KEGG   Hippoglossus stenolepis (Pacific halibut): 118118052
Entry
118118052         CDS       T08308                                 
Symbol
cop1
Name
(RefSeq) E3 ubiquitin-protein ligase COP1
  KO
K10143  E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27]
Organism
hsp  Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04115  p53 signaling pathway
hsp04120  Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:hsp00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    118118052 (cop1)
 09140 Cellular Processes
  09143 Cell growth and death
   04115 p53 signaling pathway
    118118052 (cop1)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:hsp04121]
    118118052 (cop1)
Enzymes [BR:hsp01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     118118052 (cop1)
Ubiquitin system [BR:hsp04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    118118052 (cop1)
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     118118052 (cop1)
SSDB
Motif
Pfam: WD40 WD40_Prp19 WD40_CDC20-Fz Beta-prop_TEP1_2nd WD40_WDHD1_1st Beta-prop_EML_2 WDR55 Beta-prop_EIPR1 Beta-prop_RIG_2nd zf-C3HC4_2 EIF3I Beta-prop_TEP1_C Beta-prop_WDR19_1st zf-C3HC4 WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 Beta-prop_DCAF4 zf-RING_2 Beta-prop_EML zf-RING_UBOX Beta-prop_WDR90_POC16_2nd zf-C3HC4_4 zf-C3HC4_3 zf-RING_5 RING_XB3-XBAT31 WD40_RFWD3 WD40_like Beta-prop_Vps41 Beta-prop_WDR35_TULP_N Beta-prop_IFT140_1st Beta-prop_DCAF12 Beta-prop_NUP159_NUP214 Beta-prop_IFT122_1st zf-rbx1 zf-RING_10 Beta-prop_SPT8 UvrD-helicase zf_C2H2_10 TilS
Other DBs
NCBI-GeneID: 118118052
NCBI-ProteinID: XP_035026743
LinkDB
Position
11:4662772..4678050
AA seq 711 aa
MSSGRPQQSPGGASSVPSTSSSSTGGSGNTNGGGGSNAVTSNGNNSGNVVPTRTLAAAGE
GVLAVPTLAAVPSSRGGFASLSRPSASSGSRKKTLHQAPLYNGLLNSYEDKSNDFVCPIC
FEMIEEAHMTKCGHSFCFKCIRQSLEDSNRCPKCNYIVDNVDQLYPNFLVNELILKQKQR
SEEKRLKLDHPNGSRWQVFQDVLSPDQENLDLANVNLMLELLVQKKKQLEAESQAAQRQI
LREFLKEARRNKREQLEQLQKELNFLEEDIKRVEEMSGLYSPMMEAECTVPNVEAPSPAP
SCSSIIEPPDYSQPPGFGGTTQGKRQTWYNSTLASRRKRLTAHFEDLEQCYFSNKMSRIT
DEGRNLNQLDDFMECLSKFTRYNSVRPLATLSYASDLYNGSSIVSSIEFDRDCDYFAIAG
VTKKIKVFEYGTVIQDAVDIHYPVNEMTCNSKISCISWSSYHKNLLASSDYEGTVILWDG
FTGQRSKVYQEHEKRCWSVDFNLMDPKLLASGSDDAKVKLWSTNLDNSVASIEAKANVCC
VKFSPTSRYHLAFGCADHCVHYYDLRNTKQPIMVFKGHRKAVSYAKFVNGEEIVSASTDS
QLKLWNVNKTHCLRSFKGHINEKNFVGLASNGDYVACGSENNSLYLYYKGLSKTLLTFKF
DTVKSVLDKDKKEDDTNEFVSAVCWRALPDGESNVLIAANSQGTIKVLELV
NT seq 2136 nt   +upstreamnt  +downstreamnt
atgtcaagcggccggccacagcaaagccctggcggtgcgagctccgtgcccagcaccagc
agcagtagcaccgggggcagcgggaacacaaacggtggcggcggcagcaacgccgtcaca
agtaatggcaacaactctgggaatgttgtgcccacccggaccctggcagcagccggcgag
ggcgtcttggcggtgccaactttggccgccgtgccttcgtcccggggcgggtttgcgtct
ctgagcagaccctctgcgtcctcgggcagcagaaagaaaaccctccaccaagcaccttta
tacaacggcctcctgaattcatacgaagataaaagcaacgattttgtctgtcccatttgc
ttcgaaatgatagaagaggcacacatgacaaagtgtggccacagtttctgtttcaagtgt
atccgccagagcctcgaggatagcaacagatgtcccaagtgtaactatattgtggataat
gtagatcagctttacccaaactttcttgtaaacgaactgatcctcaaacagaagcaaagg
tcagaggaaaagagactaaaattggatcatcctaacgggtctaggtggcaggtcttccag
gatgtgttgagtcctgaccaagagaacttggacttggcaaatgtcaacctgatgctggaa
ctgctggttcagaagaagaagcagctggaggcggaatctcaagcagcacagagacagatc
cttagggagttcctcaaagaagccagaagaaacaagagagagcaactggagcagctacag
aaagagctcaactttcttgaagaagacataaagcgtgttgaggaaatgagcggcctgtac
tctccaatgatggaggcagagtgcacggtgcctaatgtggaggctccctcaccagcaccc
agctgcagtagtattattgagccaccagattacagccagcctccaggatttggtggaaca
acccagggaaaacgacagacctggtataacagcaccctggcgtccagaagaaagaggctg
acggctcactttgaggatctagaacagtgctacttctccaacaaaatgtctcgcatcaca
gatgagggcaggaacctgaaccagctggatgatttcatggagtgtttgtccaagttcacc
cgttacaactctgtgcggccgctggccaccctctcctatgccagtgacctttataatggc
tccagtatagtctccagtattgagtttgaccgtgactgtgactactttgccattgctggt
gtgaccaagaagatcaaggtgtttgagtacggcactgtgatccaggacgcagtggacatc
cactaccctgtcaacgaaatgacctgcaattccaaaatcagctgtatcagctggagcagt
tatcacaagaaccttctggccagcagtgactatgagggaactgtcatcctgtgggatgga
ttcaccggccagaggtccaaagtttatcaggaacatgaaaagaggtgttggagtgttgac
ttcaatctgatggaccccaagctcttagcctctggttctgatgatgctaaagtgaagtta
tggtcaaccaatcttgataactcagtggctagcatcgaggccaaggccaacgtctgctgc
gttaaattcagtccaacctccagatatcatctggcctttggctgtgcagatcactgtgtc
cactactatgatctacgcaacactaagcaaccaatcatggtgttcaaaggtcataggaag
gctgtgtcctacgccaagtttgtcaacggagaggaaattgtttctgcttcaacagacagt
cagctgaagctgtggaacgtcaacaaaacccactgtctgcgctccttcaagggtcacatc
aatgagaagaactttgtaggcctcgcttccaatggagactatgttgcctgcggaagtgag
aacaactccctttacctttactacaaaggactatccaagactttgttaacattcaagttt
gacacggtaaagagtgtcctggacaaggataagaaggaagacgacacaaacgagttcgtc
agtgccgtctgttggagggccctgcctgacggagagtcaaatgtgctgattgctgcaaac
agtcaaggaacaatcaaggtactcgagcttgtctga

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