Hippoglossus stenolepis (Pacific halibut): 118118084
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Entry
118118084 CDS
T08308
Symbol
helz
Name
(RefSeq) probable helicase with zinc finger domain isoform X1
KO
K25168
helicase with zinc finger domain [EC:5.6.2.-]
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
hsp03019
]
118118084 (helz)
Messenger RNA biogenesis [BR:
hsp03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
Other 5'-3' decay factors
118118084 (helz)
3'-5' decay
Other 3'-5' decay factors
118118084 (helz)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_12
AAA_11
zf-CCCH
AAA_19
DDHD
PAM2
UvrD-helicase
zf_CCCH_4
AAA_22
AAA_16
zf-CCCH_4
AAA_5
DUF4746
TPR_1
Motif
Other DBs
NCBI-GeneID:
118118084
NCBI-ProteinID:
XP_035026808
LinkDB
All DBs
Position
2:12473743..12523938
Genome browser
AA seq
2120 aa
AA seq
DB search
MADRRAEKSCEEASRSLVRREYEAAVTHSTDALVVLVPQAPSSGAPVPPSPPSLATSGTL
RSRALLYRIAAFLQLKNYDEADEDCKHVLVEEIARGDGSLQVSLRSMLVDGSLQEVASIL
SKALYGEPMNGIVAKDLTRLKMLLSEIEAINREMAPEYTEDQEEEVQDGWQFRPPPRGVT
SSEEYTLCKRYLEQGLCRYGAQCTSAHSQEELMEWQKRYASRLIRLKQQQESKHFTENYM
ENLIEKWMNSLSPDKVLSDYLDGVNVETSSCLSVTVTTKRSSHSWTFSLFCKPARKLHRI
ALLYDAHRPHFFITGLSAGERLQAFPQGCQEWTPGEQTALAADNGLDNCVYKVGVSFSTE
IFGTFRQTVVFDFGSEPVLMQRIMVDAASIEDLEHLMAARQQLLMTAKRWDPSCKTIVEF
TPNETMADLERSLLVRYQIPLSADQLFTQSVLDKTLTKDNYQARLHDLLYIEEIAQYKEV
SKFNIKVNLQLVNSFMLTGISVGAKYAQNGQLFARFKLTETLSEDTLAGRLVMTKVNSVL
VLPLGRDGVSCQPPPGVKERVYEAVIEEKTKDYIFLRICKDCCEELGLQSDRELQVELQF
QLNRLPLCEMHYALDRIKDNTILFPDIGLVPTIPWSPNSSFPDSSPTTPSLVQWDEQLDP
RLNAKQKEAILAITTPLSISLPPVLIIGPYGTGKTFTLAQAVKHILRQDHSRVLICTHSN
SAADLYIKDYLHPYVEAGNPHARPLRVYFRNRWVKTVNPVVQQYCLVSHTGVNFQMPTRE
DILRHRVVVVTLSTSQYLCQLDLEPGFFSHVLLDEAAQAMECETIMPFALASKTTRIVLA
GDHMQLSPFVYSEFARERNLHVSLLDRLYEHYPREFPCRILLCENYRSHEAIINYTSELF
YDGKLMASGKQPSHKDFYPLTFFTARGEDVQEKNSTAYYNNAEVFEIVERVEELRKKWPV
SWGKLDDGSIGVVSPYADQVFRIRAELRKKRMHEVSVERVLNVQGKQFRVLFLSTVRTRH
TCKHKQTAIKRKEQLIEDSTEDLDYGFLSNYKLLNTAITRAQSLVAVVGDPIALCSVGRC
RKFWEHFISICHENSSLHGITFEQIKAQLEALELKKTYVLNPLAPEFIPRALRSMQGHHS
SQALHAHHHPHPQHAQPASIKQGQQQQQQQQQQSPPKGKHANHTEHLPPEGYVQPNPAVL
MGNPIRAFSPPLGGTPAAMGKSPSPVQRIDPHTGASILYVPAVYGGNMVMSMPLPLPWPG
YQNRFAVDPRIMNHPAAMAYNFNLLQAQNRGSPIPYSGVTHPSPLGMGQPSPDKELQADP
IRNGKLEACTKSEQSRLLTPERKSTDMKEKQGDLDTGQSRSLDSQTDGLVGFPNALLHRK
DPSAAQRPLNYHLAPPNPAFPPHPTSGRPFPPQYPVSRLPFRVSQPQHPGMAQQSQQQQQ
QLSPAYTGGSHNASFFSGPIPPHRAVQSPTMDGPESGGVEEMGSSIRTPMGHPGGHHPGL
SQHNRVNSFGEDGQEGTLGDGLDLQGPLALEALSQQQQAARLGQWGETAGPFLQGSVAFP
LPQQLAHLAQPGMPARIPHQLLRAASWGLSANMEDEAVSSASAGPPYTRYPGLLREMPPQ
EQPEPREAVEMQPPPQSRLLQYRQSQSRASGDPTSSLAASSNHAGPFPSGPYSHDTGRDL
LNENLLNNPALQQQHPGNPLYNTGSYPHQPPAHSVSPPPSQVKYLLQEAQWSHGGAASVS
PPHNHLLGNQGHGHGLPYGLPIMAHPSRQEQVHLMQLHHQHQQQQQQQQQQQQQQQQQQQ
QQQQQQQQQQQQQQQQQQQQQQQQQQQQQQSQGPDQESYHPLSPRTSAATALHNVDESVQ
YEPRGPGRPLYQRRISSSYPDEPSPANPHNALSQQPQPCTSDPQEHPHPHLQHHQHPHAH
YVYPPHDNWPSNGGGPAPFQNIPCNGAGTLAQHREILASKALRQTEEQVKAETTAAQQTH
PHSLNSLQHLGQFPPLMPNNKQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ
QQQQQPQQQQQPQAPTEPSQGAPNLNKPPTMSYASALRAPPKPRAVRPEQVKKNSDPLSL
LQELSIGSSNGSNGYYSYFK
NT seq
6363 nt
NT seq
+upstream
nt +downstream
nt
atggcggacaggagagcggagaagtcatgtgaagaagccagcagatcgttagtcaggcgg
gagtacgaggcggcggtcacccacagcacggacgccctggtggtccttgtaccccaagcc
ccatcctctggtgcccccgtcccgccgagccctccatcccttgccaccagcggaaccctc
cgcagccgcgccctgctctatcgaattgctgccttcttgcagctgaaaaactatgatgaa
gcagatgaagactgcaaacatgtcctggtagaagagattgccaggggagatggttcgcta
caagtcagcttgcgctccatgctggtggacggaagcctgcaggaggtggccagcatcctc
tctaaagccttgtatggagagccaatgaacggcattgttgcaaaagacctgaccaggtta
aaaatgctcctttcagaaatagaggctataaatagggagatggcaccagaatacacagaa
gaccaggaggaggaggttcaagatggctggcagttccggcctcctccccgaggagtcacc
agcagtgaggagtacaccctctgtaaaaggtacttggagcagggtctgtgtcggtatggg
gcccagtgtacgtcagcccactcgcaggaggagctgatggagtggcagaaacgctatgcg
tcacgcctcatccgcctcaaacagcagcaggagagcaaacacttcaccgaaaactacatg
gagaacctgatagagaagtggatgaactctctctccccagataaagtgttaagtgactat
ttagatggagtgaatgtagaaaccagctcctgcctctctgttactgtcacaaccaaaaga
tcctcccactcctggacattctccttgttttgcaagccggcaagaaagctccaccgcatc
gccctgctctacgatgcccaccgaccacatttcttcatcacaggcttgtcagctggggag
cggcttcaagcattcccccaaggctgccaggagtggactccaggagagcagacagcattg
gcagcagacaatggcctggacaactgtgtctacaaggtaggagtgagcttcagcacagag
atctttggtaccttcagacagacggtcgtttttgactttggctcagaacctgtgctgatg
cagcggatcatggtggatgctgcctctattgaagacctagaacatttgatggcagccagg
cagcagcttttgatgactgcaaagcgctgggacccctcctgtaagaccattgtagaattc
acccctaatgagacgatggctgacctggagcgcagcctccttgtccgctatcagatccct
ctgtcggccgaccagctcttcacccagtcggtcctggacaagactctgaccaaagacaac
taccaggcccggcttcatgacctgctgtacattgaggagattgcacagtacaaggaagtt
agcaagtttaacatcaaagtgaacctccagctggttaacagctttatgctgaccggcatt
tcggttggagccaagtacgcccagaacggacagctctttgcacgcttcaaactcacggaa
acactttccgaggacacactggctggtcggctagtgatgaccaaggtaaactcagtcctc
gtgctccccttgggccgtgatggggtcagctgccagccgcctccaggggtcaaagagcga
gtttacgaggctgtgattgaggagaagaccaaggactacatcttcctacggatctgcaaa
gactgctgtgaggagttggggctacaatcggaccgagaactacaggtggagctccagttc
cagctgaacagactgccgctctgtgagatgcactatgccctcgatcgcatcaaagataac
accatccttttccctgacattggacttgtccccaccatcccctggagtccaaacagttcg
ttcccagacagctcacccaccacaccttctcttgtgcagtgggatgagcagctggacccc
cgtctgaatgccaaacagaaagaggccatactggcaatcaccacacccctctccatctct
ctacccccagtcctcatcattgggccgtacggcaccggcaagacgttcaccctggcacag
gctgtcaaacacatcctccgccaggaccacagcagggtcttgatctgcacccactccaac
agcgcggctgacctttacattaaggactatcttcatccttacgttgaagcaggcaatcca
catgccagacctctcagggtatacttcaggaaccgctgggtgaagacggtcaacccagtg
gtccagcagtactgtctcgtctcccacacaggggtcaatttccagatgcccacaagggag
gacatcctcaggcaccgtgtggtggtggtcaccctcagcacctcccagtacctctgccag
cttgacttggagcctgggtttttcagtcatgtcctactggatgaagcggcccaggccatg
gagtgtgaaaccatcatgccttttgctctagctagcaagaccacccgcatcgtgctggct
ggggaccatatgcagctcagtccattcgtgtacagcgagtttgcacgggagcgtaacttg
cacgtgtcactgctggaccggctgtatgagcactacccccgggaatttccctgccgcatc
ctcctgtgcgagaactaccgctcccacgaagctatcatcaactacacgtcagagttattc
tatgacgggaagttaatggcaagtggaaagcagccctcccataaggacttctaccctctg
acattcttcacagccagaggagaagatgtccaggagaagaacagcactgcctactacaac
aacgctgaggtgtttgagatcgtggagcgagtagaggagctgcgcaagaagtggccggtg
tcctgggggaagctggacgacggcagcattggagtggtgtcgccgtacgctgaccaggtg
ttccgcattcgtgctgagctccgaaagaagagaatgcacgaggtcagcgtggaaagagtg
ctcaatgtccaaggcaaacagttccgggtgctgttcctcagcactgtgcggacgcggcac
acctgcaagcacaaacagacggccatcaagcgtaaagaacagttgatcgaggactcaacc
gaggacctggactatggctttctctccaattacaagctgctcaacacggccatcaccaga
gcccagtccctggttgcagttgtgggagaccccatagcactgtgctctgttgggcgctgc
agaaaattctgggagcatttcatctccatctgccacgaaaactcgagcctacacggcatt
acctttgagcagatcaaggctcaactcgaggccctggagctcaagaagacttatgtcctc
aacccactggccccggagttcatcccacgtgccctcagatccatgcagggacaccactct
tcgcaggccttacacgcccaccatcatccgcatcctcagcatgcacagcccgcctccatc
aagcagggtcagcagcagcagcaacagcagcagcagcagtcaccacccaaggggaaacat
gcaaaccacacagagcacctgccacctgaaggatatgttcaacccaacccagccgtactg
atgggaaacccgattcgggcattctcaccacctctaggtggtacaccagctgccatgggc
aagtcgcccagtcctgtgcagaggatagatccacatacaggcgccagtatcctctatgtt
ccagccgtgtatggtggcaacatggtcatgtccatgcccctgcctttgccttggccaggt
taccagaatcgctttgctgtggaccctcgcatcatgaaccaccctgcagccatggcctac
aacttcaacctgttgcaggcccagaatcgaggctcccccatcccttacagtggagtgacc
cacccctctcctctaggcatgggtcagcccagccctgacaaggagctacaggcagacccc
ataagaaatggtaaattagaagcatgtacaaagtcagaacagagccgtctcctgacacca
gagaggaaatccactgacatgaaggaaaaacagggagatttagacacaggccaaagtcga
agtctagactctcagacagatgggttagttggatttcccaatgctctactccatcgaaaa
gacccctcggctgcccagagacccctcaactaccacctggcaccacccaacccagccttt
cctccacatcctaccagtgggagacccttccccccacagtatccagtctccaggcttcca
ttccgggtcagtcagcctcagcacccagggatggcccagcagagtcaacagcagcagcaa
cagctcagtcctgcctacactggtggtagccacaatgcttccttcttcagtggccccata
ccgcctcacagggctgtccagtctccaactatggatggcccagagtctggaggagtggag
gagatgggtagctccattaggactccaatgggccacccaggaggccaccacccaggcctg
tcgcagcataacagggtcaatagctttggggaggatggacaagaagggaccttgggagat
ggtctggacctccagggtcccttggctcttgaggccctgagccagcagcagcaggcagcc
aggctgggccagtggggggagacagcgggccctttcctgcagggcagcgttgcctttcct
ttgccgcaacagctcgcccaccttgctcagcccggcatgccggctcgcatcccccatcaa
ctgctccgggcagctagttggggccttagtgccaatatggaggatgaagctgtttcttct
gcctctgctggaccaccttacaccaggtacccaggcctcttgagagagatgcccccacaa
gaacagcctgaacccagggaagcagttgagatgcagcccccacctcagtctcgtctcctc
cagtatcggcagtcccagtcccgtgcctcaggtgaccctacatcctccttagccgcctcc
tccaatcatgctggccctttcccatcaggaccttactcccatgacaccggtcgtgacctc
cttaacgaaaaccttctcaacaacccagctctgcagcagcagcaccctgggaaccccctg
tacaatactggtagctacccacatcagccaccagctcactctgtcagccccccgccctcc
caagtcaaataccttctgcaagaagctcagtggtcccatggtggagccgcatcggtgagc
ccaccacataaccacctgttagggaaccagggccacggccatggccttccttatggactt
cccatcatggctcaccccagcagacaggagcaagtccacctgatgcaacttcaccatcag
caccagcagcagcagcagcagcaacagcagcagcaacaacaacagcaacaacagcagcag
caacaacaacagcagcagcagcagcaacaacagcagcagcagcaacaacaacaacagcag
cagcagcagcagcagcaacaacaacaacaaagtcaaggcccagaccaggagtcctaccac
cctctgtcccccagaacgtcagcagccacagcccttcacaatgtagatgagtccgtacag
tatgaacccaggggtccaggtcggcctctctatcagcgccgcatctcctccagctaccca
gatgaaccatctccagccaacccccacaatgccctgtctcagcagccccagccttgtaca
tcagatccccaggagcacccccatccgcacctacagcatcaccaacacccacatgcccac
tacgtttatcctccgcatgacaactggcccagtaatggcggcggtcccgctccgttccag
aacattccatgtaacggagccggcacgcttgctcagcatcgggaaatccttgcttccaag
gcccttcgtcagacggaggagcaggtgaaggctgagaccacagcagcacagcagacgcac
ccacactccctcaactcccttcagcaccttggacagtttcctcctctcatgcccaacaac
aagcagcagcagcaacaacaacagcagcagcagcaacaacaacagcagcagcagcagcag
cagcaacaacagcagcagcagcaacaacaacaacaacagcagcagcagcagcagcagcaa
caacagcagcagcagccgcagcagcagcagcagccacaagctcccacagagcccagccag
ggcgccccaaatctaaacaaaccacccaccatgtcctacgccagcgccctgcgcgctcca
cccaagccccgagctgttcgccctgaacaggtcaaaaagaacagcgaccccctctccctc
cttcaagagctgagtataggaagttcaaatggtagcaatgggtactattcctactttaaa
tga
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