Hippoglossus stenolepis (Pacific halibut): 118117885
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Entry
118117885 CDS
T08308
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03013
Nucleocytoplasmic transport
hsp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
118117885
03015 mRNA surveillance pathway
118117885
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsp03019
]
118117885
Enzymes [BR:
hsp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
118117885
5.6.2.5 RNA 5'-3' helicase
118117885
Messenger RNA biogenesis [BR:
hsp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
118117885
mRNA cycle factors
Common to processing body (P body) and stress granule
118117885
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
NPHP3_N
nSTAND3
Helicase_RecD
DEAD
AAA_16
SRP54
UvrD-helicase
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
118117885
NCBI-ProteinID:
XP_035026413
LinkDB
All DBs
Position
11:10235998..10249948
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AA seq
1115 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEYDFTDFTLPSQTQTQGQTQSQLDGQVNG
PDGVLQNGDDPVVKASQLLAELNFEEDEEDTYYTKDLPVHACSYCGIHDPACVVYCNTSK
KWFCNGRGNTSGSHIVNHLVRAKSKEVTLHKDGPLGETVLECYNCGCRNVFLLGFIPAKA
DSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSWLVKIPSEQEQLRARQITAQQ
INKLEELWKENPTATLEDLEKPGVDEEPQHVLLRYEDAYQYQNIFGPLVKLEADYDKKLK
ESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDEICLRYKGDLAPPWKGIGHVI
KVPDNYGDEIAIELRSSAGAPVEIPHNFQVDFVWKSTSFDRMQSALKTFAVDETSVSGYI
YHKLLGHEVEDVVIKCQLPKRFTAQGLPDLNHSQVYAVKTVLQRPLSLIQGPPGTGKTVT
SATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTGLKVVRLCAKSREAIDSPVSFLAL
HNQTRNMDSMPELQKLQQLKDETGELSSSDEKRYRALRRTAERELLMNADVICCTCVGAG
DPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLILVGDHCQLGPVVMCKKAAKAGLS
QSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYEGSLQNGVTAADRVKKGFDFQWPQ
PDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITTRLLKAGAKPDQIGIITPYEGQRS
YLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFIILSCVRANEHQGIGFLNDPRRLNV
ALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVLVEGPLNNLRESLMQFSKPRKLVN
TINPGGRFMSTAMYDAREALIPGSVYDRSSNGRMSNMYFQTHDQIGMIGTGSNPMTSMNI
PIPFNLVMPPIPPSGYMGQANGPTGGRGGGMKGRAGSGGGGGTRGGRQRNRGNMGNHGGG
NGGTDRGHGGHMSGSQASQDLGSQSFSQGPLTQGYINMSQPSQMSQPGLSQPELSQDSYL
GDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3348 nt
NT seq
+upstream
nt +downstream
nt
atgagtgtggaggcgtacgggccgagctcccagaccctgacgttcctggacacggaggaa
gcggagctgctgggagcggacacccagggctccgagtacgacttcaccgatttcaccctg
ccgagccagacccagacccaaggccagacccagagtcagctcgacggacaggttaacggt
cctgacggggtcctgcagaatggagacgaccctgtggtgaaagccagtcagctgctggca
gagctgaactttgaggaagatgaggaggatacctactacaccaaggaccttcctgttcat
gcctgcagttactgtgggattcatgatccagcctgtgtggtttactgcaacaccagcaag
aagtggttttgtaatggtcgtggaaacacatccggcagccacattgtaaaccacctggtg
agagcaaagtccaaggaggtgaccctgcataaagatggacctctaggggaaacggtactg
gagtgttacaactgtggctgtcgcaacgtcttcctgctgggcttcatccccgccaaggct
gattcagtagtggtgttgctgtgcaggcagccatgtgccagccagagcagcctgaaagac
atcaactgggacagctcacagtggcagcctctcatccaggaccgctgcttcctgtcctgg
ctcgtcaaaatcccctcagagcaggagcagctcagggctcgtcagatcaccgcccagcag
atcaacaagctggaggaactctggaaggaaaatcccacggcgaccctggaggacctggag
aagcccggtgtggacgaggagccgcagcacgtgctgctccgctatgaggatgcttatcaa
taccagaacatctttggccctctagtgaagctggaagctgactacgacaagaaactcaaa
gagtcccagactcaagacaacattacagtcagatgggacttgggactgaataaaaagaga
attgcatatttcactcttcccaagacagactcagatatgcgactgatgcagggagatgaa
atttgcctgaggtacaaaggagatctggctcctccatggaaaggcattggacacgtcatc
aaagtccctgataactatggtgacgagatcgccattgagttaagaagcagtgccggggct
cctgtggagatcccacacaacttccaggtcgactttgtgtggaagtcaacttcctttgac
aggatgcagagtgccctgaagacgtttgctgtggatgagacttcagtgtctggttacatc
taccacaaactgctgggacacgaggtagaagatgtggtcatcaagtgtcagctgcccaaa
cgcttcaccgctcaaggcctgcctgatctcaaccactcccaggtgtatgctgtgaagaca
gtgctgcagcgccccctcagtctgatccagggacctcccggcacagggaagacagtaacc
tctgccaccattgtctaccacctggctagacagggtaacgggccagtgctagtatgtgct
cccagtaacattgctgttgaccagctgacagagaagatccaccagacaggactcaaggtg
gtgaggctgtgtgccaagagcagagaagccattgactcgcctgtctccttcctggctttg
cacaaccagacccgcaacatggacagtatgccagagcttcagaagctgcaacagctgaag
gacgaaactggtgagctgtcatcctcagacgaaaagcgctaccgagctctgagacgtacc
gcggagagggagctgcttatgaatgctgatgtgatttgttgtacctgcgttggggcgggg
gatcctcgtctggctaagatgcagttccgctcaatcctgattgatgagagcacccaggcc
actgaaccagaatgcatggtgcctgtcgtcctgggggccaagcagttgattttggtgggg
gatcactgccagctgggtcctgtggtgatgtgtaagaaggcagctaaagcaggtctgtcc
cagtctctgtttgagcgtctggtagttctggggatccgaccaattcgtctgcaggtccag
taccgcatgcacccagccctcagcgccttcccctcgaacatcttctatgaaggctctctg
cagaacggagtcactgctgcggaccgtgtgaagaaaggctttgactttcagtggccgcag
cctgacaagccgatgttcttttacgtcacacaaggccaagaggagattgccagctctgga
acatcatatctgaacaggacggaggcagccaacgtggagaaaattaccacgaggttgctg
aaggctggagcaaaacctgatcagattggcatcattactccgtatgagggccagaggtcc
tacctggtccaatacatgcagttcagtggctccctccataccaagctctatcaggaggtg
gagatagccagtgtggacgcgtttcaaggcagagagaaagacttcatcatcctgtcctgt
gtgagggccaatgagcaccaaggcattggcttccttaatgatcccagacgtctaaatgtg
gcactcaccagagccaggtatggtgtgatcattgtgggaaaccctaaggccctgtccaag
cagcccctgtggaaccacctgctgaactactacaaggagcagaaggtcctggtggaaggc
cccctcaacaacctgagggagagcctcatgcagttcagcaagccacgaaagctggtcaac
accatcaaccctgggggtcgatttatgagcacagccatgtatgatgccagggaggccctc
attcctggatctgtttatgaccgcagcagcaatggacgcatgtccaacatgtattttcag
acccatgaccagatcggtatgattggcacaggctccaatcccatgacctcaatgaacatc
cctatccccttcaacctggtgatgccccctatacctccctctggatacatggggcaggcc
aatgggcccacgggaggtcgtggtggaggtatgaaggggagggcaggcagtggaggtgga
ggcgggactcgaggtggccgtcaaagaaaccgtggcaacatgggaaaccacggtggaggg
aatggaggaacggaccgtgggcatggaggacatatgagcggcagccaggccagtcaggac
ctgggctcccagtccttctcccagggtcctctgacgcagggctacatcaacatgagccag
ccgtcacagatgagtcagcccgggctctcacagcctgaactctcccaggacagttaccta
ggagacgagttcaagtcccagattgatgtggctctgtcccaggactccacctaccagggg
gagcgggcctaccaacacggtggtgtgactggactgtcccagtactag
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integrated database retrieval system
