Hippoglossus stenolepis (Pacific halibut): 118118380
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Entry
118118380 CDS
T08308
Symbol
ptch2
Name
(RefSeq) protein patched homolog 1
KO
K11101
patched 2
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Pathway
hsp04340
Hedgehog signaling pathway
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09130 Environmental Information Processing
09132 Signal transduction
04340 Hedgehog signaling pathway
118118380 (ptch2)
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Motif
Pfam:
Sterol-sensing
TRA2_N
Patched
Motif
Other DBs
NCBI-GeneID:
118118380
NCBI-ProteinID:
XP_035027455
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All DBs
Position
11:complement(13348465..13377372)
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AA seq
1490 aa
AA seq
DB search
MASDHGVPGAGVFGDLPPSYARSQPPANPELLRRPSYCHAAFALKQISKGKAVGQKAPLW
IRARFQALLFSLGCHIQRHCGKVLFIGLLVFGALSVGLRVAAIETDIEQLWVEAGSRVST
ELRYTKEKQGEESVFTSQMLIQTPKEEGTSILTQEALLVHMEAALSASKVQVSLFGKSWD
LNKICYKSGIPIIENVMIERMIDKLFPCMIITPLDCFWEGAKLQGGAAYLPGMPDIQWMN
LDPVKLMEELSQFTSLEGFKEMLDKAQVGHAYMNRSCLDPSDPDCPLSAPNKDRGESPDI
AKRLQGGCHGFSRKFMHWQEELILGGLVKSSQDTLLSAEALQTMFLLMSPKQLYEHFKDS
HEIHELNWNEDKATAILESWQRKFVEVVHQSIPTNSSQSIHAFSTTTLNDIMKSFSDVSV
IRVAGGYLLMLAYACVTMLRWDCAKSQGAVGLAGVLLVALSVAAGLGLCSLLGLSFNAAT
TQVLPFLALGIGVDDMFLLAHSFTETGTSIPFKDRTGDCLRRTGTSVALTSINNMIAFFM
AALVPIPALRAFSLQAAIVVVFNFAMVLLIFPAILSLDLHRREDKRLDVLCCLYSPCSNR
VIHLSPHELSDTGEQPHTPTAATTHTHQYTAGSTITTSTQITTTVQAFTQCDAAGQHIVT
ILPPTSQISTSPPSIILCPTSQASGITPSPTTTSVPDPYGSQLFNPTSSSTRDLLAQVKD
SKSGKKCVPLPFLHWNLSSFARDKYAPLLLNPKSKAIVVVLFLGLLGLSLYGTTMVHDGL
YLTDIVPRDTKEYDFIDAQFKYFSFYNMYLVTMDGFDYARSQRLLIQLHNAFNSVRCVVR
DSDSKLPRMWLHYFQDWLRGLQMSFDADWQAGRITADSYRNGTEDGALAYKLLIQTGSKK
EPFNYSQLVSRRLVDAEGLIPPEVFYIYLTVWVSNDPLGYAASQANFYPHPREWVHDKYD
TTGENLRIPAAEPLEFAQFPFYLNGLRQASDFVEAIESVRAICDEFSRKGVFNYPNGYPF
LFWEQYIGLRHWFLLAISVVLACTFLVCAILLLNPWTAGIIVFILAMMTVELFGIMGLIG
IKLSAIPVVILIASVGIGVEFTVHIALGFLTAIGNRNKRSEVALEHMFAPVVDGAISTLL
GVLMLAGSEFDFIMRYFFAVLVILTVLGMLNGLVLLPVLLSMMGPPPEITPVDNASRLPT
PSHEPPLPPPMTHHGYYTGHHNPRSPRQQAFSESSDSEYYSEMTTTSGIGEEDYKYCDRS
AYIESHVNVPPPTSHILLEASKNPSFPKLTVVKPFKENATGAGGRIEPLNESSYNAQSPL
SSQVTCWDGNKREQQPGLQRPQAQPGQHLPSDRAYFPGRTCQSGPRPHNGRGPQPNRTKG
PSYNNSTSILPSQQGLTGGPITMVTATASVTVAVHPNLPGAAYQGYMHEGFDTESESDCF
EAAKRTCGDKTNFSSYKRNSIEIQDLEETQTQHQLCKTQGGLRIQAAKDC
NT seq
4473 nt
NT seq
+upstream
nt +downstream
nt
atggcctcggatcacggggtcccgggggccggcgtctttggagatttacccccgagttat
gcgcgctctcagccgcccgcgaacccagaactgctccggagacccagctactgccacgct
gctttcgcacttaaacagatctccaagggtaaggcggtaggtcagaaagctcctctgtgg
atccgggcgaggttccaggccctcctgttctctctgggctgccacatccagaggcactgt
gggaaggtcctctttattggactcttagtatttggggctctgtctgtggggctccgagtc
gcagccatcgagacggacatcgagcagctatgggtggaagctggcagtcgggtgagcaca
gagcttcgctacaccaaggagaagcagggagaggagtcagtgtttacctcacagatgctc
atccagacccccaaagaagagggcaccagtattcttacccaggaggccttgctggtccac
atggaggctgctctgtctgctagcaaggtccaggtgtcgctgtttggaaaatcgtgggat
cttaacaaaatatgctataaatcaggaattcctattattgaaaatgtcatgattgaaagg
atgattgacaagctatttccctgtatgataatcaccccattggactgtttttgggaaggg
gccaaactacagggaggcgccgcctatttaccgggtatgccggacatccagtggatgaat
cttgatccagtcaagctgatggaggagctcagtcagttcacttcactggaaggatttaag
gagatgttggacaaagcccaggtgggtcatgcctacatgaacaggtcttgtctggatccc
tcagaccccgactgccctcttagtgcccccaacaaagacagaggagagagtcctgacatt
gccaagcgtctccagggtggttgccacggtttcagccggaagttcatgcactggcaggag
gagctgatcctcggagggctggtcaaaagcagccaggacactttgctgagtgcggaggct
ctccagaccatgttcctgttgatgagtccgaagcagctgtacgagcactttaaagacagc
cacgagatccacgaactcaactggaacgaagataaggccaccgccatcctcgagtcctgg
cagaggaagtttgtggaggtcgtccatcagagcatcccaactaactccagccagtcaatc
cacgctttctccaccaccaccctcaacgacatcatgaaatccttctctgatgtcagcgtc
atcagggtggctggaggatacttgctcatgctcgcctatgcctgcgtgaccatgctaagg
tgggactgtgctaagtcccagggggccgtggggctggccggtgtgctgctggtggccctg
tcagtggccgcggggctgggtctgtgctccctgcttggcctctccttcaacgccgccacc
acacaggtgcttcccttcctggcactagggatcggtgtggatgacatgtttctgttggct
cactccttcacagaaactggaactagcatcccattcaaggaccggacaggcgactgttta
cgtcgcaccggcaccagcgtcgctctgacttccataaacaacatgattgcattcttcatg
gctgccctcgtacccatccctgccttgcgagctttctccttgcaggcggccatcgtggtt
gtgtttaacttcgccatggtgctgctcatcttccccgccatcctgagcttggacctccac
agacgcgaggacaagcgtttggacgtcctctgctgcttgtacagcccctgctccaaccga
gtcatccacctctccccgcacgagctgtcggacaccggggagcagccgcacacgcccacg
gctgcaacgacgcacacgcaccagtacactgctgggtccacgatcacgaccagcacccag
atcaccaccacagtgcaggcgttcactcagtgtgacgcagcaggacagcacattgttaca
attctaccgcctacctcacagatctccaccagcccaccttccatcatcctctgccccacc
tcccaggcttcaggcatcacaccttcccccaccaccacctcagtgcctgacccctacggc
tcccagctattcaaccctacctccagctccacccgggacctcctcgcccaggtgaaagac
tccaaatcgggaaaaaagtgcgtcccactccctttcctacactggaacctgtccagcttt
gccagggataaatacgcccctctgctcctcaatccgaaaagcaaagccattgtggtggtc
ctcttcctgggcctcctgggcctaagcttgtatgggacaaccatggtgcacgacggcctc
tacctgaccgacattgtgccacgcgacaccaaggagtatgatttcattgacgcccagttc
aagtacttctccttctacaacatgtaccttgtcaccatggatggatttgactacgctcgg
tcgcagcggttgctgatccagctgcacaacgcttttaactccgttagatgcgtggtcaga
gacagcgacagcaaactgcctcgcatgtggctgcactacttccaggactggctcagaggt
ctacagatgtcttttgatgctgactggcaggcaggcaggattacagctgacagctatcgc
aatggcacggaggacggagctctggcgtacaaactcctcatccagaccggctccaagaag
gagccttttaactacagccagctggtgtctcgtcggctggtagacgctgagggtctgatc
cccccagaggtgttttacatttacctgaccgtttgggtcagtaacgatcctctgggctac
gctgcctcccaggccaacttctacccccatcccagagagtgggttcacgacaagtacgac
actacaggggagaatctgcgcatcccagctgcagagcccctcgagtttgcccagttcccc
ttctacctgaacggccttcgccaggctagcgactttgtggaggccatagagagtgtgcgg
gccatctgtgacgagttcagccgcaagggagtgttcaactaccctaacggataccccttc
ttgttctgggagcagtacattggcctcagacactggttcctgctagcgatcagtgtggtt
ctagcctgcaccttcctggtctgtgcgatcctcctgctcaacccctggaccgccggcatc
attgtgtttatcttggccatgatgacggtggagctgttcggcatcatgggtctgattggc
atcaagctcagcgccatccccgtggtcatcctgatcgcctctgtgggcatcggagtggag
ttcactgttcacattgcactgggcttcctgacagcgattggcaacagaaacaaacgctcg
gaggtggctctggagcacatgtttgccccggtggtcgacggagccatctccacactgctc
ggcgttctcatgctggcagggtccgagtttgacttcatcatgaggtacttctttgccgtg
ttggtcatcctgacagtgttgggcatgctgaacggcctagttctcctgccggtcctcctt
tccatgatggggccgccacctgaaatcactccagtcgacaacgccagccggttgcccaca
ccctcccacgagcccccactcccgccacccatgacacaccacggatactacacgggccac
cacaacccgcggtcgccccgtcagcaagcgttttctgagtcatcggactccgagtattac
tctgagatgaccaccacgtcagggatcggggaggaggattataagtactgtgaccggagc
gcatacatagaatcgcatgtcaacgttccacctcctacgtctcacatactgctggaagcc
agcaagaaccccagcttccccaagcttacggtggtgaagccgttcaaagaaaatgcaaca
ggcgccggtgggaggatagaaccattaaatgaatcttcgtacaatgcacagtcacctctc
agctcccaggtcacgtgctgggacggaaacaagcgggagcagcagccgggcctccagagg
ccccaggctcagcccggccaacatttacccagcgacagagcttacttccctgggaggact
tgtcaaagtgggcccaggcctcataacggcagagggcctcagccaaacaggactaaaggg
ccaagctataacaatagcacctccatcctgccgtcgcaacaaggcttgactgggggtccc
attactatggttacagccacagcctctgtgacggtggccgtgcatccgaacttgccgggg
gcggcgtatcaaggctacatgcatgaaggttttgacactgaaagcgagtcagactgtttc
gaggctgctaagaggacttgtggtgacaaaacaaacttttcttcatataagagaaactct
atagagatccaggacttggaagaaacacagacacagcatcagctctgcaagacacaaggt
gggttgaggatccaggcagccaaagattgctag
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