Hippoglossus stenolepis (Pacific halibut): 118117896
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Entry
118117896 CDS
T08308
Name
(RefSeq) integrin beta-1 isoform X1
KO
K05719
integrin beta 1
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp03271
Virion - Rotavirus
hsp04145
Phagosome
hsp04510
Focal adhesion
hsp04512
ECM-receptor interaction
hsp04514
Cell adhesion molecules
hsp04530
Tight junction
hsp04810
Regulation of actin cytoskeleton
hsp04820
Cytoskeleton in muscle cells
hsp05100
Bacterial invasion of epithelial cells
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09120 Genetic Information Processing
09125 Information processing in viruses
03271 Virion - Rotavirus
118117896
09130 Environmental Information Processing
09133 Signaling molecules and interaction
04512 ECM-receptor interaction
118117896
04514 Cell adhesion molecules
118117896
09140 Cellular Processes
09141 Transport and catabolism
04145 Phagosome
118117896
09144 Cellular community - eukaryotes
04510 Focal adhesion
118117896
04530 Tight junction
118117896
09142 Cell motility
04820 Cytoskeleton in muscle cells
118117896
04810 Regulation of actin cytoskeleton
118117896
09160 Human Diseases
09171 Infectious disease: bacterial
05100 Bacterial invasion of epithelial cells
118117896
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
hsp04131
]
118117896
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
hsp04147
]
118117896
04515 Cell adhesion molecules [BR:
hsp04515
]
118117896
04090 CD molecules [BR:
hsp04090
]
118117896
Membrane trafficking [BR:
hsp04131
]
Endocytosis
Phagocytosis
Integrins (complement receptors)
118117896
Exosome [BR:
hsp04147
]
Exosomal proteins
Proteins found in most exosomes
118117896
Cell adhesion molecules [BR:
hsp04515
]
Integrins
Integrin beta subunits
118117896
CD molecules [BR:
hsp04090
]
Proteins
118117896
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Integrin_beta
Integrin_B_tail
Integrin_b_cyt
EGF_integrin
PSI_integrin
I-EGF_1
EGF_2
EGF_Teneurin
vWA_SIBA-E
Motif
Other DBs
NCBI-GeneID:
118117896
NCBI-ProteinID:
XP_035026433
LinkDB
All DBs
Position
11:complement(22392034..22410935)
Genome browser
AA seq
802 aa
AA seq
DB search
MDLRLLLIASLSAVLCSSWAQQEGSICIKANAQSCGECIQVAEMCGWCSDVKFLTVGESK
SARCDDLESLKKRKCNVTTIENPRGSFEINTDRPVTDRKNGAANLKPEQITQIQPQKLTL
TLRSGEPQTFDLKFKRAEDYPIDLYYLMDLSFSMKDDLENVKNLGTDLMREMQEITTDFR
IGFGSFVEKTVMPYISTTPARLINPCTGNQNCTSPFSYKNVLKLTNDGDEFNRLVSQQQI
SGNLDSPEGGFDAIMQVAVCEEHIGWRNVTRLLVFSTDAGFHFAGDGKLGGIVLPNDGKC
HLENNMYTMSHYYDYPSIAHLVQKLSDHNIQTIFAVTQDFQPVYKELKNLIPKSAVGTLS
SNSSNVIKLIIDAYNSLSSEVILENGRLPEGVSMTYKSICKNGVEGTGENGRKCFNISIG
DEVSFKISIESQKCPSHGRSEVIKIKPLGFTEEVEVVLNFICDCQCAAAGEPKSEKCHEG
NGTFECGACKCNEGRIGRLCECSKDEVRTEDLDANCRKDNGTDICSNNGDCVCGTCECKK
RENPAEVYSGKYCECDNFNCDRSNNKLCGGHGRCECRKCICDANYTGSACDCSLETSTCL
ARNGQVCNGRGVCECGSCRCTNPKFQGPTCEICPTCPGVCAEHKDCVQCKAFKAGEKKDT
CEQECSYFELMKVKDRDKLPQPTDQSFPLTHCKERDANDCWFYYTYAIRNDTKEVFVVEN
LECPSGPDIIPIVAGVVAGIVLIGLALLLIWKLLMIIHDRREFAKFEKEKMNAKWDTQGN
PIYKSPINQFQNPSYGNKSAAL
NT seq
2409 nt
NT seq
+upstream
nt +downstream
nt
atggatttgcggttactgttaatagcgtctttatcagccgtcctctgcagcagctgggca
cagcaagagggaagcatatgcatcaaagcaaacgcccagtcatgtggggaatgcattcag
gtggccgagatgtgtggatggtgctccgatgtgaaattcctcacagtgggtgaatccaag
tcggcccgctgcgatgacctggagtcgctgaagaagagaaagtgcaacgtgaccacaatc
gagaacccacgcggaagcttcgaaatcaacacggacaggccggtcaccgaccgcaagaac
ggggctgcgaacctgaagcctgagcagatcacccagatccagccacagaaactcacactg
acactcagatctggtgagcctcagacttttgatttgaagttcaagcgggctgaggactac
cccatcgacctgtactaccttatggacctttcattctccatgaaagacgatttggaaaac
gtcaagaacctcggcactgacctgatgagggaaatgcaggagatcacaaccgacttcagg
attggtttcggctcctttgtggagaagacggtcatgccttacatcagcaccacgccagcc
aggctcatcaacccctgcacagggaaccagaactgcaccagccccttcagctataagaac
gtcctgaagctgacgaacgacggagacgagttcaaccggctggtcagtcagcagcagatc
tcaggaaacctggactctccagagggaggcttcgacgccatcatgcaggtggcggtctgt
gaggagcatatcggctggaggaacgtgactcgtctgctggtgttttccaccgacgctggt
ttccacttcgctggagacggcaaactgggcggcatcgtcctccccaatgatgggaagtgt
catctggagaacaacatgtacaccatgagccactactacgactacccctccatcgcacat
ttggtccaaaaactgagtgaccacaacattcagaccatctttgccgtcactcaggatttc
cagcctgtttacaaggagttgaaaaacctgattcctaaatcagccgttggaacgctgtcc
tccaactccagcaacgtgatcaaactcatcattgatgcttacaattctttgtcatctgag
gtcattctggaaaacggccggctgccagagggggtgtccatgacctataagtccatctgt
aagaacggcgtggaggggacgggagagaatggcaggaaatgctttaacatatccatcgga
gatgaggtgtctttcaagatttccattgaatcccagaagtgtccgtcacatggccgttct
gaggtcatcaaaatcaaaccgctgggcttcactgaggaggtggaggtggttctgaacttc
atctgcgactgtcagtgcgccgcggccggagaaccgaaaagtgagaagtgccacgagggt
aacgggaccttcgagtgtggagcctgcaagtgtaatgagggacgtatcgggcgtctttgt
gagtgcagcaaagacgaagtgcggacagaggacctggacgccaactgccgcaaagacaac
ggcaccgatatctgcagcaacaatggcgactgtgtctgcggcacctgcgaatgcaagaag
cgggaaaatccagcggaggtttacagtgggaaatactgcgagtgtgacaacttcaactgt
gatcgctccaacaacaagctctgtggaggacatggacgctgtgaatgcaggaagtgcatc
tgcgacgccaactacacgggcagtgcctgcgactgctccctggagacctccacctgcctg
gcgaggaacgggcaggtctgtaacggccgcggcgtttgtgaatgtggcagctgcagatgc
accaatccaaaattccagggtccgacctgcgagatctgtcccacctgccccggggtctgc
gctgagcacaaagactgcgtgcagtgcaaagcttttaaggccggtgagaagaaggacacg
tgtgagcaggagtgcagctacttcgagctgatgaaggtgaaggaccgcgacaagctgcca
cagcccaccgaccagagtttccctctgactcactgcaaagagcgagatgccaacgactgc
tggttctactacacctacgccatcaggaatgacaccaaggaggtcttcgtggtggagaac
ttggagtgcccatcgggacctgacatcatccccatcgtggccggtgtggtagcgggcatc
gtgctgatcggcctcgccctgctgctcatctggaaactgctcatgatcatccacgaccgc
cgagagttcgccaagtttgagaaggagaagatgaacgccaagtgggacacgcaaggaaac
cccatttacaagagtcctattaaccagttccagaatcccagctatgggaataaatcagct
gctctttag
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