Hippoglossus stenolepis (Pacific halibut): 118117625
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Entry
118117625 CDS
T08308
Symbol
ncstn
Name
(RefSeq) nicastrin
KO
K06171
nicastrin
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04330
Notch signaling pathway
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09130 Environmental Information Processing
09132 Signal transduction
04330 Notch signaling pathway
118117625 (ncstn)
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Gene cluster
GFIT
Motif
Pfam:
Nicastrin
Ncstrn_small
Peptidase_M28
Motif
Other DBs
NCBI-GeneID:
118117625
NCBI-ProteinID:
XP_035025891
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Position
11:20990344..21001248
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AA seq
700 aa
AA seq
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MDPLSNKWIIHLLVCCVFVGVGCNSVDKKIYVNLNYTVSCVRLLNATHQIGCQSSLSGNV
GVLHVLESEEKLDWVLSSGPNPPYIVILESRLFTRSIMMKLKSASRRVAGVAVVAPNTNL
GEAFSPHTTCPNENSGVYSETYDPVLANCNTTVWNPLGNGLSYEEFDFPIFSLKDDNDTQ
VIRQCYSDHNLPVNGTPQYPLCAMELYSHMFAVTDTATCMRRSDVNFSINPEMVCDPLGD
YNVWGSTRPVNNTAKGHKMWESVVIAAARLDSRSFFFDIAPGAESGVSGFVTLLAAAHAL
RDITQEAPPNRTILYTFFQGETFDYIGSSRMVYEMENSQFAVDLDNIHSVLEVGQVGLRK
DSRLWLHTDPVSRKNSSVNKEVEELIANLHSAATNLSVLPDEPIVSQPLPPSSFQRFLRA
RSIPGVVLEDHKSEFTNMFYESMYDNGEYMNLSYPPNLTPQEQLEHVTERAKALAEVATL
VARALYKQAGGSQTMLDKIKADPQIVTQMLYGFLVRTNNSWFQQLIPSDFMSHLTNGPPN
LYVGAIQQSSEPTVLVQFLLANLTGSTINITRENCQNQREDEKDKESKHIYSYWWIQGAA
PPNSTQREGYCVRSSARLSKAVSPAFDLQQFTSKDYSTWTESRWKPIKGRIFLVASHELE
MLTLGVGVGILVTSLLLTYFISAKADILFSSGREPANATY
NT seq
2103 nt
NT seq
+upstream
nt +downstream
nt
atggatccgctctcgaacaagtggattattcatctgctagtttgttgtgttttcgtgggt
gtcggctgtaattctgtggacaagaagatttatgtgaatctcaattacactgtctcgtgt
gtgcgactgctcaacgcaacgcatcaaatcggctgccagtcgtccctgtcgggtaatgtg
ggcgtgcttcatgtgctggagtcggaggagaagctggactgggtcctgagctcgggtccc
aatcccccttacattgtcatcctggagtcccggctcttcaccagatccataatgatgaag
ctgaagagcgcctccaggagggtggcaggcgttgccgttgtggcaccgaacacgaacctg
ggggaggccttttccccacacaccacctgtcccaacgagaactcaggtgtttattcagag
acctacgatccagtcctggctaattgtaatacgactgtgtggaaccctctgggaaacggg
ctgtcctacgaggagtttgatttccccatattctccctgaaagacgacaacgacactcag
gtcatacgacagtgttactcggaccataaccttcctgtgaacggcactcctcagtacccg
ctgtgtgccatggagctctactcacacatgttcgctgtcaccgacacagccacctgcatg
aggagaagtgacgtcaacttcagcatcaacccagagatggtgtgtgacccactgggggac
tataatgtgtggggctccaccaggccagtcaataacacggccaagggccacaagatgtgg
gagagtgtggtcatagcagcagccaggttggacagcaggtcgtttttcttcgacatcgct
ccaggagcagagagcggagtctcggggttcgtcaccctgctggcggccgctcacgctctg
cgtgacatcacccaggaggccccgcccaaccgcaccatcctctacaccttcttccagggg
gaaaccttcgactacatcggcagctcgaggatggtgtatgagatggagaacagtcagttt
gcagtggatctggacaatattcactcagtactggaggttggacaggtgggacttcgtaaa
gactccagactttggcttcacacggatcctgtatccaggaagaacagcagtgtcaacaag
gaggtggaggagctcattgccaacttgcactcggctgctacaaatttaagtgtcttaccg
gacgagcccattgtctctcagcctctgccgccgtcgtccttccagcgtttcctgcgagct
cgctcaatccctggcgttgtgctcgaggatcacaagtctgagttcaccaacatgttctat
gagagcatgtatgataatggagaatacatgaacctgtcttaccctccgaatctgacgcca
caggagcagctggaacatgtcaccgaacgggcgaaggcgctggcggaggtggccaccctg
gtcgctcgggctctgtacaagcaggcaggaggatcacaaaccatgctggacaaaatcaag
gccgaccctcagatagtgacccagatgctgtatggtttccttgttcggaccaataactcc
tggttccagcagctgatcccctcagacttcatgagtcatctgaccaacgggccgcccaac
ttgtacgtcggcgccatccagcagtccagtgaaccaaccgtgctggtgcagtttctgctg
gcgaacctgacgggcagcaccatcaacatcacccgggaaaactgccagaaccagagagag
gatgagaaggacaaggagagcaaacatatatacagctactggtggattcagggtgcggcc
ccacccaacagcacccagcgggagggttactgcgtccgctccagtgcccgtctctccaaa
gccgtgtccccagcgttcgacctgcagcagttcacctccaaagattactccacgtggacc
gagtcccggtggaagcccatcaagggacgcatattcctggtggcaagtcacgaactggag
atgttgacgttgggtgtcggcgtcggcattttggtgacgtccctccttctgacgtacttc
atcagcgcgaaggccgacatactcttcagctcggggagggaacccgccaacgccacctac
tga
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