Hippoglossus stenolepis (Pacific halibut): 118117616
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Entry
118117616 CDS
T08308
Symbol
xrn1
Name
(RefSeq) 5'-3' exoribonuclease 1
KO
K12618
5'-3' exoribonuclease 1 [EC:3.1.13.-]
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03008
Ribosome biogenesis in eukaryotes
hsp03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
118117616 (xrn1)
09123 Folding, sorting and degradation
03018 RNA degradation
118117616 (xrn1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsp03019
]
118117616 (xrn1)
03009 Ribosome biogenesis [BR:
hsp03009
]
118117616 (xrn1)
03016 Transfer RNA biogenesis [BR:
hsp03016
]
118117616 (xrn1)
03036 Chromosome and associated proteins [BR:
hsp03036
]
118117616 (xrn1)
Messenger RNA biogenesis [BR:
hsp03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
Common to processing body (P body) and stress granule
118117616 (xrn1)
mRNA degradation factors
5'-3' decay
5' exonucleases
118117616 (xrn1)
Ribosome biogenesis [BR:
hsp03009
]
Eukaryotic type
Pre-60S particles
RNases
118117616 (xrn1)
Transfer RNA biogenesis [BR:
hsp03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
118117616 (xrn1)
Chromosome and associated proteins [BR:
hsp03036
]
Eukaryotic type
Gene silencing
piRNA pathway
118117616 (xrn1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
XRN_N
XRN_M
XRN1_D2_D3
XRN1_D1
SH3_12
Dicer_dimer
CR_prot_dom_plant
Motif
Other DBs
NCBI-GeneID:
118117616
NCBI-ProteinID:
XP_035025870
LinkDB
All DBs
Position
11:4679928..4701915
Genome browser
AA seq
1718 aa
AA seq
DB search
MGVPKFYRWISERYPCLSEVVKEHQIPEFDNLYLDMNGIIHQCSHPNDEDVHFRISEEKI
FADIFHYLEVLFRIIKPRKVFFMAVDGVAPRAKMNQQRGRRFRSAKEAEDKIKKALDKGE
VLPTEARFDSNCITPGTDFMARLQEQLKYFVHNKISTDKMWQNVRVFLSGHQTPGEGEHK
IMEFIRSENTRPGHDPNTRHCLYGLDADLIILGLTSHEPNFSLLREEVRFGGKKSQKRIT
APEETTFHLLHLSLMREYIDYEFSGLRNQLGSDYDLERIIDDWILMGFLVGNDFIPHLPH
LHINHDALPLLYKTYISVLPSLGGYLNDNGHLNLRTFEKYLEKLAEFDREHFSDVFVDLK
WFESKVGNKYLNEAAGLAAEKEAAYKNTKKTEDSSVSLTSSEGAARERKGKTAEDDDEED
DMFETEFRQYKRTYYMTKMGVDVVSDEFLANQAKCYVEGIQWILHYYFHGVQSWSWYYPH
HYAPFLSDIRNISGLKLTFDIAKPFMPFQQLLAVLPAASMELLPASYRHLMTSENSPIIE
YYPLDFKTDLNGKQQEWEAVVLIPFIDERCLLAAMDPCNHNLTKEEKGRNCHTECAVYSY
DKEMDVPYTSCLPQLFPDILHCHSRVEHIPMDAWHVRLDHVHRRLDRSSLYFCGFPTLQH
IKHKFFKKKSGVVVFQQSSRGENMMLQIIPSDEGETICDDAAVQVLGKSVFVNWPHLEEA
RIIAVSDGDTKFCLEEHPSVQRLYDGSSTPPPTRVIRMSDKDQKDWVKDVQGITEYFLRR
KGIMVTETSVVLYGQLLTGRKYVPKADGVVELEKQWAKQILPFAYQTVVKDIEAFYSSMT
CFKSLDELFPQATTVFMVGNPYYGNAGEVQDSSDVIKDGRVRVVFNVPHEPQLEPLIQNQ
HKYCVKYSPGYVLASHLGITSYLVSRFSGSIFIGRGSKKNPCGEQKANVGLNLKFNKKNE
EVPGYTKKTEKEWLYSAAVEDLLGEYLDRFSEVFNLVSRNSHDDVFYEDDVWPAAEQNGA
QKVSEITSWLKSHPVSSISRASCDLQVLDSAIVERIEDAVEKTKVKKSTRKVRVTVKPHL
LFRPLEQQQGVVPDPDAEYRLFDRVVNIRESFSVPLGLRGTVVGIQGAEREAEVLYEVLF
DEEFAGGLNIRCTSLRGYRLPPCALINLSHGGRVDHTSHKLTAIVKPQPASGANFHSHRQ
MTGLNHSPRSPFIPTQHNNKHSGGKAASQGNRNSPSKGPIQKQQGRNKEEYGNVWQSMQS
MGPPNKPPAHWQNNEGHTQQGKNLHTTSNNAAPVGGIRLLKKNEEPDFLLPSQNTGNKAS
TEFEDLIASLKISTGNQQTPPPPAPPQAPTTQSDGPLSPQSFAMKGTLVLKEMLKIDSGT
GSPPFLDTDHTPPSGGQQQNRRRSSKKLAAKMNSPHGDIASPVSAASPNLSNAVFTSKVS
ELACVCVGLGMVPPDFSFMRNRQGHVVCQVKLSNGLMVHGPQCQSENDAKEKAAFFALQR
LNSVGSGFPLPPALYPGVGQIRPPPMGAMTRVFNQQGGILLPPQGFGPGPGPMWGMALPP
HHQNQQFYGAAGTFPGAARPQPAPATVPIGSHNQFIPLQVTKKRVSANKKNQETREFYSA
AHTVARSHSHKSPNQPSGQFQFHSEPQSGQVNQTHQHATNSNPTMSATSLGDGLSTTAAS
PHTPPRQNNPPTGHTPGSASKRKHRKLAVNFEAAKVSE
NT seq
5157 nt
NT seq
+upstream
nt +downstream
nt
atgggggtcccgaaattttaccgatggatttccgagcgctatccgtgtctcagtgaagtt
gtaaaggaacatcagatcccggagtttgacaatctctatctggacatgaatgggatcatc
caccagtgttcccaccccaacgacgaagatgtccactttcgcatctcggaggagaagatt
tttgctgacatcttccattacctggaggtgctcttcaggatcattaagccccgcaaggtc
ttcttcatggctgtggatggtgtggcaccgagagcaaagatgaaccagcagaggggaagg
agattcaggtccgccaaagaagcagaggacaagattaaaaaagccctggataaaggagag
gtccttcctacagaagctcgcttcgattccaactgtatcactccaggcactgacttcatg
gcaagacttcaggagcagctcaaatattttgtacacaacaaaatctccactgacaagatg
tggcagaacgtcagagtgttcctgtctggccatcagaccccaggggaaggagaacacaag
atcatggagttcattcgctctgagaacacaaggccgggtcacgaccccaacacccggcac
tgcctatacggcctggatgctgacctgataatattgggtttaaccagccacgagccaaac
ttctccctgctgagagaagaggtccgcttcggaggaaagaaatcccagaaaaggataacg
gctccagaggagacaacttttcacttacttcatttgtcgctgatgagggagtacatcgac
tatgagttctctgggctcaggaatcagcttggttctgattatgacttggagcgaataata
gatgactggattctaatgggcttccttgtgggaaatgatttcatccctcacctccctcat
ctccacattaaccatgatgctttgcctttgttgtacaagacctacatcagtgtacttccc
agcttgggaggttatctgaatgacaacggtcatctaaacctccgaacctttgagaaatac
ctggaaaagttggctgagtttgaccgggaacattttagcgatgtgtttgtggacctgaag
tggtttgagagtaaagtcggtaacaagtatctgaacgaggcagctggacttgcagcagag
aaggaagctgcatacaaaaacacaaaaaagacagaggattcttctgtcagtctgacctca
tcagaaggagcggctagagaacgaaagggaaagacggcagaagatgacgatgaggaggac
gacatgtttgaaaccgaattcagacaatacaaacgcacctactacatgacaaagatgggc
gtggatgtggtttctgatgagtttcttgccaatcaggccaagtgttatgttgaaggcatc
cagtggattctccactactatttccacggggttcagtcctggagctggtactacccccac
cactacgcccccttcctgtctgacatcaggaatatatctgggttaaaactgacctttgat
atagcgaaacccttcatgcccttccagcagcttctggccgtcctgcccgctgccagtatg
gagctgctccctgcgtcttacaggcacctgatgaccagtgaaaattcgcccattatcgag
tactacccacttgactttaaaacggacctcaatggcaagcagcaggagtgggaggctgtg
gtgctcatccctttcatagatgagaggtgtttactagcagctatggatccctgcaatcac
aacctgactaaagaggagaaaggcaggaactgccacacggagtgcgcagtctactcgtat
gacaaagagatggacgtcccatacacgtcctgccttcctcagctgttccctgatatcctc
cactgccactccagagtcgagcacatccccatggacgcctggcatgtgcgtttggaccat
gtccacaggcgactggatcgctcgtctctgtacttctgtggcttccccactctgcaacac
atcaaacacaagttctttaagaagaagagcggtgtggtcgtgttccagcagagcagcaga
ggggagaacatgatgctccagattattcccagcgatgaaggagagacgatatgtgacgat
gctgctgtgcaagtactggggaagtctgtgttcgtgaactggccccatctagaagaagct
cgcatcattgcagtgtcagatggagacaccaagttttgcctggaggaacacccaagtgta
cagagactgtatgacggctcctccactccccctcccaccagagtcatccgtatgtcagac
aaggaccagaaggattgggtgaaagatgttcagggaatcactgaatatttcttgagaagg
aaaggcatcatggtgactgagacatcggtggttttgtacggccagttgctgacaggaagg
aagtatgtccccaaagccgatggagttgtggaactggagaagcagtgggcgaaacaaatt
ctccccttcgcctaccagactgtggttaaggacatcgaggccttttactcgtctatgacg
tgttttaagagcttggatgagctctttccacaagcaacgacggtcttcatggtggggaac
ccgtactacggtaacgcgggggaggtgcaagattccagtgacgtcattaaagacggtcga
gtccgtgtggtcttcaacgtgccgcatgagccacagctggagcctttgatccagaatcag
cataaatactgtgtgaaatacagtcctggatatgttctggcgtctcatctcggcatcacc
agctacctcgtgtcccgcttctcaggaagcatctttattgggagaggctctaagaagaat
ccttgtggggagcaaaaagccaacgttggcttgaacctgaagttcaacaagaagaacgag
gaggttcctggatacaccaagaaaactgaaaaggagtggctctactcggctgctgtggag
gacctgctaggtgaatacctggacagattttctgaggtattcaacctggtgtccaggaac
agtcatgatgatgttttctatgaagatgacgtctggcctgcagcagaacagaatggggcc
cagaaagtttctgaaatcacatcatggttgaaaagtcacccagtcagctccatcagcagg
gcgtcatgtgatctgcaggtgctggactctgccattgtggaaaggatcgaggatgcagtt
gagaaaactaaggtgaagaagagcactaggaaagtccgcgtgactgttaaacctcatctg
ctcttcaggccgttggagcagcagcagggtgtagttccagacccagacgcagagtatcgc
ctgtttgacagagtcgtcaacatcagggagagcttcagtgtcccactggggctcagagga
actgtcgtcggtattcaaggagcggagcgtgaggcagaggttctctatgaagtgctgttt
gatgaagagtttgctggtggtcttaacatcaggtgtacatcactccgtggttaccgcctc
cctccctgcgctctcatcaatctttcccacggtggccgagtggatcacacctcccacaaa
ctcaccgccatcgtcaaacctcagcccgcaagtggcgctaacttccactcacacaggcag
atgactggcctcaaccattcgccaaggtcaccctttatacccacacagcataacaacaaa
cacagtggggggaaggcagcctcccagggcaacagaaactccccctctaaaggtcccatc
cagaaacaacagggcaggaataaagaggagtacggaaatgtgtggcagtccatgcagagc
atgggccctccgaataaacctcctgcccactggcagaataatgaaggacacacccagcag
gggaagaacctgcacacaacctctaacaatgctgccccagttggtggcatcagactgttg
aagaaaaatgaagaacctgacttccttctcccttcacagaacacaggcaataaggcttcg
actgagtttgaggatctcattgccagtctaaagatctctacgggtaatcagcagacccca
cctcctccagctcctccacaggcacccaccacccagtcagatggcccactgtctccacag
tccttcgccatgaagggaaccctggtactgaaggagatgctgaagattgattccggcaca
ggaagcccccctttcctggacactgatcacacacccccctctggaggccagcagcagaat
agaagacgatcatctaagaaactagctgcaaagatgaattccccccatggtgacatagct
tctcctgtatcagccgcctcccccaacctctccaacgctgtgtttaccagtaaggtgtca
gagctggcatgtgtctgtgtggggttaggcatggtaccacccgatttcagctttatgcgc
aacagacagggtcacgtcgtgtgtcaggtgaaactatccaatggactgatggttcacggc
ccacagtgccagtctgaaaatgatgccaaggagaaagctgccttctttgccctccaaaga
ctgaactcagtgggatcgggcttcccactcccacctgctctatatccaggagtgggccag
atacgacctccgcccatgggagccatgacccgggtctttaaccagcaaggtggtatactg
ttgcccccgcagggttttggccctggccctggccctatgtggggaatggcactgcctccg
caccaccagaatcaacagttttatggagccgcagggaccttccctggtgccgcccggccc
cagcctgcaccagcaacggtgcccatcggctcccacaaccagttcatcccgttacaggtg
accaagaagcgggtctcggccaacaagaagaaccaggaaactcgagagttttacagcgcc
gcacataccgtggccaggagccactcacacaaatccccgaaccagccctctggccaattt
caatttcacagtgaaccacagagcggtcaggtcaaccagacccaccaacatgccaccaac
agcaaccccactatgtccgctaccagtctaggtgatggtctttccacaacggccgcatcc
ccgcacacccccccgaggcaaaacaacccaccaacaggtcacacccctggctccgcctcc
aagaggaagcacaggaagctggcggtcaacttcgaggcggctaaagtctcagagtga
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integrated database retrieval system
