Hippoglossus stenolepis (Pacific halibut): 118117628
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Entry
118117628 CDS
T08308
Symbol
vcpip1
Name
(RefSeq) deubiquitinating protein VCPIP1
KO
K11861
deubiquitinating protein VCIP135 [EC:
3.4.19.12
]
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
hsp01002
]
118117628 (vcpip1)
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
hsp04121
]
118117628 (vcpip1)
Enzymes [BR:
hsp01000
]
3. Hydrolases
3.4 Acting on peptide bonds (peptidases)
3.4.19 Omega peptidases
3.4.19.12 ubiquitinyl hydrolase 1
118117628 (vcpip1)
Peptidases and inhibitors [BR:
hsp01002
]
Cysteine peptidases
Family C64
118117628 (vcpip1)
Ubiquitin system [BR:
hsp04121
]
Deubiquitinating enzyme (DUB)
Ubiquitin-specific proteases (UBPs)
OTU
118117628 (vcpip1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VCIP135_N
OTU
OTU1_UBXL
ubiquitin
Motif
Other DBs
NCBI-GeneID:
118117628
NCBI-ProteinID:
XP_035025897
LinkDB
All DBs
Position
11:complement(24446328..24454236)
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AA seq
1179 aa
AA seq
DB search
MSLLPSSKKKDKRILSGTCPDPKCQARLFFPAHGSVSIECTECGQRHEQRNLLNVEEVTD
PDVVLHNLLRNALLGVTGAPKKGTELVKVMGLSNYHCKLLSPVLTRYGMDKQTGKAKLLR
DMNQGEMFDCSLLGDRAFLIEPDHVSTMGYGKDRSGSLIYLHDTLEEVKKANSNRECLIP
VHVDGDGHCLVHAVSRALVGRELFWHALRENLKQNFKKNLDRYKALFQDFIDAAEWEDII
NECDPLFIPPEGVPLGLRNIHIFGLANVLHRPIILLDSLSGMRSSGDYSATFLPGLVDEE
QCRGKDGKLNKPICIAWSSSGRNHYIPLVGIKNTVLPKLPARLLPKAWGVPQELIRKYIK
LEQDGSCVIGGDRSLQDKYLMRLVNAMEEVFVEKHSIHPSLVADVHQYVYRRTGVIGIQP
EEVTEAAKKSVMENRLHRCLICGALSELHVPQDWLVPGGKLYNLAKSTHGQLRPDKNYSF
PLNNVVCSYDPQRDVLIADYKLSSLNTCNWCHGTSVRHIRGSGSVVYLDGDRTNTRSQGG
KCGCGFKHYWEGKEYDNLPEAFPITLEWGGRVVRETVYWFQYEADTALNSNVYDVAMKLV
TKHFPGEFGSEILVQKVVNTILHHTAKKNPDEYNPVSIDGAHVQRLTDTSETEQAADTQP
PTKIILTGPKAKTLHKEELTMSRAERSLQQSISEQAFVTQRRRTDKLKQEQRGHGRTSSP
GGSPETSSSSAPATPTKSPSSSNKEKKIRVTTSDGRQAMLTLQAQTTFSELQQSIANQFG
VPPPQQCIRYGFPPKELVPPKDGEENEPMALQHGDRVSVEILKGPEDKSPEDKSPSASIP
RASSSHASLHSVKSEDAVTSGRMSTRELQDSIDLEMSSLCLLATLMGEDVWSYAKKLPHL
FQQGGVFYNIVKKDMGLMDGKHCTLPHLTGKTFVYNAAEERLELCVDTAGHFPVGPDVEE
LVKEALVQLRSETTTRGSREGSPSHGVLRLGSGGVIRKKEQLQSVNAFQGKGHSLGSAGG
SSPPEHRPITRQHSSGMDLSASVSRGPPDLSDIPEDATRELVRMAPGFVTMKDSRGLDPS
LMEQQRRKLQEMVSSIQASMERHLREQQSAAATGGGASHDLTGGTKTGTGQPTSTASHAP
PAAAEVSPAGKADETPEDPEEMDSQDSGQRSATEPMDHS
NT seq
3540 nt
NT seq
+upstream
nt +downstream
nt
atgtcgctgctgccgagctccaagaagaaagacaagcgcattctgtccggtacctgcccg
gaccccaaatgtcaggcgaggctgttcttccccgctcacggctccgttagcatcgagtgc
accgagtgtggacaacgacacgagcagaggaacctgctcaacgtcgaggaggtgacggat
ccggatgtcgtgctccacaatctgctcagaaacgccctgctcggtgtcaccggggccccg
aagaaggggaccgagctggtgaaggtgatggggctctcgaactaccactgcaagctcctg
tctccggtcctcacccggtacggcatggacaaacaaaccggcaaggccaagctgctgagg
gacatgaaccagggtgagatgtttgactgctcgctcctgggagacagggctttcctcatc
gagccggaccatgtgtccaccatgggctacggcaaggaccggtccgggagcctcatttac
ctccatgacaccctggaggaggttaagaaagccaacagcaacagagagtgtctcattccc
gtccatgtagatggagacgggcactgcctggtccacgctgtgtccagagcgctggtaggc
agagaactgttctggcatgcgctgagggagaacctcaaacagaacttcaagaagaacctg
gaccgctacaaagccctgtttcaggactttatcgacgctgccgagtgggaggacattatc
aacgaatgtgaccccctgttcatcccgcctgaaggtgtgccgctcggactgcggaacatc
cacatatttggattagccaacgtcctccaccgacccataatcctgctggactccttgagt
ggaatgaggagttctggggattattcagccaccttcctgcccggcctggtggatgaggag
cagtgtcgggggaaagacgggaagctcaacaaacccatctgcatcgcctggagcagctcc
ggcaggaaccactacatccctctggtgggaatcaagaacacggtgctgcccaagctgccg
gcccgtctgctgccgaaggcctggggcgtccctcaggagctcatcaggaagtacatcaag
ctggagcaagacgggagctgcgtgatcggcggagatcgcagcttgcaggataaatatctg
atgaggctggtcaatgccatggaggaggtgttcgtggagaagcacagcatccacccatcg
ctggtggctgacgtgcaccagtacgtctacagacggaccggcgtgatcggcatccagccc
gaggaggtgactgaggctgctaagaaatcagtgatggagaaccggctgcaccgctgcctg
atctgcggcgccctctccgagctccacgtcccacaggattggctggttcctggtgggaag
ctctacaacttggccaaatctacacacggtcaattgcgaccggacaagaactacagcttc
ccccttaataacgtggtctgctcttatgacccccagcgggacgtcctcatcgcagattac
aaactgagctccctcaacacctgcaactggtgtcatggcacgtcagtccgccacatccgt
ggcagcgggtcagtggtttacttggacggggacagaaccaacacccgctctcaggggggc
aaatgtggatgtgggttcaagcattactgggagggaaaagaatacgacaacctccctgaa
gccttccccatcacgctggagtgggggggtcgggtggtgcgagagactgtgtactggttc
cagtatgaggcagacacagcgttgaacagcaatgtgtatgacgtcgctatgaaactggtc
accaagcactttcctggggagtttggtagcgagatcctggtgcagaaggtggtaaacacc
atcctgcatcacactgccaaaaagaacccggatgagtataacccagtgtccatcgacggg
gctcatgtccagcgtctgacggacaccagtgagactgagcaggcggcggacacccagccg
cccactaaaatcatcctgactggtcccaaagcaaagacgctccataaagaggagctgacg
atgagccgagctgagcgcagcctccagcagagcatcagcgagcaagccttcgtcactcag
aggcgacggactgacaagttgaagcaggagcagagaggccacggccggacgtcttccccc
ggggggtctccagaaacatcctcgtcttcggctccagccacgcccaccaaatccccctcc
tcgtccaataaggagaagaagatccgtgtgaccaccagtgacggcaggcaggccatgctg
accctgcaggctcagaccaccttctcagagctgcaacagagcatcgccaaccagtttggc
gtgccgccgccacagcagtgcatccgctacggcttcccacccaaagagctggtccccccg
aaggacggtgaggagaacgagcccatggcgctgcagcacggtgaccgagtgtcagtggag
atactgaagggccccgaggacaagagccccgaggacaagagcccctccgcttccatccct
cgagcctccagctcacacgcctccctgcactcagtgaagagcgaggacgccgtgacatcc
ggcaggatgagcacccgggaactgcaggacagcattgaccttgagatgtcctccctctgt
ctcctagcaaccttgatgggtgaagatgtttggtcctacgcaaagaagctgccgcaccta
ttccagcaggggggcgtcttctacaacattgtgaagaaagacatgggcctgatggacggg
aagcactgcacgctgcctcacctgacagggaaaacgtttgtttacaacgcagccgaggag
cgtctggagctctgtgtggacactgctggtcacttcccagtcggccctgacgtggaggag
ctggtgaaggaggcgttggtgcagctgcgctcggagacgaccaccaggggcagcagagag
ggcagcccgtcacacggcgtgctgcggctgggcagcggtggcgtcattcgcaagaaggag
cagctgcagagcgtcaacgccttccagggtaaaggtcactccctaggcagtgccggtggc
tcctcccctccagaacaccggcctatcactcgccagcacagcagcggcatggacctgagc
gccagtgtgtccagaggtccaccagacctgtcggacatccctgaggatgccaccagggaa
ctggtccggatggcgccaggcttcgtcaccatgaaggacagtcgcggtctggaccccagc
ctgatggagcagcagaggaggaagctgcaggagatggtctcctccatccaggcttccatg
gagcgccacctgagagagcagcagagcgccgccgccacagggggcggagccagccacgat
ctaacaggcgggactaagacgggcacgggccaaccaacatctacagccagccatgcacct
ccagctgcagcagaggtgtctccagctggcaaagcagatgagacgccagaggatccggag
gagatggacagccaggactccggacagcgcagcgccaccgaacctatggatcactcctga
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