Hippoglossus stenolepis (Pacific halibut): 118118712
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Entry
118118712 CDS
T08308
Symbol
btaf1
Name
(RefSeq) TATA-binding protein-associated factor 172 isoform X1
KO
K15192
TATA-binding protein-associated factor [EC:5.6.2.-]
Organism
hsp
Hippoglossus stenolepis (Pacific halibut)
Brite
KEGG Orthology (KO) [BR:
hsp00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
hsp03021
]
118118712 (btaf1)
Transcription machinery [BR:
hsp03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Others
118118712 (btaf1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF3535
SNF2-rel_dom
HEAT
Helicase_C
HEAT_EF3_N
HEAT_2
Vac14_Fab1_bd
TPR_Trm732_C
HEAT_EZ
ARM_ECM29
Motif
Other DBs
NCBI-GeneID:
118118712
NCBI-ProteinID:
XP_035027846
LinkDB
All DBs
Position
12:5899714..5924481
Genome browser
AA seq
1853 aa
AA seq
DB search
MAVSRLDRLFILLDTGTTPVTRKAAAQQLGEVVKLHPHELNTLLSKVLTYLRSPNWDTRI
AAGQAVEAIVKNIPEWDPAPKPKEESCEDLSPEDTSCDRLSFYHFDISRLLKHGASLLGS
AGAEFELQDDKAGEMDPKERLARQRKLLQKKLGLDIGAAIGMDTEELFNDEDLDDTCQQS
GLRAHGSKATAGSSSRNNLPPATAAELIDSEFRPGMSSRQKNKAKRMAKLVAKQRSRDMD
PNEKSNDSFEGEPEEKRRKTTNVVIDQPATEHKVLIDNVPDNSSLLDEWPLESFCEELCN
DVFNPSWEIRHGAGTGLREILKSQGAGGGKLVGSTVEQMLRQHQEWIEDLVIRLLCVFAL
DRFGDFVSDEVVAPVRETCAQTLGVALRNMNETGVSMTVDVLLKLLKEDQWEVRHGGLLG
IKYALAVRQDLISVLLPRVLPAITVGLQDLDDDVRAVAAAALIPVVEGLVQLLPNKVPNI
VNTLWDALLDLDDLTASTNSIMTLLSSLLTYPQVWQCSMQQSLTVLVPRVWPFLRHTISS
VRRAALETLFTLLSKADQSCAIWINPILQDMLRHIFQSCILESNEEILELIQKVWMELLS
QAPQQYVVAASCPWMGAWLCLMMQASPIPIDPNMLLEVKARSKLDKAGSKARQGTIQVKE
TVQEYIAGAETVTDDPVTRDYVVIRARLMAAKLLGALCRCICDPQLNAASQEIRPAESLG
QLLLFHLNSKSALQRIAVALVLCEWSTLQKDCQVVSTMVQPRLLAILSEQLYYDEIAIPF
TRMQNECKQLIALFADSNIDLEDRLNCSVFTIDQANELVTTIFTESTAGLNVQSKQWQAL
DGKRQQAQATVMETSTEWQQLHLRVHMFTACAVINLQVLPDKLNPLVRPLMEAIKREENT
LIQGYTASFIAKLLQQCAGRSPCPNPKIIKNLCASACVDSAVTPSSACPVPPTQENAKVS
GLEKDCMHHMVNKTRGIITLYRHQRAAFAITSKRGPAPKAPKAPSTELPPGSTISTDNDE
SRKPFLIQRRGAEFSLTTVAKHFSADLTKSLPYLWDNTVGPLRTVVTENQCIDRQVQLER
GDAAAQELVNSLQVLEVIAGAMASELKPLLLQHLPDLFTCLQHPYTAVRHMAARCVGVFS
KLAMLETMNSFLECVLPWLAAIDDCTKQEGAIEALACVMEQLDVDIVPYIVLLVVPVLGR
MSDPSDSIRFMATQCFATLIRLLPLEAGIPDPPAMSADLIRQKARERHFLEQLLDGRKLE
NYKIPVPIKAELRKYQQDGVNWLSFLNKYKLHGILCDDMGLGKTLQSICILAGDHYLRAQ
EYAKTTAADCSPMPSLVVCPPTLTGHWVDEVGKFCSKEYLNPLHYTGPPTERMRLQHQVK
KHNLVIASYDVVRNDIDFFRNIKFNYCILDEGHVIKNGKTKLSKAIKQLAANFRIILSGT
PIQNNVLELWSLFDFLMPGFLGTERQFAARYGKPILASRDAKSSSREQEAGVLAMEALHR
QVLPFLLRRMKVDVLQDLPPKIIQDYYCNLSPLQVQLYEDFAKSRAKASVEDTISVASTE
EEEKPKLKATGHVFQALQYLRKLCNHPSLVLTPQHPEYKRISEQLADQNSSLRDITHAPK
LSALKQLLLDCGLGCGGGTEGGTESVVAQHRVLIFCQLKSMLDIVEQDLLKPKLPSITYL
RLDGSVQAGLRHSIVSRFNNDPSIDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQ
AMDRAHRIGQKRVVNVYRLITRGTLEEKIMGLQKFKISIANTIISQENSSLQSMGTDQLL
NLFTLDKDEKGEQVPSTSGKTSMKSVLDGLGELWDQQQYDTEYNLDSFMHSLQ
NT seq
5562 nt
NT seq
+upstream
nt +downstream
nt
atggcggtatcaagacttgatcgtttgtttatcctgcttgacactggaacaacaccagta
accaggaaagcagcagcccagcagcttggagaagtggtcaaactccacccacatgaactc
aataccctcttatcaaaggtcttgacctacctaaggagtcccaactgggatactcgaata
gcagcaggccaagctgttgaggccattgtgaagaatattcctgagtgggacccggccccc
aaacctaaagaagagtcttgtgaagacttatctccagaggacacctcttgtgaccggttg
agtttctaccacttcgacatctcccgcctcctcaaacatggagcctctctgctgggatct
gccggggctgagtttgagctccaagatgacaaagcaggagagatggaccctaaagaacga
ctcgctcgccagaggaagcttcttcagaagaagttgggtctagacattggtgctgctatt
ggaatggacacagaggagctgttcaatgatgaggaccttgacgatacctgtcaacaaagt
ggactcagagcccatggaagcaaagctacagctggatccagctcccgcaacaatctacca
cccgctactgctgctgagttgatcgactcggagttccgaccaggcatgagcagtcgtcag
aagaataaggcgaagaggatggctaaactagtggctaaacaacgatccagagacatggat
ccaaatgaaaagagtaatgacagttttgaaggtgaacctgaagagaaaagaaggaaaacc
acaaatgtagttattgatcaaccagcaacggagcataaagtcttaatcgacaatgttcca
gataactccagccttttagacgagtggcctctggagagcttctgtgaggaactctgcaat
gacgtcttcaatccttcatgggagattcgtcatggcgcaggtacaggtcttcgagaaatc
ctaaaatcccagggtgcaggaggtgggaagttggtgggaagcactgttgaacagatgttg
cggcagcatcaggagtggatagaggacctggtgatccggctgctctgtgtcttcgctcta
gaccggtttggggattttgtatctgatgaggtggtggctcctgtcagggagacgtgtgcc
cagacgcttggcgtggcccttcgcaacatgaatgaaactggcgtttccatgacagtggat
gtcctgctaaagcttctcaaagaagaccaatgggaggtccgtcatggaggcctgctggga
atcaagtatgccttggctgtccgacaggacttgatttctgtgttactgccccgggtgctc
cctgccatcactgtaggccttcaggacctagatgatgatgtcagagctgtggctgctgca
gccctcatccctgtggtggaaggcttggtacaactactgcccaataaggtccccaatata
gtgaacacactctgggatgctcttttagacctggacgacctcactgcttccaccaacagc
atcatgacgttgctctcctcattactcacgtatccacaggtctggcagtgcagcatgcag
cagtcgttaacagtcctggttcctcgggtttggccgtttttgagacacactatatcatca
gtaagacgtgcagcactggaaactcttttcactctgctgtctaaagctgaccagagctgt
gccatttggatcaacccgatcctacaagacatgctccggcacatcttccagtcgtgtata
ctggaaagcaacgaggaaatccttgaactgatccaaaaggtgtggatggagctgctctct
caggcccctcagcagtacgtggttgcagccagctgtccatggatgggagcctggctctgc
ctcatgatgcaggcctcacccattcccatagacccgaacatgctgctggaagtgaaagct
cgctccaagctggataaggctggttcaaaggcacgtcaggggaccattcaggtgaaggag
acagtccaggaatatatagcaggcgcagagacggtgacagatgacccagtgacgagggac
tatgtggtgattcgagctcgtctcatggctgccaaattgctgggggctttgtgtaggtgt
atctgtgaccctcagctcaacgcggcatctcaggagatccgaccagctgagtctttaggc
cagctgttgctcttccatctcaactccaagtctgccctgcagcgcatagctgtggctctg
gtgctctgcgagtggtctacactgcagaaggattgtcaggtggtgtcaaccatggtgcag
cctcgtcttctcgccattctgtctgagcagttgtactacgacgaaattgccatccccttc
acgcgtatgcagaatgagtgcaagcagctcattgcattattcgctgattccaacatagac
cttgaagaccgcctcaattgtagtgttttcaccattgaccaagccaatgaactggtaacc
accatctttacagagtcaacagcaggtctgaatgtgcagtccaaacagtggcaggcgctg
gacggtaaacgtcaacaggctcaggcaacggtgatggagaccagcacagaatggcagcag
ctgcatctgcgcgtccacatgtttacggcctgcgcagtgattaacctgcaagtgcttcct
gacaagctgaatcctctggtcaggcctttaatggaggccatcaagcgagaggagaacacc
ctgattcagggttacactgcttctttcatagccaagctattgcagcagtgtgctggacgc
tcaccgtgccccaaccccaagatcatcaaaaacctctgtgcgtcagcctgcgtggactct
gcagtcacaccctcatctgcctgccctgtaccccccacacaggaaaatgccaaagtcagt
ggtttggagaaagactgcatgcatcatatggtcaacaagacccgtggcatcatcactctg
taccgtcaccaaagagcagcatttgccatcactagtaagagaggaccagcccctaaagcc
ccaaaggccccctccacagagcttcctcctggcagcaccatcagtactgataatgatgag
agcaggaagccatttctcatccagagaagaggggccgagttctccctaacaactgttgcc
aagcactttagtgcagacctcaccaagtctcttccgtacctctgggacaacacagtggga
ccactgaggacagtggtgactgaaaatcaatgcattgataggcaggtccagctggagagg
ggagacgctgcagctcaggaactggtcaactctctgcaggttctggaggtcatcgctggg
gccatggcttctgaactgaaacctttgctgctgcagcacctaccagatctgttcacctgc
ctgcagcatccgtacacagctgtgcgtcacatggccgcacgctgtgtgggcgtgtttagt
aagctggcaatgttggagaccatgaacagcttcctcgagtgtgtactgccctggttagct
gctattgacgactgtaccaaacaggagggagccatcgaggctttagcctgtgtcatggag
cagctggatgtggacattgtaccttacattgtgctgctggttgttccagttctgggccga
atgagcgaccccagtgatagtattcgttttatggccacccagtgctttgccacactcatc
cgactactgccactggaggcaggtataccagaccctccagccatgtctgctgacctcatc
cgccagaaagccagagaacgccacttcctggagcaactgttggatggcagaaagttggag
aactataagatccctgtgcccattaaggctgagctcaggaagtaccagcaggacggtgtg
aactggctgtccttccttaacaagtacaagctgcacgggatcctgtgtgatgacatgggt
cttggaaaaacgctgcagtccatttgcattctggcaggagatcactacctcagggctcag
gaatatgccaagactacggctgcagactgcagccccatgccctccctggtggtttgtcct
cccacactgactggccactgggtggatgaagtgggcaagttctgcagcaaagaatacctc
aaccctctgcactacactgggcctcctactgaacgaatgcggttgcaacaccaagtgaag
aaacacaatcttgttatcgcctcttatgatgttgtgcgaaatgacatcgactttttcaga
aatatcaagtttaattactgtattcttgatgagggtcatgtcatcaagaatgggaaaacc
aaactttccaaagccatcaagcagttggccgccaattttcgaatcatcttgtcaggaact
cccattcagaacaacgtcttagagctctggtcattgttcgacttcctcatgccggggttc
cttggaacagaacggcagttcgctgcacgttatggtaaacccatcctggcgagccgtgat
gccaaaagttcctcacgggaacaggaagcaggtgtgctggcgatggaggctctacatcga
caggtgctgcccttcctactgaggaggatgaaggtggacgtcctccaggaccttcctccc
aaaatcattcaggactattattgcaacctgagtcctttacaggttcagctgtacgaagac
tttgcaaagtctcgagccaaggccagtgtggaggacaccatctctgtggcctctacagaa
gaggaggaaaagcccaaactgaaggccacaggccacgtcttccaggcgctgcagtacctg
cggaagctgtgtaaccaccccagcttggtcttgacgcctcagcatccagagtacaaacgc
atcagtgagcagttggcggatcagaactccagcctgcgggacattacgcacgcgcccaaa
ctctctgctctcaaacagttgttgttggactgtggtctcggttgtggaggaggaacagag
ggaggcactgaatcggtggtggcccagcatcgtgtgctcattttctgtcagctgaagagc
atgctggacattgtggagcaagacctgctgaaacccaaactgccgtcaatcacctacctt
aggctggacggcagcgtgcaggccggcttgcgccactccatcgtttccaggtttaataat
gacccatccattgacgtgctgctgctgaccacccatgttggtggtcttggtctgaatctg
acgggtgctgacactgtggtgtttgtagaacacgactggaaccccatgagggacctgcag
gccatggaccgtgcacataggataggacagaaacgggtcgtgaacgtgtacaggctgatc
acccggggaactctggaggagaagataatgggtctgcagaaattcaagataagcatcgcc
aacaccatcatcagccaggaaaactccagcttgcagagcatgggcaccgaccagctcctc
aacctcttcactctcgacaaggatgagaagggtgagcaggttccgtcgacctcagggaag
acctccatgaagtcggtgctggacggcctgggagagctatgggaccagcagcagtacgac
acagagtacaacctggacagcttcatgcactctctgcagtag
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