagaggccagacggataggatcaaaaatctggagcagttgatcagtgat
caagctgaagagatcaagacgctttccgccgcaagagactccctgaccagccagcttgag
aatctgcactttgagattgaacgtggccagcagaagattcgacaggagttggaagctgtg
gagcaaactcacttaaaggagctggaggtcagaatgaagcaggagcacaaggcacagctg
gagactcttacccaagataataaggaggctctggaacatctggcttctgaaaacagtaca
aatttaagtgaggcagctgatcaacatgccactgctcttggagagaaagaaaaccaaatc
aaggacttggaggctcgtataactgagcttgctgaactccgttgcaaactcgaggtggag
ttggccctcaaagagtcagagactgaggaggtgagactcttatttgaggaggccaagact
cagcaggccgaggctgtgaagtctcaggttgaagcggagtatgaagtgggcctggcagag
ctcaggagtctcatgaggaatgagaaggaccactgcatctccgagctggtggacagacac
gaggaggaaactatcttgttgcacaatgagctctcctccctgcagaagcagtcccaggat
gctgagacaaaccattcggagcagcaacagaaacttaagcaggaattagagcagcaagtg
actcaaagtgaagaaaaagaaaagcagttcacgagcttccgagaactggagcaagagctg
aggactctcgtcaacaaactacagacagaaaacgatctgctctcccaaaaagtagagcag
gacagacgagccactgagacagaactcgaaaaacaagagtccaccaaggttgcatcacca
gaagcctttaaagagttggagcagcagaaggaggagatggaaaacagactgttaaagaaa
atcaaaaaacttgagagtgagcttcatgagagacgatcttcaaaaagtgatgaagggtcg
ccgctgcgcgccgaggaaatcgcagatgccgcagcgcctctgtctctggactctgcacta
caagagcggctgcagcaggagagggcctcgctgctgtcccagatcgagctcctggagaag
aagaagaatgaggagatacagaacctcaagacatcactaatcgcagaatcgcagactaac
ttcaacactgttctaacccgagagaagctgaagaaggagcagatcatccatgacctcaca
gagaagctgcacaatgtgacccaacagcaggagaaggacaaagctctgatagagtctctc
tctgaggaccgggcgagtgtcattcaggagaagaaacacttggaagaagagcttaatcgc
ctgcgcagcactgcactggtctcctctgccttcttcacccctcacccatcagctctggag
gtcacagaggcgggagcatcaggagcactgggagcactgggagcatcaggagcactagga
gcatcagcagcaggagcagcagcagccagagctctgcatgttgctgggtactgctcctcc
gagcccatggctgaaactgacagactggcctgtgtagcagccatacgagatgacgaaaat
gtcgactcagcggtggaagccagcatggtgacagtccatgataatatcctgatgtcagag
gagaaacagcggatactcctactcgagaggactttacacatgaaggaagaagaaaacaag
cgcctcagtcaaagactgatgtctcagagcatgtcgtctgtgtcctcacggcattcagac
aaaatcgccatcagagacttccaggttggtgatttggttctaatcatcctggatgaaaga
cacgacaactatgtgctgttcacggtcggacccaccctctacttcctccactcggagtct
ctcactgcactggacctcaaaccagcttcagggacttcaagacggccgtgggttcttgga
aaagtgatggaaaaggaatattgccaggcaaaaaaggcccagaacaggttcaaggtccct
ttaggaaccaagttctacagagtgaaagctgttccatggaacagaaaagtataa
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